Wall clock time and date at job start Tue Mar 31 2020 07:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.62618 * 2 1 4 4 C 1.51265 * 109.62638 * 239.61666 * 2 1 3 5 5 O 1.20763 * 120.85202 * 111.46452 * 4 2 1 6 6 C 1.51272 * 118.30138 * 291.44492 * 4 2 1 7 7 C 1.53232 * 108.53255 * 308.65002 * 6 4 2 8 8 C 1.52961 * 109.40399 * 54.63013 * 7 6 4 9 9 H 1.08999 * 109.41261 * 56.43343 * 8 7 6 10 10 C 1.50707 * 109.41268 * 176.29448 * 8 7 6 11 11 O 1.21281 * 120.00020 * 33.34092 * 10 8 7 12 12 N 1.34776 * 119.99473 * 213.34255 * 10 8 7 13 13 C 1.46504 * 119.99391 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47076 * 179.72694 * 13 12 10 15 15 C 1.52998 * 109.46915 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46597 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99847 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99639 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00301 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47209 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47264 * 120.00391 * 20 18 16 23 23 H 1.48504 * 109.47613 * 240.00259 * 20 18 16 24 24 C 1.52956 * 109.75887 * 296.36314 * 8 7 6 25 25 C 1.52994 * 109.48427 * 183.61588 * 24 8 7 26 26 C 1.53008 * 109.48321 * 303.65425 * 24 8 7 27 27 H 1.08997 * 109.47539 * 180.38194 * 1 2 3 28 28 H 1.09000 * 109.47121 * 300.38716 * 1 2 3 29 29 H 1.09002 * 109.47340 * 60.38157 * 1 2 3 30 30 H 1.08998 * 109.62742 * 188.93940 * 6 4 2 31 31 H 1.08997 * 109.62679 * 68.36492 * 6 4 2 32 32 H 1.09000 * 109.48685 * 294.64690 * 7 6 4 33 33 H 1.09008 * 109.48189 * 174.60741 * 7 6 4 34 34 H 0.96997 * 120.00259 * 359.73208 * 12 10 8 35 35 H 1.09002 * 109.47040 * 299.72639 * 13 12 10 36 36 H 1.08996 * 109.47026 * 59.72833 * 13 12 10 37 37 H 1.08992 * 109.46700 * 300.00513 * 14 13 12 38 38 H 1.09008 * 109.46748 * 59.99994 * 14 13 12 39 39 H 1.08996 * 109.47212 * 299.99437 * 15 14 13 40 40 H 1.08996 * 109.47128 * 60.00174 * 15 14 13 41 41 H 0.96999 * 119.99980 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47463 * 66.43130 * 25 24 8 43 43 H 1.09005 * 109.47394 * 186.42722 * 25 24 8 44 44 H 1.08999 * 109.46970 * 306.43308 * 25 24 8 45 45 H 1.09004 * 109.46622 * 59.99690 * 26 24 8 46 46 H 1.08998 * 109.47390 * 179.97438 * 26 24 8 47 47 H 1.08994 * 109.47132 * 300.00455 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0380 -0.7206 -1.2291 5 8 2.6034 -0.1189 -2.1104 6 6 1.8203 -2.2145 -1.3259 7 6 2.3284 -2.8654 -0.0352 8 6 1.6507 -2.2063 1.1673 9 1 0.5687 -2.2836 1.0607 10 6 2.0809 -2.9063 2.4307 11 8 3.1991 -3.3678 2.5176 12 7 1.2229 -3.0195 3.4639 13 6 1.6410 -3.7005 4.6918 14 6 0.4909 -3.6844 5.7008 15 6 0.9277 -4.3950 6.9834 16 6 -0.2054 -4.3796 7.9769 17 1 -1.1430 -3.9097 7.7194 18 6 -0.0449 -4.9656 9.2146 19 7 1.0971 -5.5375 9.5284 20 14 -1.4490 -4.9460 10.4464 21 1 -2.6171 -4.2458 9.8544 22 1 -1.8287 -6.3408 10.7864 23 1 -1.0177 -4.2363 11.6775 24 6 2.0501 -0.7317 1.2419 25 6 1.4418 -0.1010 2.4961 26 6 3.5748 -0.6183 1.3016 27 1 -0.3634 -1.0276 0.0069 28 1 -0.3633 0.5198 0.8865 29 1 -0.3634 0.5079 -0.8934 30 1 2.3729 -2.6106 -2.1778 31 1 0.7572 -2.4224 -1.4469 32 1 3.4078 -2.7331 0.0383 33 1 2.0924 -3.9295 -0.0473 34 1 0.3299 -2.6470 3.3958 35 1 1.9085 -4.7319 4.4622 36 1 2.5038 -3.1872 5.1162 37 1 0.2234 -2.6530 5.9303 38 1 -0.3720 -4.1977 5.2763 39 1 1.1954 -5.4264 6.7542 40 1 1.7904 -3.8813 7.4076 41 1 1.2099 -5.9501 10.3990 42 1 1.8953 -0.5448 3.3824 43 1 1.6299 0.9727 2.4908 44 1 0.3670 -0.2817 2.5089 45 1 4.0077 -1.0672 0.4076 46 1 3.8593 0.4325 1.3543 47 1 3.9436 -1.1397 2.1849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352419987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:49 Heat of formation + Delta-G solvation = -114.087406 kcal Electronic energy + Delta-G solvation = -24686.593738 eV Core-core repulsion = 21253.867619 eV Total energy + Delta-G solvation = -3432.726119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46070 -39.40386 -37.45421 -35.46697 -33.53225 -33.31233 -31.87082 -31.16406 -28.63291 -27.44366 -26.56649 -24.98597 -23.57854 -22.53817 -21.12638 -20.72834 -19.86259 -18.16721 -17.13724 -16.48923 -16.37837 -16.06142 -15.63559 -15.12411 -14.99177 -14.67670 -14.53193 -14.47179 -13.84231 -13.70407 -13.30249 -13.08108 -12.81280 -12.71257 -12.35025 -12.31907 -12.11519 -11.98241 -11.91154 -11.75963 -11.74589 -11.60341 -11.07664 -10.96338 -10.91187 -10.76974 -10.60420 -10.58144 -9.90806 -9.81080 -9.63002 -9.35655 -9.12697 -8.79853 -8.40746 -6.05092 -4.08307 1.63619 2.70433 3.27434 3.30447 3.35409 3.38671 3.71451 4.10310 4.23239 4.37935 4.41703 4.56364 4.65052 4.73806 4.87142 4.96768 5.02861 5.09119 5.18537 5.23995 5.30899 5.32882 5.44781 5.50160 5.53047 5.60478 5.63120 5.68697 5.72951 5.74992 5.77505 5.86046 5.95040 6.04296 6.12199 6.17419 6.45292 6.55592 6.79116 6.96551 7.16588 7.60182 7.67156 7.72306 7.93607 8.33091 8.37167 8.98698 9.56219 11.06211 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.002759 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.898590 B =10144.865416 C =10448.725754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 H 0.098 0.902 4 C 0.369 3.631 5 O -0.458 6.458 6 C -0.170 4.170 7 C -0.101 4.101 8 C -0.105 4.105 9 H 0.095 0.905 10 C 0.517 3.483 11 O -0.540 6.540 12 N -0.724 5.724 13 C 0.116 3.884 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.040 4.040 25 C -0.151 4.151 26 C -0.153 4.153 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.397 0.603 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 10.394 -20.862 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 H 0.116 0.884 4 C 0.244 3.756 5 O -0.331 6.331 6 C -0.207 4.207 7 C -0.138 4.138 8 C -0.126 4.126 9 H 0.114 0.886 10 C 0.302 3.698 11 O -0.417 6.417 12 N -0.375 5.375 13 C -0.007 4.007 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.041 4.041 25 C -0.209 4.209 26 C -0.210 4.210 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.493 10.271 -21.102 23.474 hybrid contribution -1.237 0.047 0.867 1.512 sum -1.731 10.318 -20.235 22.780 Atomic orbital electron populations 1.21863 0.92416 1.03010 1.03155 1.22008 0.98003 1.00860 0.93805 0.88380 1.24880 0.73804 0.91294 0.85604 1.90407 1.32183 1.70638 1.39864 1.22335 1.04085 0.94094 1.00214 1.21441 1.01994 0.99939 0.90467 1.21489 1.02082 0.95143 0.93896 0.88648 1.20329 0.85339 0.79561 0.84533 1.90699 1.20276 1.48408 1.82297 1.46315 1.16756 1.58554 1.15855 1.21645 0.98971 0.96852 0.83233 1.21880 0.95934 1.01196 0.96807 1.19030 0.96922 0.95534 0.89918 1.21236 0.99309 1.36431 0.99067 0.92605 1.25032 0.95716 0.95355 0.98376 1.69973 1.24024 1.37449 1.21808 0.86535 0.82416 0.77737 0.81288 1.19750 1.20994 1.20989 1.20409 0.96779 0.92252 0.94614 1.22056 1.01070 1.01189 0.96536 1.22064 0.93429 1.02044 1.03418 0.91540 0.90595 0.92135 0.88948 0.88178 0.89621 0.90151 0.76888 0.91809 0.91826 0.92759 0.92767 0.96314 0.96311 0.92958 0.91417 0.91833 0.91720 0.92372 0.92314 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.39 37.15 0.31 -0.50 16 2 C -0.13 -0.96 2.23 -91.37 -0.20 -1.17 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.37 3.41 5.09 -28.48 -0.14 3.26 16 5 O -0.46 -5.82 17.89 6.00 0.11 -5.71 16 6 C -0.17 -1.24 5.90 -27.48 -0.16 -1.40 16 7 C -0.10 -0.88 4.52 -26.63 -0.12 -1.00 16 8 C -0.10 -0.93 1.61 -91.81 -0.15 -1.07 16 9 H 0.10 0.62 6.40 -51.93 -0.33 0.29 16 10 C 0.52 6.60 5.15 -10.98 -0.06 6.54 16 11 O -0.54 -9.05 15.15 5.56 0.08 -8.96 16 12 N -0.72 -9.12 4.88 -60.29 -0.29 -9.42 16 13 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 14 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.04 -0.34 0.32 -154.41 -0.05 -0.38 16 25 C -0.15 -1.21 7.13 37.15 0.26 -0.94 16 26 C -0.15 -1.55 7.56 37.16 0.28 -1.27 16 27 H 0.07 0.30 6.00 -51.93 -0.31 -0.01 16 28 H 0.08 0.37 6.58 -51.93 -0.34 0.03 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.52 7.82 -51.93 -0.41 0.11 16 32 H 0.09 0.89 6.02 -51.93 -0.31 0.58 16 33 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.40 3.93 8.46 -40.82 -0.35 3.59 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.07 0.68 7.04 -51.93 -0.37 0.31 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.41 6.78 -51.93 -0.35 0.06 16 45 H 0.06 0.61 5.60 -51.93 -0.29 0.32 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.92 6.62 -51.93 -0.34 0.57 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.68 361.53 -7.70 -40.38 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.02 Total: -1.02 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.74 Total: -11.09 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.44 Total: -35.17 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.19 Total: -14.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.68 -7.70 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352419987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.709 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds