Wall clock time and date at job start Tue Mar 31 2020 07:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.48368 * 2 1 4 4 O 1.42904 * 109.48705 * 120.02704 * 2 1 3 5 5 C 1.42897 * 114.09945 * 181.14597 * 4 2 1 6 6 C 1.53094 * 109.41558 * 298.84133 * 5 4 2 7 7 C 1.53185 * 109.16004 * 57.60691 * 6 5 4 8 8 C 1.53088 * 109.48110 * 239.97066 * 2 1 3 9 9 H 1.09005 * 109.56940 * 62.46309 * 8 2 1 10 10 C 1.50695 * 109.52650 * 302.30895 * 8 2 1 11 11 O 1.21284 * 119.99973 * 334.25175 * 10 8 2 12 12 N 1.34778 * 120.00233 * 154.25504 * 10 8 2 13 13 C 1.46923 * 120.62954 * 184.93326 * 12 10 8 14 14 C 1.53624 * 108.54270 * 126.37047 * 13 12 10 15 15 C 1.53040 * 109.24209 * 54.85459 * 14 13 12 16 16 C 1.52998 * 109.45982 * 178.49425 * 15 14 13 17 17 C 1.50702 * 109.47035 * 295.06742 * 16 15 14 18 18 H 1.07998 * 120.00165 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00084 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00009 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00102 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47112 * 89.99955 * 21 19 17 23 23 H 1.48503 * 109.47253 * 210.00135 * 21 19 17 24 24 H 1.48503 * 109.46668 * 330.00219 * 21 19 17 25 25 C 1.53043 * 109.53813 * 298.51130 * 15 14 13 26 26 C 1.46918 * 120.62879 * 5.21637 * 12 10 8 27 27 H 1.08994 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47250 * 300.02569 * 1 2 3 29 29 H 1.09000 * 109.46876 * 60.02388 * 1 2 3 30 30 H 1.09002 * 109.48503 * 178.85466 * 5 4 2 31 31 H 1.09003 * 109.47978 * 58.82638 * 5 4 2 32 32 H 1.08999 * 109.52068 * 177.51065 * 6 5 4 33 33 H 1.08996 * 109.52223 * 297.70348 * 6 5 4 34 34 H 1.09003 * 109.54320 * 62.89090 * 7 6 5 35 35 H 1.09001 * 109.53916 * 183.15220 * 7 6 5 36 36 H 1.09003 * 109.58845 * 246.20377 * 13 12 10 37 37 H 1.09000 * 109.58692 * 6.63142 * 13 12 10 38 38 H 1.09009 * 109.63403 * 294.86742 * 14 13 12 39 39 H 1.08996 * 109.46061 * 174.74500 * 14 13 12 40 40 H 1.08996 * 109.46006 * 58.53548 * 15 14 13 41 41 H 1.08999 * 109.47502 * 55.07020 * 16 15 14 42 42 H 1.09003 * 109.46880 * 175.06894 * 16 15 14 43 43 H 0.97003 * 119.99902 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50012 * 301.41689 * 25 15 14 45 45 H 1.08999 * 109.52154 * 181.33094 * 25 15 14 46 46 H 1.09005 * 109.59039 * 353.36818 * 26 12 10 47 47 H 1.09001 * 109.58776 * 113.79593 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 8 2.0067 -0.6741 1.1664 5 6 3.4308 -0.7091 1.2790 6 6 4.0178 -1.4598 0.0808 7 6 3.5711 -0.7706 -1.2123 8 6 2.0405 -0.7223 -1.2495 9 1 1.7147 -0.1853 -2.1404 10 6 1.4929 -2.1259 -1.2791 11 8 1.1793 -2.6764 -0.2449 12 7 1.3515 -2.7695 -2.4548 13 6 0.7198 -4.0948 -2.5114 14 6 -0.4230 -4.0479 -3.5370 15 6 0.1233 -3.5546 -4.8787 16 6 -1.0031 -3.5416 -5.9140 17 6 -1.4698 -4.9522 -6.1661 18 1 -1.0088 -5.7756 -5.6409 19 6 -2.4846 -5.1917 -7.0682 20 7 -2.8922 -6.4226 -7.2878 21 14 -3.2816 -3.7677 -7.9774 22 1 -2.5498 -3.5182 -9.2452 23 1 -4.6962 -4.1032 -8.2801 24 1 -3.2323 -2.5495 -7.1294 25 6 0.6813 -2.1389 -4.7148 26 6 1.8316 -2.1618 -3.7033 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5143 0.8898 29 1 -0.3633 0.5135 -0.8902 30 1 3.7102 -1.2200 2.2004 31 1 3.8192 0.3092 1.2957 32 1 5.1060 -1.4493 0.1420 33 1 3.6616 -2.4899 0.0863 34 1 3.9688 0.2438 -1.2409 35 1 3.9392 -1.3324 -2.0708 36 1 1.4568 -4.8382 -2.8152 37 1 0.3215 -4.3520 -1.5299 38 1 -1.2003 -3.3677 -3.1884 39 1 -0.8419 -5.0466 -3.6597 40 1 0.9174 -4.2213 -5.2147 41 1 -1.8348 -2.9454 -5.5387 42 1 -0.6363 -3.1085 -6.8446 43 1 -3.6065 -6.5911 -7.9222 44 1 -0.1062 -1.4768 -4.3551 45 1 1.0489 -1.7788 -5.6756 46 1 2.1672 -1.1432 -3.5085 47 1 2.6575 -2.7508 -4.1023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335502249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:36 Heat of formation + Delta-G solvation = -120.880995 kcal Electronic energy + Delta-G solvation = -25475.854338 eV Core-core repulsion = 22042.833627 eV Total energy + Delta-G solvation = -3433.020711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84516 -39.83920 -38.29158 -35.71444 -34.75647 -33.91737 -33.69751 -31.96879 -30.39122 -28.83856 -26.48195 -25.48811 -24.29510 -23.41629 -23.07745 -22.05361 -20.86357 -19.57941 -18.80851 -18.09266 -17.33077 -16.83229 -16.56789 -16.36103 -16.13281 -15.60934 -15.34058 -15.12330 -14.98192 -14.80282 -14.46928 -14.15481 -13.93874 -13.75672 -13.71734 -13.31271 -13.12044 -13.06302 -12.94391 -12.82515 -12.60864 -12.37595 -12.13369 -12.03649 -11.97459 -11.72065 -11.63375 -11.33913 -11.30125 -11.14288 -10.98422 -10.72532 -10.48936 -10.21221 -9.53002 -8.25778 -6.28205 1.35679 1.38374 1.49451 1.74180 2.07128 2.37912 2.95347 3.09871 3.47639 3.72393 3.78156 3.88833 3.99553 4.03044 4.05188 4.12678 4.21671 4.33689 4.38539 4.39646 4.43306 4.56030 4.66513 4.67872 4.74782 4.79083 4.81622 4.83905 4.87080 4.94800 4.97399 5.05137 5.11340 5.15789 5.20369 5.23735 5.28727 5.30729 5.33742 5.47068 5.62898 5.72155 5.76117 6.33905 6.47208 6.55376 6.80028 7.32285 7.35744 8.91002 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030615 B = 0.003476 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.357131 B = 8054.321896 C = 8145.903908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 H 0.094 0.906 4 O -0.392 6.392 5 C 0.058 3.942 6 C -0.158 4.158 7 C -0.108 4.108 8 C -0.140 4.140 9 H 0.126 0.874 10 C 0.516 3.484 11 O -0.565 6.565 12 N -0.612 5.612 13 C 0.120 3.880 14 C -0.109 4.109 15 C -0.069 4.069 16 C -0.006 4.006 17 C -0.520 4.520 18 H 0.034 0.966 19 C -0.001 4.001 20 N -0.955 5.955 21 Si 0.949 3.051 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.247 1.247 25 C -0.126 4.126 26 C 0.108 3.892 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.013 0.987 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.117 0.883 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.039 19.493 11.525 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.112 0.888 4 O -0.311 6.311 5 C -0.019 4.019 6 C -0.196 4.196 7 C -0.146 4.146 8 C -0.162 4.162 9 H 0.144 0.856 10 C 0.306 3.694 11 O -0.444 6.444 12 N -0.345 5.345 13 C -0.003 4.003 14 C -0.148 4.148 15 C -0.088 4.088 16 C -0.044 4.044 17 C -0.558 4.558 18 H 0.052 0.948 19 C -0.197 4.197 20 N -0.597 5.597 21 Si 0.772 3.228 22 H -0.190 1.190 23 H -0.216 1.216 24 H -0.170 1.170 25 C -0.164 4.164 26 C -0.014 4.014 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.135 0.865 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.636 19.019 12.121 27.443 hybrid contribution -0.895 -0.712 -0.780 1.385 sum 14.741 18.307 11.341 26.097 Atomic orbital electron populations 1.21875 0.93911 1.01966 1.03208 1.22010 0.94839 0.95027 0.83618 0.88835 1.88041 1.21860 1.78470 1.42715 1.22657 0.80604 1.00277 0.98347 1.22188 1.02025 0.99382 0.95976 1.21629 0.90959 1.03638 0.98325 1.22231 0.98954 0.92626 1.02352 0.85620 1.21000 0.77357 0.88668 0.82383 1.90703 1.51318 1.68919 1.33418 1.48312 1.59405 1.18890 1.07911 1.21506 0.94893 0.84557 0.99303 1.21801 0.96861 1.01116 0.95005 1.20917 0.97202 0.96654 0.94017 1.19581 0.94943 0.94551 0.95284 1.21507 1.17941 0.93547 1.22787 0.94807 1.26029 0.97509 0.98223 0.97900 1.70082 1.30373 1.21986 1.37232 0.85683 0.77342 0.80255 0.79486 1.18979 1.21613 1.17032 1.22002 0.98228 0.96058 1.00138 1.22023 0.96333 1.00258 0.82785 0.94411 0.91500 0.89443 0.89476 0.90958 0.88632 0.94305 0.87378 0.90112 0.91527 0.91300 0.93326 0.92958 0.92567 0.96898 0.95967 0.92775 0.91869 0.89010 0.86550 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.25 71.98 0.67 -2.62 16 2 C 0.10 1.99 2.84 30.62 0.09 2.07 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 O -0.39 -9.82 8.99 -129.48 -1.16 -10.98 16 5 C 0.06 1.01 6.84 72.01 0.49 1.51 16 6 C -0.16 -2.64 5.81 30.69 0.18 -2.46 16 7 C -0.11 -1.40 5.33 30.71 0.16 -1.23 16 8 C -0.14 -2.49 1.73 -11.45 -0.02 -2.51 16 9 H 0.13 1.57 6.44 -2.38 -0.02 1.56 16 10 C 0.52 14.06 5.10 87.66 0.45 14.51 16 11 O -0.57 -20.44 12.79 16.46 0.21 -20.23 16 12 N -0.61 -16.27 2.97 -818.07 -2.43 -18.70 16 13 C 0.12 3.89 6.45 86.51 0.56 4.44 16 14 C -0.11 -4.07 5.21 30.82 0.16 -3.91 16 15 C -0.07 -2.48 2.10 -10.77 -0.02 -2.50 16 16 C -0.01 -0.28 3.52 29.85 0.10 -0.17 16 17 C -0.52 -29.35 8.94 25.60 0.23 -29.13 16 18 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 19 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 20 N -0.96 -60.30 13.96 21.45 0.30 -60.01 16 21 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 25 C -0.13 -3.16 5.36 30.67 0.16 -3.00 16 26 C 0.11 2.13 5.90 86.37 0.51 2.64 16 27 H 0.04 1.10 6.31 -2.39 -0.02 1.09 16 28 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.95 7.00 -2.39 -0.02 0.93 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.95 7.52 -2.39 -0.02 0.94 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.44 7.04 -2.39 -0.02 2.43 16 38 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.05 2.28 6.91 -2.39 -0.02 2.26 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 42 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.12 1.46 5.16 -2.38 -0.01 1.45 16 47 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -75.37 349.36 3.86 -71.51 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.87 Total: 14.45 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.18 Total: -21.94 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.13 Total: -78.70 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.95 Total: -31.21 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -75.37 3.86 -71.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335502249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.374 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds