Wall clock time and date at job start Tue Mar 31 2020 07:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47333 * 2 1 4 4 C 1.42902 * 114.00068 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.46859 * 330.00122 * 4 3 2 6 6 C 1.52996 * 109.47328 * 210.00470 * 4 3 2 7 7 C 1.50702 * 109.47159 * 64.99682 * 6 4 3 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 4 10 10 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 11 11 C 1.52998 * 109.47320 * 89.99349 * 10 9 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 9 7 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 9 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46927 * 59.99717 * 17 15 13 19 19 H 1.48496 * 109.47287 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47040 * 299.99940 * 17 15 13 21 21 C 1.50695 * 109.46895 * 90.00038 * 4 3 2 22 22 C 1.30530 * 124.44752 * 235.02354 * 21 4 3 23 23 C 1.51106 * 111.10358 * 179.97438 * 22 21 4 24 24 C 1.54637 * 104.72520 * 16.43279 * 23 22 21 25 25 C 1.51102 * 124.44935 * 54.73297 * 21 4 3 26 26 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46555 * 299.99881 * 1 2 3 28 28 H 1.08994 * 109.46878 * 59.99581 * 1 2 3 29 29 H 1.08998 * 109.46555 * 240.00119 * 2 1 3 30 30 H 1.09001 * 109.47248 * 120.00554 * 2 1 3 31 31 H 1.09004 * 109.47066 * 304.99885 * 6 4 3 32 32 H 1.08994 * 109.47405 * 184.99715 * 6 4 3 33 33 H 1.08994 * 109.46996 * 209.99677 * 10 9 7 34 34 H 1.09001 * 109.46578 * 329.99540 * 10 9 7 35 35 H 1.09004 * 109.46895 * 60.00075 * 11 10 9 36 36 H 1.08992 * 109.47180 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.47106 * 300.00561 * 11 10 9 38 38 H 1.09001 * 109.47567 * 210.00057 * 12 9 7 39 39 H 1.09005 * 109.47076 * 330.00563 * 12 9 7 40 40 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 41 41 H 1.08002 * 124.44701 * 359.95985 * 22 21 4 42 42 H 1.08990 * 110.39043 * 135.25207 * 23 22 21 43 43 H 1.09000 * 110.38056 * 257.62940 * 23 22 21 44 44 H 1.09003 * 111.03444 * 93.40073 * 24 23 22 45 45 H 1.09003 * 111.03661 * 217.33743 * 24 23 22 46 46 H 1.09005 * 110.37923 * 282.38998 * 25 21 4 47 47 H 1.09001 * 110.38882 * 44.75982 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8637 0.6013 0.5130 6 6 3.8412 2.7454 0.7208 7 6 3.4491 2.6535 2.1730 8 8 2.8964 1.6577 2.5901 9 7 3.7180 3.6754 3.0096 10 6 4.3860 4.8781 2.5059 11 6 3.3356 5.8824 2.0275 12 6 3.3423 3.5836 4.4226 13 6 4.4771 2.9752 5.2056 14 1 5.3873 2.6863 4.7012 15 6 4.3533 2.7875 6.5659 16 7 3.2447 3.1389 7.1801 17 14 5.7603 2.0341 7.5366 18 1 6.9681 2.8871 7.4006 19 1 5.3795 1.9409 8.9689 20 1 6.0519 0.6757 7.0121 21 6 3.9311 1.4999 -1.4216 22 6 4.8258 0.6861 -1.9125 23 6 5.1028 0.9946 -3.3656 24 6 4.5291 2.4141 -3.5823 25 6 3.4582 2.4832 -2.4669 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.3376 3.5962 0.2616 32 1 4.9204 2.8769 0.6435 33 1 4.9793 5.3251 3.3035 34 1 5.0379 4.6103 1.6744 35 1 2.6836 6.1501 2.8590 36 1 3.8325 6.7770 1.6524 37 1 2.7422 5.4354 1.2299 38 1 3.1289 4.5809 4.8074 39 1 2.4553 2.9580 4.5228 40 1 3.1578 3.0072 8.1371 41 1 5.3053 -0.1039 -1.3535 42 1 6.1755 0.9850 -3.5581 43 1 4.5941 0.2772 -4.0096 44 1 5.2982 3.1731 -3.4387 45 1 4.0712 2.5049 -4.5673 46 1 2.4835 2.1860 -2.8542 47 1 3.4109 3.4886 -2.0486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341635289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:57 Heat of formation + Delta-G solvation = -99.274102 kcal Electronic energy + Delta-G solvation = -24878.269026 eV Core-core repulsion = 21446.185260 eV Total energy + Delta-G solvation = -3432.083766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.02134 -39.80135 -38.22837 -36.86176 -34.95822 -33.73769 -31.65694 -31.24747 -30.10970 -29.16987 -28.39809 -25.39281 -24.39085 -23.71849 -23.38274 -21.57604 -19.86084 -19.29205 -18.60392 -17.89769 -17.79012 -17.18756 -16.79336 -16.43212 -16.21418 -15.95012 -15.47226 -15.07193 -14.67483 -14.45742 -14.37723 -13.83103 -13.58905 -13.49604 -13.40007 -13.22186 -13.15824 -12.93083 -12.81908 -12.66253 -12.62115 -12.54370 -12.42425 -12.16195 -12.05418 -11.99823 -11.88000 -11.82568 -11.72523 -11.63901 -10.64659 -10.55868 -10.44833 -9.68197 -9.39543 -8.22000 -6.37406 1.17080 1.35178 1.39696 1.47128 1.91360 2.31553 2.46609 2.80269 3.06835 3.53549 3.71223 3.87939 4.02150 4.13338 4.13980 4.17166 4.26821 4.35783 4.37215 4.47117 4.48574 4.52912 4.55667 4.66906 4.76611 4.84839 4.93669 4.95169 4.97993 5.00017 5.03772 5.05873 5.06489 5.09507 5.21743 5.23997 5.27161 5.39969 5.44459 5.58744 5.62035 5.88564 5.89023 6.07531 6.35998 6.70537 6.84605 7.28896 7.54875 8.84872 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.004041 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.638743 B = 6926.827200 C = 7271.446903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 O -0.385 6.385 4 C 0.156 3.844 5 H 0.048 0.952 6 C -0.119 4.119 7 C 0.498 3.502 8 O -0.589 6.589 9 N -0.607 5.607 10 C 0.100 3.900 11 C -0.161 4.161 12 C 0.264 3.736 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.085 4.085 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.018 0.982 39 H -0.008 1.008 40 H 0.267 0.733 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 0.319 -23.454 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 O -0.305 6.305 4 C 0.098 3.902 5 H 0.066 0.934 6 C -0.158 4.158 7 C 0.287 3.713 8 O -0.470 6.470 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.219 4.219 12 C 0.143 3.857 13 C -0.581 4.581 14 H 0.072 0.928 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.165 4.165 22 C -0.175 4.175 23 C -0.133 4.133 24 C -0.157 4.157 25 C -0.122 4.122 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.010 0.990 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.882 0.010 -23.054 23.233 hybrid contribution 0.359 -0.768 1.484 1.709 sum 3.241 -0.758 -21.570 21.825 Atomic orbital electron populations 1.21699 0.92854 1.03141 1.02267 1.22459 0.96315 0.83499 0.99208 1.87857 1.20508 1.27224 1.94869 1.20359 0.81689 0.96701 0.91466 0.93405 1.21815 1.04084 1.00184 0.89766 1.21186 0.78563 0.82365 0.89162 1.90619 1.44701 1.32549 1.79113 1.48283 1.58402 1.17435 1.09669 1.21735 0.95440 0.84971 1.00072 1.22149 0.99256 0.99691 1.00783 1.18640 0.94565 0.95393 0.77111 1.21690 1.01468 1.41588 0.93344 0.92825 1.25888 0.98773 0.95805 0.98757 1.70057 1.27797 1.48650 1.10448 0.85462 0.79250 0.78813 0.77247 1.18313 1.20308 1.20356 1.22400 0.99053 1.00159 0.94850 1.23467 0.97879 0.98548 0.97560 1.21368 1.02049 0.97339 0.92499 1.22504 0.97834 0.96758 0.98581 1.21227 0.99147 0.98084 0.93770 0.89221 0.94015 0.91055 0.92338 0.95578 0.86598 0.85832 0.91010 0.88113 0.94519 0.88463 0.92386 0.96358 0.98983 0.92433 0.86091 0.89896 0.89966 0.90278 0.89628 0.91149 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 10.28 71.98 0.74 -2.94 16 2 C 0.06 1.87 6.46 71.98 0.46 2.33 16 3 O -0.39 -13.13 9.19 -135.21 -1.24 -14.38 16 4 C 0.16 4.77 2.05 29.85 0.06 4.83 16 5 H 0.05 1.66 7.52 -2.38 -0.02 1.64 16 6 C -0.12 -3.62 3.91 29.85 0.12 -3.50 16 7 C 0.50 21.84 7.55 87.66 0.66 22.50 16 8 O -0.59 -31.91 15.00 10.73 0.16 -31.75 16 9 N -0.61 -26.87 2.46 -826.15 -2.03 -28.90 16 10 C 0.10 3.17 5.94 86.38 0.51 3.68 16 11 C -0.16 -4.23 10.24 71.98 0.74 -3.49 16 12 C 0.26 14.90 5.16 85.63 0.44 15.34 16 13 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 14 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 15 C 0.01 0.39 5.46 84.66 0.46 0.85 16 16 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 17 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C -0.16 -3.76 5.03 -15.88 -0.08 -3.84 16 22 C -0.16 -3.10 10.55 26.26 0.28 -2.82 16 23 C -0.10 -1.37 6.81 30.53 0.21 -1.16 16 24 C -0.12 -1.61 7.20 31.76 0.23 -1.38 16 25 C -0.09 -1.58 6.70 30.59 0.21 -1.38 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.03 0.91 8.09 -2.39 -0.02 0.89 16 31 H 0.12 3.03 6.89 -2.38 -0.02 3.02 16 32 H 0.12 3.08 7.40 -2.39 -0.02 3.07 16 33 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 34 H 0.10 2.44 6.43 -2.39 -0.02 2.43 16 35 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.46 7.24 -2.39 -0.02 1.44 16 38 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 39 H -0.01 -0.52 7.42 -2.38 -0.02 -0.54 16 40 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 41 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.07 1.30 7.81 -2.39 -0.02 1.28 16 Total: -1.00 -76.98 382.20 5.39 -71.59 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.91 Total: 16.02 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.28 Total: -2.89 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -1.74 Total: -86.36 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -1.08 Total: -46.12 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.98 5.39 -71.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341635289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.682 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds