Wall clock time and date at job start Tue Mar 31 2020 07:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.62618 * 2 1 4 4 C 1.51265 * 109.62638 * 239.61666 * 2 1 3 5 5 O 1.20763 * 120.85202 * 111.46452 * 4 2 1 6 6 C 1.51272 * 118.30138 * 291.44492 * 4 2 1 7 7 C 1.53232 * 108.53255 * 308.65002 * 6 4 2 8 8 C 1.52961 * 109.40399 * 54.63013 * 7 6 4 9 9 H 1.08999 * 109.41261 * 56.43343 * 8 7 6 10 10 C 1.50707 * 109.41268 * 176.29448 * 8 7 6 11 11 O 1.21281 * 120.00020 * 33.34092 * 10 8 7 12 12 N 1.34776 * 119.99473 * 213.34255 * 10 8 7 13 13 C 1.46504 * 119.99391 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47076 * 179.72694 * 13 12 10 15 15 C 1.52998 * 109.46915 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46597 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99847 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99639 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00301 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47209 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47264 * 120.00391 * 20 18 16 23 23 H 1.48504 * 109.47613 * 240.00259 * 20 18 16 24 24 C 1.52956 * 109.75887 * 296.36314 * 8 7 6 25 25 C 1.52994 * 109.48427 * 183.61588 * 24 8 7 26 26 C 1.53008 * 109.48321 * 303.65425 * 24 8 7 27 27 H 1.08997 * 109.47539 * 180.38194 * 1 2 3 28 28 H 1.09000 * 109.47121 * 300.38716 * 1 2 3 29 29 H 1.09002 * 109.47340 * 60.38157 * 1 2 3 30 30 H 1.08998 * 109.62742 * 188.93940 * 6 4 2 31 31 H 1.08997 * 109.62679 * 68.36492 * 6 4 2 32 32 H 1.09000 * 109.48685 * 294.64690 * 7 6 4 33 33 H 1.09008 * 109.48189 * 174.60741 * 7 6 4 34 34 H 0.96997 * 120.00259 * 359.73208 * 12 10 8 35 35 H 1.09002 * 109.47040 * 299.72639 * 13 12 10 36 36 H 1.08996 * 109.47026 * 59.72833 * 13 12 10 37 37 H 1.08992 * 109.46700 * 300.00513 * 14 13 12 38 38 H 1.09008 * 109.46748 * 59.99994 * 14 13 12 39 39 H 1.08996 * 109.47212 * 299.99437 * 15 14 13 40 40 H 1.08996 * 109.47128 * 60.00174 * 15 14 13 41 41 H 0.96999 * 119.99980 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47463 * 66.43130 * 25 24 8 43 43 H 1.09005 * 109.47394 * 186.42722 * 25 24 8 44 44 H 1.08999 * 109.46970 * 306.43308 * 25 24 8 45 45 H 1.09004 * 109.46622 * 59.99690 * 26 24 8 46 46 H 1.08998 * 109.47390 * 179.97438 * 26 24 8 47 47 H 1.08994 * 109.47132 * 300.00455 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0380 -0.7206 -1.2291 5 8 2.6034 -0.1189 -2.1104 6 6 1.8203 -2.2145 -1.3259 7 6 2.3284 -2.8654 -0.0352 8 6 1.6507 -2.2063 1.1673 9 1 0.5687 -2.2836 1.0607 10 6 2.0809 -2.9063 2.4307 11 8 3.1991 -3.3678 2.5176 12 7 1.2229 -3.0195 3.4639 13 6 1.6410 -3.7005 4.6918 14 6 0.4909 -3.6844 5.7008 15 6 0.9277 -4.3950 6.9834 16 6 -0.2054 -4.3796 7.9769 17 1 -1.1430 -3.9097 7.7194 18 6 -0.0449 -4.9656 9.2146 19 7 1.0971 -5.5375 9.5284 20 14 -1.4490 -4.9460 10.4464 21 1 -2.6171 -4.2458 9.8544 22 1 -1.8287 -6.3408 10.7864 23 1 -1.0177 -4.2363 11.6775 24 6 2.0501 -0.7317 1.2419 25 6 1.4418 -0.1010 2.4961 26 6 3.5748 -0.6183 1.3016 27 1 -0.3634 -1.0276 0.0069 28 1 -0.3633 0.5198 0.8865 29 1 -0.3634 0.5079 -0.8934 30 1 2.3729 -2.6106 -2.1778 31 1 0.7572 -2.4224 -1.4469 32 1 3.4078 -2.7331 0.0383 33 1 2.0924 -3.9295 -0.0473 34 1 0.3299 -2.6470 3.3958 35 1 1.9085 -4.7319 4.4622 36 1 2.5038 -3.1872 5.1162 37 1 0.2234 -2.6530 5.9303 38 1 -0.3720 -4.1977 5.2763 39 1 1.1954 -5.4264 6.7542 40 1 1.7904 -3.8813 7.4076 41 1 1.2099 -5.9501 10.3990 42 1 1.8953 -0.5448 3.3824 43 1 1.6299 0.9727 2.4908 44 1 0.3670 -0.2817 2.5089 45 1 4.0077 -1.0672 0.4076 46 1 3.8593 0.4325 1.3543 47 1 3.9436 -1.1397 2.1849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352419987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:48 Heat of formation + Delta-G solvation = -134.587353 kcal Electronic energy + Delta-G solvation = -24687.482683 eV Core-core repulsion = 21253.867619 eV Total energy + Delta-G solvation = -3433.615063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25566 -40.37844 -38.34151 -36.89988 -35.17664 -34.16145 -33.10901 -32.29765 -29.65186 -28.20642 -28.05601 -25.64301 -25.07086 -23.51977 -22.27284 -22.00259 -20.90545 -18.95573 -18.48188 -18.03181 -17.25947 -16.96646 -16.64362 -16.44245 -16.26363 -15.77369 -15.72842 -15.25208 -14.86305 -14.61216 -14.35376 -14.18146 -13.77635 -13.71308 -13.55543 -13.43019 -13.30341 -12.90321 -12.85627 -12.76198 -12.63060 -12.52001 -12.48173 -12.31806 -12.26365 -11.78987 -11.68190 -11.62734 -11.51289 -11.26176 -11.19031 -10.59448 -10.55158 -10.33247 -10.00185 -8.18581 -6.29863 0.92602 1.42726 1.43094 1.56027 1.67789 2.24716 2.43907 3.06555 3.15617 3.40898 3.53719 3.64256 3.84648 4.03567 4.05870 4.19085 4.23137 4.25918 4.27103 4.37974 4.49012 4.58161 4.59294 4.64849 4.71438 4.81079 4.87275 4.91763 4.97904 4.98071 5.03344 5.05463 5.12559 5.15506 5.18434 5.20559 5.31436 5.36054 5.48493 5.51546 5.57222 5.73310 5.86222 6.23685 6.47105 6.66440 6.88711 7.34534 7.40135 8.93743 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.002759 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.898590 B =10144.865416 C =10448.725754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 H 0.094 0.906 4 C 0.369 3.631 5 O -0.499 6.499 6 C -0.162 4.162 7 C -0.099 4.099 8 C -0.096 4.096 9 H 0.134 0.866 10 C 0.517 3.483 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.130 3.870 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.538 4.538 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.256 1.256 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.034 4.034 25 C -0.151 4.151 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.069 0.931 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.262 0.738 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 11.435 -21.745 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 H 0.113 0.887 4 C 0.247 3.753 5 O -0.375 6.375 6 C -0.200 4.200 7 C -0.137 4.137 8 C -0.117 4.117 9 H 0.152 0.848 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.363 5.363 13 C 0.006 3.994 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.791 3.209 21 H -0.180 1.180 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.034 4.034 25 C -0.208 4.208 26 C -0.209 4.209 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.253 0.747 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.918 11.331 -22.000 25.055 hybrid contribution -0.090 -0.287 1.137 1.176 sum -4.008 11.045 -20.863 23.944 Atomic orbital electron populations 1.21929 0.90038 1.04413 1.04048 1.21960 0.99815 1.00148 0.92039 0.88749 1.25354 0.72356 0.92197 0.85393 1.90404 1.34042 1.71576 1.41502 1.22332 1.06070 0.92420 0.99156 1.21396 1.00674 1.00444 0.91193 1.21546 1.04220 0.94611 0.91332 0.84833 1.21030 0.84465 0.78711 0.85354 1.90691 1.22334 1.50254 1.83136 1.46060 1.17715 1.58091 1.14453 1.21177 0.97615 0.96166 0.84445 1.21580 0.96723 1.01247 0.94272 1.18951 0.95566 0.94327 0.92658 1.21727 1.00203 1.35967 0.99673 0.91369 1.26026 0.98415 0.94976 1.00787 1.70121 1.26446 1.38643 1.22500 0.85382 0.79304 0.77855 0.78395 1.17976 1.20711 1.20740 1.20358 0.95227 0.92178 0.95680 1.22073 1.02363 1.01498 0.94892 1.22046 0.95326 1.01899 1.01669 0.89851 0.89309 0.91767 0.88983 0.84847 0.92062 0.89681 0.74734 0.93499 0.93696 0.91253 0.91205 0.99149 0.99206 0.92885 0.93744 0.90990 0.89141 0.93242 0.91702 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.39 71.98 0.60 -0.38 16 2 C -0.12 -1.51 2.23 -11.28 -0.03 -1.54 16 3 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 4 C 0.37 6.19 5.09 29.46 0.15 6.33 16 5 O -0.50 -12.41 17.89 -1.46 -0.03 -12.44 16 6 C -0.16 -1.98 5.90 30.11 0.18 -1.80 16 7 C -0.10 -1.58 4.52 30.66 0.14 -1.45 16 8 C -0.10 -1.47 1.61 -11.57 -0.02 -1.49 16 9 H 0.13 1.07 6.40 -2.39 -0.02 1.06 16 10 C 0.52 12.70 5.15 87.66 0.45 13.15 16 11 O -0.58 -20.10 15.15 -3.03 -0.05 -20.14 16 12 N -0.71 -16.73 4.88 -463.04 -2.26 -18.99 16 13 C 0.13 4.28 5.67 86.38 0.49 4.78 16 14 C -0.10 -3.62 5.27 30.60 0.16 -3.46 16 15 C 0.02 1.15 4.97 29.85 0.15 1.30 16 16 C -0.54 -29.27 9.11 25.60 0.23 -29.03 16 17 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 19 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 20 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C -0.03 -0.51 0.32 -52.12 -0.02 -0.52 16 25 C -0.15 -2.03 7.13 71.98 0.51 -1.52 16 26 C -0.15 -3.15 7.56 71.98 0.54 -2.61 16 27 H 0.08 0.29 6.00 -2.39 -0.01 0.27 16 28 H 0.09 0.42 6.58 -2.39 -0.02 0.40 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.13 0.78 7.82 -2.39 -0.02 0.76 16 32 H 0.06 1.29 6.02 -2.39 -0.01 1.28 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 34 H 0.42 6.76 8.46 -92.71 -0.78 5.97 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.04 0.83 7.04 -2.39 -0.02 0.81 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.09 0.75 6.78 -2.39 -0.02 0.73 16 45 H 0.05 1.09 5.60 -2.39 -0.01 1.07 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.24 6.62 -2.39 -0.02 1.22 16 Total: -1.00 -74.19 361.53 4.16 -70.03 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.17 Total: 10.95 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.01 Total: -18.03 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.97 Total: -75.39 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.07 Total: -32.58 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.19 4.16 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352419987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.557 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds