Wall clock time and date at job start Tue Mar 31 2020 07:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47333 * 2 1 4 4 C 1.42902 * 114.00068 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.46859 * 330.00122 * 4 3 2 6 6 C 1.52996 * 109.47328 * 210.00470 * 4 3 2 7 7 C 1.50702 * 109.47159 * 64.99682 * 6 4 3 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 4 10 10 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 11 11 C 1.52998 * 109.47320 * 89.99349 * 10 9 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 9 7 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 9 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46927 * 59.99717 * 17 15 13 19 19 H 1.48496 * 109.47287 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47040 * 299.99940 * 17 15 13 21 21 C 1.50695 * 109.46895 * 90.00038 * 4 3 2 22 22 C 1.30530 * 124.44752 * 235.02354 * 21 4 3 23 23 C 1.51106 * 111.10358 * 179.97438 * 22 21 4 24 24 C 1.54637 * 104.72520 * 16.43279 * 23 22 21 25 25 C 1.51102 * 124.44935 * 54.73297 * 21 4 3 26 26 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46555 * 299.99881 * 1 2 3 28 28 H 1.08994 * 109.46878 * 59.99581 * 1 2 3 29 29 H 1.08998 * 109.46555 * 240.00119 * 2 1 3 30 30 H 1.09001 * 109.47248 * 120.00554 * 2 1 3 31 31 H 1.09004 * 109.47066 * 304.99885 * 6 4 3 32 32 H 1.08994 * 109.47405 * 184.99715 * 6 4 3 33 33 H 1.08994 * 109.46996 * 209.99677 * 10 9 7 34 34 H 1.09001 * 109.46578 * 329.99540 * 10 9 7 35 35 H 1.09004 * 109.46895 * 60.00075 * 11 10 9 36 36 H 1.08992 * 109.47180 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.47106 * 300.00561 * 11 10 9 38 38 H 1.09001 * 109.47567 * 210.00057 * 12 9 7 39 39 H 1.09005 * 109.47076 * 330.00563 * 12 9 7 40 40 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 41 41 H 1.08002 * 124.44701 * 359.95985 * 22 21 4 42 42 H 1.08990 * 110.39043 * 135.25207 * 23 22 21 43 43 H 1.09000 * 110.38056 * 257.62940 * 23 22 21 44 44 H 1.09003 * 111.03444 * 93.40073 * 24 23 22 45 45 H 1.09003 * 111.03661 * 217.33743 * 24 23 22 46 46 H 1.09005 * 110.37923 * 282.38998 * 25 21 4 47 47 H 1.09001 * 110.38882 * 44.75982 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8637 0.6013 0.5130 6 6 3.8412 2.7454 0.7208 7 6 3.4491 2.6535 2.1730 8 8 2.8964 1.6577 2.5901 9 7 3.7180 3.6754 3.0096 10 6 4.3860 4.8781 2.5059 11 6 3.3356 5.8824 2.0275 12 6 3.3423 3.5836 4.4226 13 6 4.4771 2.9752 5.2056 14 1 5.3873 2.6863 4.7012 15 6 4.3533 2.7875 6.5659 16 7 3.2447 3.1389 7.1801 17 14 5.7603 2.0341 7.5366 18 1 6.9681 2.8871 7.4006 19 1 5.3795 1.9409 8.9689 20 1 6.0519 0.6757 7.0121 21 6 3.9311 1.4999 -1.4216 22 6 4.8258 0.6861 -1.9125 23 6 5.1028 0.9946 -3.3656 24 6 4.5291 2.4141 -3.5823 25 6 3.4582 2.4832 -2.4669 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.3376 3.5962 0.2616 32 1 4.9204 2.8769 0.6435 33 1 4.9793 5.3251 3.3035 34 1 5.0379 4.6103 1.6744 35 1 2.6836 6.1501 2.8590 36 1 3.8325 6.7770 1.6524 37 1 2.7422 5.4354 1.2299 38 1 3.1289 4.5809 4.8074 39 1 2.4553 2.9580 4.5228 40 1 3.1578 3.0072 8.1371 41 1 5.3053 -0.1039 -1.3535 42 1 6.1755 0.9850 -3.5581 43 1 4.5941 0.2772 -4.0096 44 1 5.2982 3.1731 -3.4387 45 1 4.0712 2.5049 -4.5673 46 1 2.4835 2.1860 -2.8542 47 1 3.4109 3.4886 -2.0486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341635289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:58 Heat of formation + Delta-G solvation = -80.594996 kcal Electronic energy + Delta-G solvation = -24877.459039 eV Core-core repulsion = 21446.185260 eV Total energy + Delta-G solvation = -3431.273779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65436 -38.53605 -37.13513 -35.13583 -32.94604 -32.40887 -30.17612 -29.98422 -29.06190 -28.15494 -26.71970 -23.72824 -22.92426 -22.57553 -21.89602 -20.80727 -18.42306 -18.09887 -16.76138 -16.46595 -16.32769 -15.73024 -15.49112 -15.27564 -14.73396 -14.39107 -14.16331 -13.72636 -13.27135 -12.98933 -12.89211 -12.80714 -12.41398 -12.25017 -12.01031 -11.93340 -11.79604 -11.68063 -11.54447 -11.39671 -11.26676 -11.15659 -11.11784 -10.98156 -10.86404 -10.66492 -10.51502 -10.43684 -10.08448 -9.59334 -9.30138 -8.91025 -8.68643 -8.39169 -7.55818 -5.99958 -4.04543 2.07079 3.33561 3.37894 3.40376 3.57314 3.89711 4.07427 4.46139 4.49977 4.55354 4.89494 5.01473 5.19079 5.21064 5.29098 5.31820 5.34085 5.38479 5.46304 5.51730 5.59088 5.61703 5.65042 5.70709 5.73604 5.75121 5.80087 5.87436 5.93015 5.98178 6.04229 6.12082 6.13493 6.18660 6.29519 6.30227 6.47677 6.56693 6.78453 7.15341 7.51228 7.54350 7.64361 7.97278 8.29558 8.53849 8.95884 9.22227 9.60472 11.07983 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.004041 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.638743 B = 6926.827200 C = 7271.446903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.364 6.364 4 C 0.157 3.843 5 H 0.073 0.927 6 C -0.135 4.135 7 C 0.510 3.490 8 O -0.535 6.535 9 N -0.600 5.600 10 C 0.108 3.892 11 C -0.169 4.169 12 C 0.248 3.752 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.148 4.148 22 C -0.166 4.166 23 C -0.097 4.097 24 C -0.126 4.126 25 C -0.086 4.086 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 -0.256 -20.840 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.098 3.902 5 H 0.091 0.909 6 C -0.175 4.175 7 C 0.296 3.704 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.017 4.017 11 C -0.228 4.228 12 C 0.128 3.872 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.148 4.148 22 C -0.184 4.184 23 C -0.134 4.134 24 C -0.164 4.164 25 C -0.123 4.123 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.813 -0.608 -20.403 20.428 hybrid contribution 1.024 -0.564 0.670 1.348 sum 1.837 -1.172 -19.733 19.853 Atomic orbital electron populations 1.21697 0.94224 1.01707 1.02855 1.22381 0.95154 0.84166 0.99611 1.87901 1.19527 1.26207 1.94667 1.20379 0.82290 0.98012 0.89516 0.90919 1.21824 1.02396 0.98877 0.94381 1.20134 0.79752 0.83521 0.86999 1.90649 1.42399 1.30476 1.77705 1.48231 1.58164 1.15321 1.11537 1.21386 0.94564 0.86496 0.99235 1.22221 1.00056 0.98921 1.01558 1.19217 0.96751 0.97442 0.73744 1.21417 1.01186 1.41153 0.92605 0.92625 1.24932 0.95965 0.95581 0.97622 1.69927 1.25725 1.47813 1.09980 0.86583 0.82283 0.79874 0.78804 1.20289 1.21199 1.20254 1.22613 0.97805 0.98163 0.96237 1.23185 0.99292 0.99660 0.96236 1.21310 1.00947 0.96835 0.94281 1.22497 0.98347 0.96871 0.98650 1.21208 0.98691 0.98686 0.93692 0.91607 0.91573 0.92482 0.94431 0.92804 0.88806 0.88506 0.90142 0.91862 0.92120 0.92324 0.92965 0.95222 0.93967 0.92732 0.85959 0.91336 0.90951 0.91113 0.91200 0.90627 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.16 0.38 -1.51 16 2 C 0.06 0.93 6.46 37.16 0.24 1.17 16 3 O -0.36 -6.09 9.19 -49.63 -0.46 -6.55 16 4 C 0.16 2.40 2.05 -27.89 -0.06 2.34 16 5 H 0.07 1.21 7.52 -51.92 -0.39 0.82 16 6 C -0.13 -2.12 3.91 -27.88 -0.11 -2.23 16 7 C 0.51 10.87 7.55 -10.98 -0.08 10.78 16 8 O -0.54 -13.65 15.00 -8.85 -0.13 -13.78 16 9 N -0.60 -12.98 2.46 -175.06 -0.43 -13.41 16 10 C 0.11 1.77 5.94 -4.04 -0.02 1.75 16 11 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 12 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 13 C -0.52 -15.08 9.39 -34.44 -0.32 -15.41 16 14 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.15 -1.82 5.03 -100.74 -0.51 -2.33 16 22 C -0.17 -1.82 10.55 -35.70 -0.38 -2.20 16 23 C -0.10 -0.86 6.81 -26.82 -0.18 -1.04 16 24 C -0.13 -1.08 7.20 -24.93 -0.18 -1.26 16 25 C -0.09 -0.91 6.70 -26.75 -0.18 -1.09 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.09 1.33 6.89 -51.93 -0.36 0.98 16 32 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 33 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.06 0.87 6.43 -51.93 -0.33 0.53 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.71 7.24 -51.93 -0.38 0.34 16 38 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -33.28 382.20 -9.20 -42.48 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.51 Total: -0.57 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.14 Total: -4.76 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.31 Total: -39.65 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.59 Total: -20.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.28 -9.20 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341635289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.119 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds