Wall clock time and date at job start Tue Mar 31 2020 07:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.78312 * 2 1 4 4 C 1.51266 * 109.62763 * 239.52177 * 2 1 3 5 5 O 1.20759 * 120.85202 * 8.91254 * 4 2 1 6 6 C 1.51274 * 118.29897 * 189.19242 * 4 2 1 7 7 C 1.52798 * 108.76528 * 51.03607 * 6 4 2 8 8 C 1.52961 * 109.48496 * 305.60797 * 7 6 4 9 9 H 1.09002 * 109.40994 * 303.36758 * 8 7 6 10 10 C 1.50700 * 109.41353 * 183.57521 * 8 7 6 11 11 O 1.21279 * 119.99914 * 263.32455 * 10 8 7 12 12 N 1.34776 * 119.99826 * 83.32556 * 10 8 7 13 13 C 1.46497 * 119.99412 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.46881 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47319 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00209 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00023 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00008 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99867 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47071 * 90.00023 * 20 18 16 22 22 H 1.48504 * 109.47111 * 209.99864 * 20 18 16 23 23 H 1.48494 * 109.47367 * 330.00207 * 20 18 16 24 24 C 1.52964 * 109.81575 * 63.46411 * 8 7 6 25 25 C 1.52995 * 109.48023 * 176.42300 * 24 8 7 26 26 C 1.52999 * 109.48967 * 56.39298 * 24 8 7 27 27 H 1.09000 * 109.47323 * 180.47610 * 1 2 3 28 28 H 1.08999 * 109.47601 * 300.48197 * 1 2 3 29 29 H 1.09001 * 109.47076 * 60.47830 * 1 2 3 30 30 H 1.09005 * 109.62456 * 170.81284 * 6 4 2 31 31 H 1.09000 * 109.62626 * 291.37632 * 6 4 2 32 32 H 1.09002 * 109.54582 * 185.53988 * 7 6 4 33 33 H 1.09004 * 109.33361 * 65.54626 * 7 6 4 34 34 H 0.96992 * 120.00451 * 359.97438 * 12 10 8 35 35 H 1.09000 * 109.47496 * 299.99732 * 13 12 10 36 36 H 1.09007 * 109.47322 * 60.00525 * 13 12 10 37 37 H 1.09003 * 109.47723 * 300.00209 * 14 13 12 38 38 H 1.08998 * 109.47127 * 60.00198 * 14 13 12 39 39 H 1.08995 * 109.47202 * 300.00588 * 15 14 13 40 40 H 1.09007 * 109.46900 * 60.00701 * 15 14 13 41 41 H 0.96998 * 119.99984 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46986 * 182.05662 * 25 24 8 43 43 H 1.08999 * 109.47200 * 302.05713 * 25 24 8 44 44 H 1.09004 * 109.47266 * 62.05277 * 25 24 8 45 45 H 1.09006 * 109.47116 * 300.06043 * 26 24 8 46 46 H 1.08995 * 109.47480 * 60.05567 * 26 24 8 47 47 H 1.08994 * 109.47222 * 180.02562 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0381 -0.7227 -1.2279 5 8 1.2814 -1.0546 -2.1086 6 6 3.5174 -1.0246 -1.3215 7 6 3.9608 -1.7145 -0.0322 8 6 3.5676 -0.8528 1.1688 9 1 4.0048 0.1398 1.0611 10 6 4.0825 -1.4910 2.4332 11 8 3.3511 -2.1919 3.1000 12 7 5.3557 -1.2828 2.8229 13 6 5.8560 -1.9027 4.0523 14 6 7.3195 -1.5094 4.2628 15 6 7.8419 -2.1563 5.5471 16 6 9.2836 -1.7693 5.7541 17 1 9.7778 -1.1260 5.0412 18 6 9.9718 -2.2367 6.8537 19 7 9.3703 -3.0205 7.7216 20 14 11.7587 -1.7564 7.1105 21 1 11.8253 -0.5069 7.9102 22 1 12.4648 -2.8448 7.8331 23 1 12.4063 -1.5357 5.7927 24 6 2.0446 -0.7320 1.2439 25 6 1.6564 0.0558 2.4967 26 6 1.4241 -2.1291 1.3071 27 1 -0.3634 -1.0276 0.0085 28 1 -0.3634 0.5213 0.8856 29 1 -0.3633 0.5064 -0.8942 30 1 3.7037 -1.6826 -2.1703 31 1 4.0735 -0.0955 -1.4461 32 1 5.0423 -1.8496 -0.0443 33 1 3.4735 -2.6867 0.0428 34 1 5.9408 -0.7225 2.2895 35 1 5.2620 -1.5604 4.8997 36 1 5.7800 -2.9870 3.9695 37 1 7.9134 -1.8519 3.4154 38 1 7.3961 -0.4252 4.3454 39 1 7.2480 -1.8133 6.3943 40 1 7.7654 -3.2406 5.4649 41 1 9.8545 -3.3496 8.4949 42 1 0.5702 0.1105 2.5695 43 1 2.0549 -0.4451 3.3789 44 1 2.0676 1.0634 2.4343 45 1 1.7012 -2.6904 0.4147 46 1 1.7903 -2.6496 2.1919 47 1 0.3389 -2.0426 1.3601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352419990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:57 Heat of formation + Delta-G solvation = -107.675424 kcal Electronic energy + Delta-G solvation = -24501.737842 eV Core-core repulsion = 21069.289768 eV Total energy + Delta-G solvation = -3432.448074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42089 -39.46360 -37.29499 -35.41255 -34.13920 -33.28079 -31.37053 -31.00027 -28.23771 -27.50794 -26.40491 -25.78521 -23.43359 -22.23982 -20.91975 -20.74038 -19.74302 -18.43563 -17.02982 -16.54126 -16.20836 -16.04753 -15.56051 -15.47465 -15.12298 -14.83476 -14.47549 -14.08724 -13.95100 -13.53722 -13.45704 -12.90244 -12.83260 -12.53635 -12.33783 -12.21340 -12.06180 -11.90619 -11.82005 -11.70955 -11.57640 -11.42300 -10.97427 -10.93033 -10.83019 -10.76658 -10.65599 -10.61194 -9.91038 -9.67722 -9.59962 -9.25883 -9.11198 -8.82484 -8.40648 -6.05259 -4.08559 1.67206 2.67698 3.27727 3.28236 3.34950 3.37626 3.72081 4.16876 4.30150 4.40725 4.44969 4.53786 4.76785 4.82780 4.91021 4.99805 5.09419 5.14626 5.21974 5.30602 5.30909 5.47171 5.49173 5.63289 5.66526 5.67239 5.70119 5.71641 5.72645 5.79727 5.88220 5.93108 6.07814 6.11087 6.21586 6.32651 6.54707 6.60532 6.80456 6.96502 7.21583 7.59474 7.65058 7.71761 7.93261 8.33022 8.37161 8.98187 9.55903 11.06020 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.034509 B = 0.002604 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.179344 B =10749.568579 C =11126.524613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 H 0.103 0.897 4 C 0.366 3.634 5 O -0.455 6.455 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.105 4.105 9 H 0.095 0.905 10 C 0.517 3.483 11 O -0.533 6.533 12 N -0.724 5.724 13 C 0.116 3.884 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.028 4.028 25 C -0.149 4.149 26 C -0.169 4.169 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.398 0.602 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.104 0.896 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 7.421 -17.046 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 H 0.121 0.879 4 C 0.241 3.759 5 O -0.327 6.327 6 C -0.206 4.206 7 C -0.145 4.145 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.302 3.698 11 O -0.411 6.411 12 N -0.374 5.374 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.029 4.029 25 C -0.206 4.206 26 C -0.225 4.225 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.123 0.877 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.549 6.621 -16.846 23.862 hybrid contribution 1.504 0.628 0.008 1.630 sum -14.045 7.249 -16.838 23.094 Atomic orbital electron populations 1.21750 0.92999 1.03068 1.02047 1.21963 0.98195 1.00705 0.94223 0.87894 1.24878 0.90734 0.74575 0.85713 1.90388 1.60058 1.42599 1.39703 1.22240 0.95175 1.03300 0.99862 1.21455 1.02457 0.99413 0.91201 1.21446 0.96909 1.00641 0.93647 0.88661 1.20355 0.81917 0.81116 0.86379 1.90569 1.55789 1.38910 1.55806 1.46287 1.12284 1.51714 1.27159 1.21650 0.96293 0.97757 0.84976 1.21885 0.91644 1.00707 1.01638 1.19025 0.95750 0.96009 0.90582 1.21199 0.96588 1.30266 1.08093 0.92660 1.25031 0.98315 0.95081 0.96025 1.69963 1.36819 1.33722 1.12759 0.86584 0.84948 0.78150 0.78251 1.20643 1.21187 1.19891 1.20236 0.92063 0.96804 0.93804 1.22020 1.01856 0.99234 0.97528 1.22450 1.00417 0.95291 1.04374 0.91672 0.91663 0.92256 0.88931 0.88123 0.89903 0.90106 0.76870 0.91746 0.91766 0.92755 0.92761 0.96309 0.96303 0.92894 0.92117 0.90627 0.92897 0.93539 0.87749 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.86 37.15 0.29 -0.87 16 2 C -0.13 -1.05 2.26 -91.38 -0.21 -1.26 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.37 3.36 5.62 -28.48 -0.16 3.20 16 5 O -0.45 -5.65 16.86 6.00 0.10 -5.55 16 6 C -0.17 -1.16 6.14 -27.71 -0.17 -1.33 16 7 C -0.11 -0.83 4.92 -26.86 -0.13 -0.97 16 8 C -0.10 -0.91 1.77 -91.81 -0.16 -1.07 16 9 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 10 C 0.52 6.39 6.08 -10.99 -0.07 6.32 16 11 O -0.53 -8.40 12.00 5.56 0.07 -8.33 16 12 N -0.72 -9.01 5.56 -60.29 -0.33 -9.34 16 13 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 14 C -0.12 -2.23 5.27 -26.73 -0.14 -2.38 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 C -0.03 -0.26 0.29 -154.41 -0.04 -0.30 16 25 C -0.15 -1.40 7.89 37.15 0.29 -1.10 16 26 C -0.17 -1.81 7.09 37.16 0.26 -1.54 16 27 H 0.06 0.60 6.30 -51.93 -0.33 0.27 16 28 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 29 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.74 6.20 -51.93 -0.32 0.42 16 34 H 0.40 3.86 8.47 -40.82 -0.35 3.52 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.06 0.52 6.73 -51.93 -0.35 0.17 16 43 H 0.07 0.91 6.05 -51.93 -0.31 0.59 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.49 5.61 -51.93 -0.29 0.20 16 46 H 0.10 1.37 5.15 -51.93 -0.27 1.11 16 47 H 0.05 0.55 6.34 -51.93 -0.33 0.23 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -32.02 358.30 -7.79 -39.80 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.93 Total: -0.26 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.81 Total: -12.11 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.40 Total: -35.08 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.17 Total: -13.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.02 -7.79 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352419990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.872 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds