Wall clock time and date at job start Tue Mar 31 2020 07:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.62590 * 2 1 4 4 C 1.51272 * 109.62312 * 120.38071 * 2 1 3 5 5 O 1.20763 * 120.84856 * 248.53278 * 4 2 1 6 6 C 1.51265 * 118.30090 * 68.80800 * 4 2 1 7 7 C 1.52794 * 108.76508 * 51.03862 * 6 4 2 8 8 C 1.52969 * 109.48441 * 305.60919 * 7 6 4 9 9 H 1.09002 * 109.40664 * 303.36031 * 8 7 6 10 10 C 1.50699 * 109.35560 * 183.53720 * 8 7 6 11 11 O 1.21281 * 119.99974 * 263.27990 * 10 8 7 12 12 N 1.34776 * 120.00081 * 83.28995 * 10 8 7 13 13 C 1.46500 * 119.99939 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47180 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47426 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47195 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00199 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99692 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99643 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47107 * 120.00213 * 20 18 16 23 23 H 1.48504 * 109.46824 * 240.00103 * 20 18 16 24 24 C 1.52956 * 109.81381 * 63.46220 * 8 7 6 25 25 C 1.53005 * 109.47837 * 176.42494 * 24 8 7 26 26 C 1.52997 * 109.49590 * 56.39716 * 24 8 7 27 27 H 1.09004 * 109.46980 * 299.62356 * 1 2 3 28 28 H 1.09001 * 109.47281 * 59.61817 * 1 2 3 29 29 H 1.08998 * 109.47708 * 179.61899 * 1 2 3 30 30 H 1.09005 * 109.62595 * 170.81053 * 6 4 2 31 31 H 1.08993 * 109.62941 * 291.38151 * 6 4 2 32 32 H 1.09000 * 109.55374 * 185.53883 * 7 6 4 33 33 H 1.09003 * 109.33973 * 65.54374 * 7 6 4 34 34 H 0.97002 * 119.99928 * 359.97438 * 12 10 8 35 35 H 1.08999 * 109.47198 * 299.99805 * 13 12 10 36 36 H 1.09005 * 109.47094 * 59.99873 * 13 12 10 37 37 H 1.08999 * 109.47355 * 300.00272 * 14 13 12 38 38 H 1.09004 * 109.47187 * 59.99916 * 14 13 12 39 39 H 1.08999 * 109.46595 * 300.00071 * 15 14 13 40 40 H 1.08996 * 109.46789 * 60.00335 * 15 14 13 41 41 H 0.97007 * 119.99695 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.47028 * 178.62813 * 25 24 8 43 43 H 1.08999 * 109.47109 * 298.62362 * 25 24 8 44 44 H 1.09003 * 109.46916 * 58.62491 * 25 24 8 45 45 H 1.09007 * 109.46781 * 300.05712 * 26 24 8 46 46 H 1.09000 * 109.47436 * 60.05150 * 26 24 8 47 47 H 1.08997 * 109.47385 * 180.02562 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0380 -0.7206 1.2292 5 8 2.6034 -0.1188 2.1104 6 6 1.8254 -2.2153 1.3234 7 6 2.3284 -2.8655 0.0355 8 6 1.6507 -2.2064 -1.1672 9 1 0.5687 -2.2848 -1.0612 10 6 2.0825 -2.9069 -2.4297 11 8 2.9893 -2.4532 -3.0951 12 7 1.4609 -4.0374 -2.8194 13 6 1.8803 -4.7181 -4.0470 14 6 1.0200 -5.9656 -4.2578 15 6 1.4584 -6.6769 -5.5396 16 6 0.6107 -7.9053 -5.7475 17 1 -0.1632 -8.1542 -5.0364 18 6 0.8229 -8.7116 -6.8457 19 7 1.7649 -8.4083 -7.7118 20 14 -0.2284 -10.2339 -7.1038 21 1 -1.2104 -10.3510 -5.9959 22 1 -0.9507 -10.1233 -8.3966 23 1 0.6406 -11.4380 -7.1237 24 6 2.0486 -0.7314 -1.2425 25 6 1.4390 -0.1019 -2.4968 26 6 3.5730 -0.6162 -1.3033 27 1 -0.3633 0.5080 0.8934 28 1 -0.3634 0.5198 -0.8865 29 1 -0.3634 -1.0276 -0.0068 30 1 2.3812 -2.6113 2.1734 31 1 0.7633 -2.4270 1.4463 32 1 2.0923 -3.9295 0.0476 33 1 3.4078 -2.7332 -0.0380 34 1 0.7357 -4.4004 -2.2871 35 1 1.7586 -4.0448 -4.8955 36 1 2.9272 -5.0093 -3.9615 37 1 1.1421 -6.6388 -3.4093 38 1 -0.0270 -5.6748 -4.3432 39 1 1.3367 -6.0039 -6.3883 40 1 2.5053 -6.9678 -5.4537 41 1 1.9144 -8.9758 -8.4843 42 1 1.7024 0.9550 -2.5375 43 1 1.8260 -0.6071 -3.3817 44 1 0.3543 -0.2051 -2.4646 45 1 4.0072 -1.0652 -0.4099 46 1 3.9418 -1.1366 -2.1873 47 1 3.8562 0.4350 -1.3565 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352419988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:51 Heat of formation + Delta-G solvation = -128.434306 kcal Electronic energy + Delta-G solvation = -24585.586959 eV Core-core repulsion = 21152.238712 eV Total energy + Delta-G solvation = -3433.348247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.26954 -40.37488 -38.30876 -36.81980 -35.22216 -34.30263 -32.94616 -32.25622 -29.66521 -28.27359 -27.90660 -25.64082 -24.98746 -23.63197 -22.26987 -21.93887 -20.93440 -18.99399 -18.47365 -18.09141 -17.18472 -16.76564 -16.55060 -16.52395 -16.16261 -15.88304 -15.63414 -15.32372 -15.09863 -14.63740 -14.33028 -14.02900 -13.86398 -13.71617 -13.55756 -13.50664 -13.28361 -12.84021 -12.75141 -12.68752 -12.56538 -12.52098 -12.46623 -12.32049 -12.21136 -11.79774 -11.63361 -11.60447 -11.49034 -11.22629 -11.17130 -10.55062 -10.36400 -10.26920 -9.98993 -8.18596 -6.29814 0.93420 1.42728 1.43135 1.56025 1.69955 2.25072 2.43942 3.08039 3.15617 3.40398 3.60541 3.70670 3.84160 4.06593 4.12394 4.17421 4.24082 4.26524 4.35077 4.38689 4.48812 4.58212 4.60104 4.69759 4.81010 4.82595 4.91016 4.92790 4.98968 5.00450 5.02914 5.04803 5.13833 5.15881 5.20858 5.22685 5.36040 5.40381 5.52604 5.54136 5.71227 5.73661 5.86412 6.23919 6.47941 6.68314 6.88800 7.39059 7.40484 8.93675 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031151 B = 0.002666 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.631231 B =10499.094050 C =10742.637594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 H 0.087 0.913 4 C 0.369 3.631 5 O -0.501 6.501 6 C -0.161 4.161 7 C -0.105 4.105 8 C -0.097 4.097 9 H 0.134 0.866 10 C 0.515 3.485 11 O -0.571 6.571 12 N -0.713 5.713 13 C 0.131 3.869 14 C -0.101 4.101 15 C 0.023 3.977 16 C -0.538 4.538 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.027 4.027 25 C -0.148 4.148 26 C -0.166 4.166 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.416 0.584 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.069 0.931 39 H -0.009 1.009 40 H -0.010 1.010 41 H 0.262 0.738 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 15.113 18.901 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 H 0.105 0.895 4 C 0.247 3.753 5 O -0.377 6.377 6 C -0.198 4.198 7 C -0.143 4.143 8 C -0.118 4.118 9 H 0.151 0.849 10 C 0.302 3.698 11 O -0.451 6.451 12 N -0.365 5.365 13 C 0.007 3.993 14 C -0.139 4.139 15 C -0.015 4.015 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.790 3.210 21 H -0.180 1.180 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.027 4.027 25 C -0.205 4.205 26 C -0.223 4.223 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.099 0.901 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.810 15.682 18.733 24.899 hybrid contribution -0.010 -0.876 -0.644 1.087 sum -4.819 14.806 18.089 23.867 Atomic orbital electron populations 1.21913 0.90352 1.04377 1.03670 1.21990 0.99612 1.00119 0.92712 0.89455 1.25359 0.72278 0.92491 0.85127 1.90401 1.34108 1.71737 1.41436 1.22238 1.06347 0.91960 0.99292 1.21453 1.00541 1.01267 0.91027 1.21515 1.04176 0.94420 0.91657 0.84867 1.21044 0.81541 0.80145 0.87045 1.90582 1.31424 1.65811 1.57248 1.46039 1.38341 1.26013 1.26126 1.21170 0.98164 0.93579 0.86418 1.21585 0.99062 0.94550 0.98722 1.18951 0.95216 0.94445 0.92895 1.21730 1.18165 1.09389 1.08347 0.91423 1.26022 0.96713 1.01612 0.95835 1.70120 1.33815 1.40100 1.13635 0.85386 0.78661 0.78551 0.78359 1.18016 1.20689 1.20740 1.20212 0.95515 0.92549 0.94474 1.22003 1.01478 1.00782 0.96213 1.22343 0.95284 1.01601 1.03050 0.91760 0.89962 0.89712 0.88679 0.84633 0.87952 0.92114 0.74736 0.93412 0.93567 0.91331 0.91258 0.99107 0.99171 0.92880 0.92032 0.93498 0.90306 0.93766 0.90097 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.38 71.98 0.60 -0.62 16 2 C -0.13 -1.77 2.23 -11.28 -0.03 -1.80 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.37 6.27 5.10 29.46 0.15 6.42 16 5 O -0.50 -12.64 17.89 -1.46 -0.03 -12.66 16 6 C -0.16 -1.74 5.88 29.96 0.18 -1.56 16 7 C -0.11 -1.36 4.91 30.52 0.15 -1.21 16 8 C -0.10 -1.43 1.62 -11.57 -0.02 -1.44 16 9 H 0.13 1.07 6.42 -2.39 -0.02 1.05 16 10 C 0.51 12.08 6.13 87.66 0.54 12.62 16 11 O -0.57 -18.39 11.97 -3.03 -0.04 -18.42 16 12 N -0.71 -16.28 5.56 -463.06 -2.57 -18.86 16 13 C 0.13 4.23 5.67 86.38 0.49 4.72 16 14 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 15 C 0.02 1.14 4.97 29.85 0.15 1.29 16 16 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 17 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.94 -56.54 13.29 21.45 0.28 -56.26 16 20 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 C -0.03 -0.45 0.29 -52.12 -0.02 -0.47 16 25 C -0.15 -2.58 7.58 71.98 0.55 -2.03 16 26 C -0.17 -3.70 7.60 71.98 0.55 -3.15 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.08 0.61 6.46 -2.39 -0.02 0.59 16 29 H 0.08 0.39 6.02 -2.39 -0.01 0.38 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.14 0.60 7.84 -2.39 -0.02 0.58 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.06 6.20 -2.39 -0.01 1.04 16 34 H 0.42 6.49 8.47 -92.71 -0.79 5.70 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.29 8.14 -2.38 -0.02 2.28 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 1.12 6.15 -2.39 -0.01 1.10 16 44 H 0.08 1.02 6.47 -2.39 -0.02 1.00 16 45 H 0.04 0.98 5.61 -2.38 -0.01 0.96 16 46 H 0.08 2.27 5.14 -2.39 -0.01 2.25 16 47 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -73.00 358.29 4.00 -69.01 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.17 Total: 11.75 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.14 Total: -19.54 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.29 Total: -75.11 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.06 Total: -31.09 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.00 4.00 -69.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352419988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.428 kcal (2) G-P(sol) polarization free energy of solvation -73.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds