Wall clock time and date at job start Tue Mar 31 2020 08:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99633 * 2 1 4 4 C 1.50697 * 109.47309 * 298.99114 * 3 2 1 5 5 O 1.21283 * 119.99990 * 137.78245 * 4 3 2 6 6 N 1.34777 * 120.00092 * 317.78082 * 4 3 2 7 7 C 1.46927 * 120.62933 * 356.12361 * 6 4 3 8 8 C 1.53190 * 108.77650 * 233.58875 * 7 6 4 9 9 C 1.53044 * 109.30913 * 305.36063 * 8 7 6 10 10 C 1.50702 * 109.45921 * 181.38430 * 9 8 7 11 11 H 1.08002 * 120.00272 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00034 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99628 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00204 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46734 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47221 * 119.99913 * 14 12 10 17 17 H 1.48494 * 109.47376 * 240.00246 * 14 12 10 18 18 C 1.53039 * 109.53782 * 61.36808 * 9 8 7 19 19 C 1.46926 * 120.63624 * 176.09940 * 6 4 3 20 20 C 1.52997 * 109.47574 * 58.99408 * 3 2 1 21 21 C 1.52992 * 109.47772 * 179.97438 * 20 3 2 22 22 C 1.53003 * 109.47005 * 300.00381 * 21 20 3 23 23 C 1.52993 * 109.47398 * 59.99521 * 22 21 20 24 24 C 1.53001 * 109.46916 * 178.99090 * 3 2 1 25 25 H 1.08995 * 109.47426 * 54.64985 * 1 2 3 26 26 H 1.09004 * 109.47051 * 174.65663 * 1 2 3 27 27 H 1.09002 * 109.47143 * 294.64750 * 1 2 3 28 28 H 1.09001 * 109.59044 * 113.79882 * 7 6 4 29 29 H 1.09001 * 109.58447 * 353.37126 * 7 6 4 30 30 H 1.09004 * 109.50028 * 185.41503 * 8 7 6 31 31 H 1.08998 * 109.50188 * 65.31254 * 8 7 6 32 32 H 1.08991 * 109.46116 * 301.34600 * 9 8 7 33 33 H 0.97005 * 119.99409 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.49758 * 58.58286 * 18 9 8 35 35 H 1.08999 * 109.49920 * 178.68243 * 18 9 8 36 36 H 1.09007 * 109.57912 * 6.62726 * 19 6 4 37 37 H 1.08996 * 109.58943 * 246.20393 * 19 6 4 38 38 H 1.09004 * 109.47191 * 300.00279 * 20 3 2 39 39 H 1.09001 * 109.46996 * 59.99471 * 20 3 2 40 40 H 1.08995 * 109.47917 * 179.97438 * 21 20 3 41 41 H 1.09001 * 109.47152 * 59.99738 * 21 20 3 42 42 H 1.09000 * 109.46920 * 299.99205 * 22 21 20 43 43 H 1.09001 * 109.47249 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.46821 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47103 * 60.00433 * 23 22 21 46 46 H 1.09000 * 109.47396 * 299.99735 * 24 3 2 47 47 H 1.09000 * 109.47399 * 60.00001 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5853 2.0445 -1.2427 5 8 1.2635 3.2118 -1.1739 6 7 1.5631 1.4082 -2.4307 7 6 2.0304 0.0200 -2.5452 8 6 3.0884 -0.0546 -3.6505 9 6 2.5099 0.5226 -4.9445 10 6 3.5364 0.4198 -6.0431 11 1 4.5042 -0.0141 -5.8390 12 6 3.2401 0.8796 -7.3087 13 7 2.0618 1.4083 -7.5570 14 14 4.5122 0.7515 -8.6706 15 1 5.7470 0.1224 -8.1369 16 1 3.9718 -0.0797 -9.7761 17 1 4.8289 2.1094 -9.1814 18 6 2.1393 1.9917 -4.7289 19 6 1.0706 2.0894 -3.6357 20 6 1.5387 2.0737 1.2363 21 6 2.1614 3.4711 1.2367 22 6 3.6864 3.3500 1.2623 23 6 4.1578 2.5819 0.0260 24 6 3.5351 1.1848 0.0254 25 1 -0.3634 0.5945 -0.8381 26 1 -0.3633 -1.0232 -0.0957 27 1 -0.3633 0.4286 0.9340 28 1 1.1914 -0.6284 -2.7980 29 1 2.4679 -0.2975 -1.5986 30 1 3.3737 -1.0942 -3.8116 31 1 3.9648 0.5220 -3.3549 32 1 1.6193 -0.0390 -5.2263 33 1 1.8535 1.7322 -8.4474 34 1 3.0247 2.5491 -4.4230 35 1 1.7492 2.4085 -5.6574 36 1 0.8749 3.1375 -3.4087 37 1 0.1534 1.6099 -3.9775 38 1 0.4523 2.1596 1.2183 39 1 1.8460 1.5391 2.1352 40 1 1.8253 4.0186 2.1172 41 1 1.8545 4.0059 0.3378 42 1 3.9934 2.8153 2.1612 43 1 4.1301 4.3456 1.2630 44 1 5.2442 2.4952 0.0445 45 1 3.8510 3.1166 -0.8729 46 1 3.8424 0.6504 0.9243 47 1 3.8711 0.6376 -0.8554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336071928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:57 Heat of formation + Delta-G solvation = -105.128473 kcal Electronic energy + Delta-G solvation = -26504.722693 eV Core-core repulsion = 23072.385062 eV Total energy + Delta-G solvation = -3432.337630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29324 -39.35902 -38.34427 -37.22600 -35.33457 -32.98426 -32.20789 -31.54618 -30.90167 -28.12554 -27.57958 -25.40306 -24.27057 -23.59526 -23.23384 -21.93614 -20.97072 -19.59123 -18.72254 -18.28796 -17.27006 -16.98896 -16.56335 -16.41723 -16.03210 -15.53553 -15.35182 -14.98089 -14.83766 -14.61868 -14.52239 -14.28189 -14.17132 -13.85961 -13.39880 -13.16268 -13.11070 -13.00163 -12.96411 -12.83915 -12.54497 -12.41110 -12.17968 -11.99196 -11.94055 -11.87777 -11.45528 -11.41882 -11.35340 -11.01103 -10.83627 -10.67856 -10.43507 -9.97446 -9.51688 -8.08632 -6.22708 1.39310 1.42100 1.50062 1.52471 2.03846 2.42983 2.60213 3.17976 3.36119 3.67029 3.72612 4.09841 4.11454 4.21303 4.26500 4.29990 4.37151 4.43379 4.44884 4.46264 4.51481 4.55178 4.60679 4.64302 4.72995 4.80376 4.86911 4.93382 4.94647 4.99719 5.05676 5.15429 5.19252 5.23633 5.26196 5.31082 5.35193 5.42858 5.48768 5.62968 5.73107 5.95530 5.97151 6.10366 6.37266 6.54877 6.88740 7.17354 7.45655 8.94974 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.004523 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.030483 B = 6189.092630 C = 6434.034348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.369 6.369 3 C 0.111 3.889 4 C 0.492 3.508 5 O -0.569 6.569 6 N -0.593 5.593 7 C 0.108 3.892 8 C -0.117 4.117 9 C 0.046 3.954 10 C -0.530 4.530 11 H 0.053 0.947 12 C 0.013 3.987 13 N -0.917 5.917 14 Si 0.951 3.049 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.284 1.284 18 C -0.108 4.108 19 C 0.117 3.883 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.106 4.106 25 H 0.023 0.977 26 H 0.112 0.888 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.001 0.999 33 H 0.260 0.740 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.108 0.892 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 -1.971 19.347 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.288 6.288 3 C 0.068 3.932 4 C 0.280 3.720 5 O -0.450 6.450 6 N -0.324 5.324 7 C -0.013 4.013 8 C -0.155 4.155 9 C 0.028 3.972 10 C -0.568 4.568 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.557 5.557 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.210 1.210 18 C -0.147 4.147 19 C -0.006 4.006 20 C -0.156 4.156 21 C -0.180 4.180 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.144 4.144 25 H 0.042 0.958 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.050 0.950 46 H 0.126 0.874 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.387 -1.483 19.222 19.283 hybrid contribution 0.084 0.449 -1.664 1.726 sum -0.302 -1.033 17.558 17.591 Atomic orbital electron populations 1.22982 0.80100 1.04175 1.00373 1.87946 1.20941 1.25501 1.94441 1.21786 0.96476 0.83398 0.91500 1.21810 0.77040 0.87230 0.85871 1.90497 1.50850 1.17682 1.85954 1.48342 1.61559 1.14921 1.07595 1.22206 0.97446 0.80622 1.01059 1.21909 0.97505 1.00834 0.95267 1.18598 0.94766 0.91807 0.92032 1.21609 1.00605 1.39415 0.95208 0.92903 1.25712 0.97038 0.94971 1.00817 1.69991 1.22222 1.41753 1.21699 0.85613 0.79719 0.77580 0.79392 1.19108 1.20614 1.21013 1.21729 0.95811 1.00061 0.97085 1.21564 0.96961 0.97071 0.84959 1.21885 1.00672 0.96804 0.96286 1.21955 0.95847 0.96488 1.03754 1.21509 0.95268 1.00414 0.97730 1.21531 1.01166 0.94637 0.98474 1.21658 0.89233 0.98643 1.04839 0.95840 0.86997 0.92057 0.91787 0.86103 0.91151 0.93520 0.98118 0.93088 0.96063 0.91005 0.91409 0.92297 0.92001 0.88459 0.90997 0.90440 0.89912 0.91702 0.89525 0.94976 0.87395 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.99 113.37 1.13 1.54 16 2 O -0.37 -8.80 7.54 -148.98 -1.12 -9.92 16 3 C 0.11 2.85 0.45 -11.54 -0.01 2.84 16 4 C 0.49 16.65 3.98 87.66 0.35 17.00 16 5 O -0.57 -22.23 12.44 -3.04 -0.04 -22.27 16 6 N -0.59 -21.41 2.79 -818.91 -2.28 -23.69 16 7 C 0.11 3.57 4.90 86.36 0.42 3.99 16 8 C -0.12 -4.59 5.30 30.67 0.16 -4.43 16 9 C 0.05 2.28 2.06 -11.51 -0.02 2.25 16 10 C -0.53 -28.82 8.56 25.60 0.22 -28.60 16 11 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 12 C 0.01 0.72 5.30 84.66 0.45 1.17 16 13 N -0.92 -52.60 11.30 21.45 0.24 -52.36 16 14 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 C -0.11 -5.24 5.15 30.67 0.16 -5.08 16 19 C 0.12 4.86 6.44 86.36 0.56 5.42 16 20 C -0.12 -2.63 4.28 30.59 0.13 -2.50 16 21 C -0.14 -3.37 5.63 30.59 0.17 -3.20 16 22 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 23 C -0.12 -2.87 5.70 30.58 0.17 -2.70 16 24 C -0.11 -2.45 4.81 30.58 0.15 -2.31 16 25 H 0.02 0.59 6.87 -2.39 -0.02 0.58 16 26 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.08 6.69 -2.39 -0.02 1.07 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.12 3.44 3.63 -2.39 -0.01 3.43 16 30 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 34 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 3.92 6.03 -2.39 -0.01 3.91 16 36 H 0.07 2.88 7.00 -2.38 -0.02 2.87 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 1.42 6.65 -2.38 -0.02 1.40 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.43 4.97 -2.61 -0.01 2.42 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.03 1.00 7.08 -2.39 -0.02 0.98 16 46 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 1.79 6.34 -2.39 -0.02 1.77 16 Total: -1.00 -62.95 340.56 4.00 -58.95 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.94 Total: 20.46 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.23 Total: -16.69 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.04 Total: -76.05 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.16 Total: -32.19 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.95 4.00 -58.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336071928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.176 kcal (2) G-P(sol) polarization free energy of solvation -62.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds