Wall clock time and date at job start Tue Mar 31 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.62590 * 2 1 4 4 C 1.51272 * 109.62312 * 120.38071 * 2 1 3 5 5 O 1.20763 * 120.84856 * 248.53278 * 4 2 1 6 6 C 1.51265 * 118.30090 * 68.80800 * 4 2 1 7 7 C 1.52794 * 108.76508 * 51.03862 * 6 4 2 8 8 C 1.52969 * 109.48441 * 305.60919 * 7 6 4 9 9 H 1.09002 * 109.40664 * 303.36031 * 8 7 6 10 10 C 1.50699 * 109.35560 * 183.53720 * 8 7 6 11 11 O 1.21281 * 119.99974 * 263.27990 * 10 8 7 12 12 N 1.34776 * 120.00081 * 83.28995 * 10 8 7 13 13 C 1.46500 * 119.99939 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47180 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47426 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47195 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00199 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99692 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47107 * 120.00213 * 20 18 16 23 23 H 1.48504 * 109.46824 * 240.00103 * 20 18 16 24 24 C 1.52956 * 109.81381 * 63.46220 * 8 7 6 25 25 C 1.53005 * 109.47837 * 176.42494 * 24 8 7 26 26 C 1.52997 * 109.49590 * 56.39716 * 24 8 7 27 27 H 1.09004 * 109.46980 * 299.62356 * 1 2 3 28 28 H 1.09001 * 109.47281 * 59.61817 * 1 2 3 29 29 H 1.08998 * 109.47708 * 179.61899 * 1 2 3 30 30 H 1.09005 * 109.62595 * 170.81053 * 6 4 2 31 31 H 1.08993 * 109.62941 * 291.38151 * 6 4 2 32 32 H 1.09000 * 109.55374 * 185.53883 * 7 6 4 33 33 H 1.09003 * 109.33973 * 65.54374 * 7 6 4 34 34 H 0.97002 * 119.99928 * 359.97438 * 12 10 8 35 35 H 1.08999 * 109.47198 * 299.99805 * 13 12 10 36 36 H 1.09005 * 109.47094 * 59.99873 * 13 12 10 37 37 H 1.08999 * 109.47355 * 300.00272 * 14 13 12 38 38 H 1.09004 * 109.47187 * 59.99916 * 14 13 12 39 39 H 1.08999 * 109.46595 * 300.00071 * 15 14 13 40 40 H 1.08996 * 109.46789 * 60.00335 * 15 14 13 41 41 H 0.97007 * 119.99695 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.47028 * 178.62813 * 25 24 8 43 43 H 1.08999 * 109.47109 * 298.62362 * 25 24 8 44 44 H 1.09003 * 109.46916 * 58.62491 * 25 24 8 45 45 H 1.09007 * 109.46781 * 300.05712 * 26 24 8 46 46 H 1.09000 * 109.47436 * 60.05150 * 26 24 8 47 47 H 1.08997 * 109.47385 * 180.02562 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0380 -0.7206 1.2292 5 8 2.6034 -0.1188 2.1104 6 6 1.8254 -2.2153 1.3234 7 6 2.3284 -2.8655 0.0355 8 6 1.6507 -2.2064 -1.1672 9 1 0.5687 -2.2848 -1.0612 10 6 2.0825 -2.9069 -2.4297 11 8 2.9893 -2.4532 -3.0951 12 7 1.4609 -4.0374 -2.8194 13 6 1.8803 -4.7181 -4.0470 14 6 1.0200 -5.9656 -4.2578 15 6 1.4584 -6.6769 -5.5396 16 6 0.6107 -7.9053 -5.7475 17 1 -0.1632 -8.1542 -5.0364 18 6 0.8229 -8.7116 -6.8457 19 7 1.7649 -8.4083 -7.7118 20 14 -0.2284 -10.2339 -7.1038 21 1 -1.2104 -10.3510 -5.9959 22 1 -0.9507 -10.1233 -8.3966 23 1 0.6406 -11.4380 -7.1237 24 6 2.0486 -0.7314 -1.2425 25 6 1.4390 -0.1019 -2.4968 26 6 3.5730 -0.6162 -1.3033 27 1 -0.3633 0.5080 0.8934 28 1 -0.3634 0.5198 -0.8865 29 1 -0.3634 -1.0276 -0.0068 30 1 2.3812 -2.6113 2.1734 31 1 0.7633 -2.4270 1.4463 32 1 2.0923 -3.9295 0.0476 33 1 3.4078 -2.7332 -0.0380 34 1 0.7357 -4.4004 -2.2871 35 1 1.7586 -4.0448 -4.8955 36 1 2.9272 -5.0093 -3.9615 37 1 1.1421 -6.6388 -3.4093 38 1 -0.0270 -5.6748 -4.3432 39 1 1.3367 -6.0039 -6.3883 40 1 2.5053 -6.9678 -5.4537 41 1 1.9144 -8.9758 -8.4843 42 1 1.7024 0.9550 -2.5375 43 1 1.8260 -0.6071 -3.3817 44 1 0.3543 -0.2051 -2.4646 45 1 4.0072 -1.0652 -0.4099 46 1 3.9418 -1.1366 -2.1873 47 1 3.8562 0.4350 -1.3565 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352419988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:52 Heat of formation + Delta-G solvation = -108.246006 kcal Electronic energy + Delta-G solvation = -24584.711529 eV Core-core repulsion = 21152.238712 eV Total energy + Delta-G solvation = -3432.472817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47097 -39.42974 -37.40075 -35.43689 -33.80516 -33.21950 -31.62145 -31.24396 -28.62084 -27.38735 -26.47021 -24.96368 -23.48064 -22.73374 -21.04324 -20.74351 -19.89278 -18.20845 -17.21203 -16.53214 -16.23283 -15.92433 -15.53243 -15.20274 -14.93322 -14.73778 -14.52398 -14.46677 -14.07474 -13.68052 -13.30196 -13.13249 -12.82696 -12.68311 -12.33688 -12.18262 -11.99495 -11.94380 -11.88291 -11.77949 -11.73190 -11.39276 -11.05779 -10.94585 -10.87100 -10.76800 -10.59984 -10.53685 -9.91500 -9.68850 -9.60007 -9.25530 -9.10569 -8.82565 -8.41140 -6.05497 -4.08719 1.65055 2.67678 3.27265 3.28140 3.35166 3.38442 3.73378 4.11409 4.28607 4.40883 4.47426 4.52155 4.67140 4.79244 4.89747 4.98949 5.02017 5.13809 5.19064 5.30521 5.31183 5.37874 5.47543 5.53182 5.58972 5.64860 5.66139 5.70239 5.72563 5.78453 5.86067 5.91057 6.05838 6.11018 6.21221 6.31038 6.54619 6.59156 6.80184 6.96392 7.18019 7.59591 7.64960 7.71638 7.93129 8.32937 8.37129 8.98246 9.55843 11.05793 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031151 B = 0.002666 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.631231 B =10499.094050 C =10742.637594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 H 0.097 0.903 4 C 0.370 3.630 5 O -0.458 6.458 6 C -0.168 4.168 7 C -0.108 4.108 8 C -0.106 4.106 9 H 0.097 0.903 10 C 0.516 3.484 11 O -0.533 6.533 12 N -0.724 5.724 13 C 0.116 3.884 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.030 4.030 25 C -0.150 4.150 26 C -0.168 4.168 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.106 0.894 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 15.774 16.984 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 H 0.115 0.885 4 C 0.245 3.755 5 O -0.331 6.331 6 C -0.206 4.206 7 C -0.146 4.146 8 C -0.127 4.127 9 H 0.115 0.885 10 C 0.302 3.698 11 O -0.411 6.411 12 N -0.374 5.374 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.030 4.030 25 C -0.207 4.207 26 C -0.224 4.224 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.124 0.876 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.890 16.345 16.787 23.506 hybrid contribution -0.987 -1.136 -0.011 1.505 sum -2.877 15.209 16.776 22.826 Atomic orbital electron populations 1.21863 0.92629 1.02899 1.02993 1.22048 0.97845 1.00981 0.94105 0.88523 1.24868 0.73784 0.91241 0.85623 1.90405 1.32202 1.70673 1.39858 1.22224 1.04206 0.94228 0.99910 1.21460 1.01763 1.00134 0.91198 1.21476 1.02082 0.95537 0.93618 0.88452 1.20368 0.82413 0.80645 0.86353 1.90565 1.29760 1.64954 1.55825 1.46288 1.37761 1.26085 1.27304 1.21650 0.99523 0.94476 0.85026 1.21885 0.98238 0.94113 1.01637 1.19030 0.96933 0.94820 0.90619 1.21237 1.17904 1.08725 1.08207 0.92605 1.25032 0.95397 0.98029 0.96018 1.69975 1.31853 1.38521 1.12894 0.86533 0.80351 0.83009 0.78075 1.19749 1.20982 1.20989 1.20258 0.97048 0.91845 0.93895 1.22038 1.00289 1.00906 0.97507 1.22404 0.93412 1.02121 1.04483 0.92259 0.90691 0.91635 0.88910 0.88058 0.89857 0.90093 0.76884 0.91745 0.91769 0.92762 0.92753 0.96300 0.96304 0.92956 0.92399 0.90586 0.92467 0.93498 0.87584 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.38 37.16 0.31 -0.58 16 2 C -0.13 -1.06 2.23 -91.38 -0.20 -1.26 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.37 3.48 5.10 -28.48 -0.15 3.34 16 5 O -0.46 -5.93 17.89 6.00 0.11 -5.82 16 6 C -0.17 -1.18 5.88 -27.71 -0.16 -1.34 16 7 C -0.11 -0.84 4.91 -26.85 -0.13 -0.97 16 8 C -0.11 -0.92 1.62 -91.81 -0.15 -1.07 16 9 H 0.10 0.64 6.42 -51.93 -0.33 0.31 16 10 C 0.52 6.38 6.13 -10.99 -0.07 6.31 16 11 O -0.53 -8.41 11.97 5.56 0.07 -8.34 16 12 N -0.72 -8.98 5.56 -60.29 -0.33 -9.31 16 13 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 14 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.03 -0.27 0.29 -154.41 -0.05 -0.32 16 25 C -0.15 -1.41 7.58 37.16 0.28 -1.13 16 26 C -0.17 -1.82 7.60 37.16 0.28 -1.54 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.42 6.46 -51.93 -0.34 0.08 16 29 H 0.06 0.33 6.02 -51.93 -0.31 0.02 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.50 7.84 -51.93 -0.41 0.09 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.74 6.20 -51.93 -0.32 0.42 16 34 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.91 6.15 -51.93 -0.32 0.59 16 44 H 0.06 0.45 6.47 -51.93 -0.34 0.12 16 45 H 0.05 0.50 5.61 -51.92 -0.29 0.21 16 46 H 0.11 1.40 5.14 -51.93 -0.27 1.14 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -32.19 358.29 -7.67 -39.86 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.88 Total: -0.47 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.74 Total: -11.72 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.40 Total: -35.01 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.17 Total: -14.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.19 -7.67 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352419988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.385 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds