Wall clock time and date at job start Tue Mar 31 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20756 * 119.99472 * 2 1 4 4 C 1.50693 * 120.00034 * 180.02562 * 2 1 3 5 5 H 1.08998 * 112.90793 * 348.79009 * 4 2 1 6 6 C 1.54050 * 113.61180 * 120.16165 * 4 2 1 7 7 C 1.53776 * 87.07625 * 89.07412 * 6 4 2 8 8 H 1.09004 * 113.61137 * 270.87979 * 7 6 4 9 9 C 1.53009 * 113.69283 * 139.98991 * 7 6 4 10 10 C 1.50701 * 109.46789 * 87.46129 * 9 7 6 11 11 O 1.21272 * 120.00256 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99170 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99320 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46631 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47022 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47323 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99826 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00091 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00136 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47040 * 59.99601 * 20 18 16 22 22 H 1.48499 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46732 * 300.00051 * 20 18 16 24 24 C 1.53782 * 87.08595 * 25.42795 * 7 6 4 25 25 C 1.52995 * 113.61464 * 89.11779 * 24 7 6 26 26 C 1.53000 * 113.61572 * 219.94090 * 24 7 6 27 27 H 1.09002 * 109.47376 * 269.99866 * 1 2 3 28 28 H 1.08994 * 109.46994 * 30.00472 * 1 2 3 29 29 H 1.09003 * 109.46867 * 150.00072 * 1 2 3 30 30 H 1.08998 * 113.61999 * 334.52222 * 6 4 2 31 31 H 1.09006 * 113.68855 * 203.62835 * 6 4 2 32 32 H 1.08995 * 109.46904 * 207.46290 * 9 7 6 33 33 H 1.08993 * 109.46646 * 327.45759 * 9 7 6 34 34 H 0.96999 * 120.00781 * 359.97438 * 12 10 9 35 35 H 1.08992 * 109.47023 * 299.99770 * 13 12 10 36 36 H 1.08993 * 109.47191 * 60.00016 * 13 12 10 37 37 H 1.08995 * 109.47103 * 300.00149 * 14 13 12 38 38 H 1.09002 * 109.47190 * 60.00212 * 14 13 12 39 39 H 1.09001 * 109.46841 * 300.00423 * 15 14 13 40 40 H 1.09002 * 109.46826 * 60.00159 * 15 14 13 41 41 H 0.96999 * 119.99727 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.47496 * 181.53698 * 25 24 7 43 43 H 1.09002 * 109.47237 * 61.52624 * 25 24 7 44 44 H 1.09003 * 109.47225 * 301.53294 * 25 24 7 45 45 H 1.09002 * 109.46345 * 281.00737 * 26 24 7 46 46 H 1.08997 * 109.47244 * 41.00142 * 26 24 7 47 47 H 1.09000 * 109.47158 * 161.00957 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 1 1.6198 -2.1650 0.1942 6 6 3.1833 -1.4842 -1.2211 7 6 4.2790 -0.7894 -0.3957 8 1 4.2848 0.2953 -0.5031 9 6 5.6664 -1.4111 -0.5688 10 6 6.3567 -0.7781 -1.7494 11 8 5.7947 0.0855 -2.3890 12 7 7.5987 -1.1718 -2.0943 13 6 8.2696 -0.5568 -3.2424 14 6 9.6569 -1.1784 -3.4153 15 6 10.3574 -0.5367 -4.6147 16 6 11.7236 -1.1493 -4.7854 17 1 12.0586 -1.9196 -4.1066 18 6 12.5458 -0.7263 -5.8081 19 7 12.1380 0.2121 -6.6344 20 14 14.2391 -1.4862 -6.0202 21 1 14.1009 -2.9465 -6.2515 22 1 14.9195 -0.8624 -7.1835 23 1 15.0433 -1.2533 -4.7937 24 6 3.5361 -1.2803 0.8581 25 6 3.9826 -2.6646 1.3325 26 6 3.4941 -0.2499 1.9883 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.8673 -0.9144 -2.0949 31 1 3.4056 -2.5259 -1.4528 32 1 6.2561 -1.2398 0.3317 33 1 5.5655 -2.4830 -0.7385 34 1 8.0484 -1.8622 -1.5824 35 1 7.6795 -0.7282 -4.1426 36 1 8.3707 0.5151 -3.0728 37 1 10.2468 -1.0067 -2.5149 38 1 9.5562 -2.2504 -3.5847 39 1 9.7673 -0.7088 -5.5148 40 1 10.4581 0.5355 -4.4457 41 1 12.7164 0.5094 -7.3541 42 1 3.3968 -2.9565 2.2040 43 1 5.0393 -2.6342 1.5984 44 1 3.8300 -3.3894 0.5328 45 1 4.4494 -0.2474 2.5133 46 1 3.3062 0.7395 1.5713 47 1 2.6970 -0.5077 2.6856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353688959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:43 Heat of formation + Delta-G solvation = -85.164112 kcal Electronic energy + Delta-G solvation = -23639.082967 eV Core-core repulsion = 20207.611056 eV Total energy + Delta-G solvation = -3431.471911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46562 -39.33345 -37.94892 -35.33725 -33.28143 -31.72670 -31.39517 -30.92786 -29.76900 -27.74302 -26.73011 -24.65405 -23.11908 -22.45107 -20.71945 -20.44312 -19.65857 -18.16154 -16.86114 -16.45730 -16.13701 -15.87823 -15.42857 -15.24713 -15.18629 -14.52377 -14.46260 -14.37422 -13.98814 -13.61380 -13.35723 -13.12648 -12.67705 -12.60792 -12.44746 -12.30824 -12.26234 -12.21146 -11.82919 -11.65190 -11.55927 -11.22746 -11.08589 -10.87596 -10.71066 -10.62202 -10.30480 -10.23223 -9.84754 -9.77594 -9.61274 -9.30478 -9.10289 -8.70505 -8.36325 -6.00916 -4.04210 1.66296 2.89094 3.32319 3.36985 3.38529 3.46778 3.66909 4.09882 4.25144 4.44715 4.50490 4.58623 4.77150 4.88490 4.96882 5.05541 5.07031 5.13711 5.24175 5.32074 5.33377 5.34550 5.43072 5.48429 5.54816 5.59158 5.65908 5.71296 5.76290 5.78479 5.80876 5.84516 6.09355 6.16429 6.19519 6.39281 6.55494 6.62402 6.87201 7.02879 7.30876 7.64251 7.77377 7.79580 7.97823 8.38549 8.50401 9.02312 9.59805 11.10339 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.036247 B = 0.002235 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.292926 B =12527.593876 C =12922.783012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.369 3.631 3 O -0.443 6.443 4 C -0.164 4.164 5 H 0.097 0.903 6 C -0.111 4.111 7 C -0.083 4.083 8 H 0.113 0.887 9 C -0.132 4.132 10 C 0.505 3.495 11 O -0.542 6.542 12 N -0.730 5.730 13 C 0.116 3.884 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.064 4.064 25 C -0.130 4.130 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.056 -7.070 18.462 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.244 3.756 3 O -0.316 6.316 4 C -0.183 4.183 5 H 0.116 0.884 6 C -0.149 4.149 7 C -0.101 4.101 8 H 0.131 0.869 9 C -0.172 4.172 10 C 0.291 3.709 11 O -0.419 6.419 12 N -0.381 5.381 13 C -0.007 4.007 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.064 4.064 25 C -0.187 4.187 26 C -0.210 4.210 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.078 -5.766 17.821 29.722 hybrid contribution 1.128 -0.899 0.020 1.442 sum -21.950 -6.665 17.840 29.060 Atomic orbital electron populations 1.22285 0.94389 1.04780 1.04412 1.24099 0.91572 0.89429 0.70475 1.90382 1.71714 1.34916 1.34597 1.23122 0.96967 0.97877 1.00349 0.88431 1.22860 0.95024 1.01306 0.95669 1.22572 0.91324 1.02001 0.94230 0.86882 1.21714 0.97074 1.01125 0.97307 1.20683 0.81541 0.82912 0.85787 1.90700 1.65165 1.31796 1.54217 1.46258 1.16654 1.42039 1.33128 1.21612 0.94087 0.97656 0.87306 1.21879 0.92593 0.99814 1.01533 1.19028 0.94736 0.96098 0.91541 1.21167 1.00329 1.21295 1.13325 0.92709 1.25039 0.98464 0.95119 0.95893 1.69960 1.37051 1.29101 1.17165 0.86633 0.84223 0.79405 0.77579 1.20249 1.21272 1.20249 1.21749 0.93933 0.96386 0.94319 1.21642 1.01683 0.94331 1.01079 1.21983 1.01655 0.99992 0.97368 0.88784 0.89717 0.89724 0.90831 0.89282 0.88928 0.88997 0.76957 0.91933 0.91921 0.92785 0.92801 0.96312 0.96295 0.92868 0.92345 0.91615 0.92107 0.92324 0.90397 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 10.24 36.01 0.37 -0.74 16 2 C 0.37 3.28 5.87 -29.03 -0.17 3.11 16 3 O -0.44 -5.66 13.68 6.00 0.08 -5.58 16 4 C -0.16 -1.25 3.78 -90.82 -0.34 -1.59 16 5 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 6 C -0.11 -1.05 6.87 -25.78 -0.18 -1.23 16 7 C -0.08 -0.89 2.21 -89.80 -0.20 -1.09 16 8 H 0.11 1.63 6.46 -51.93 -0.34 1.29 16 9 C -0.13 -1.33 4.33 -27.88 -0.12 -1.45 16 10 C 0.50 7.46 7.83 -10.98 -0.09 7.38 16 11 O -0.54 -10.41 15.76 5.56 0.09 -10.32 16 12 N -0.73 -10.53 5.56 -60.29 -0.33 -10.86 16 13 C 0.12 2.10 5.68 -4.04 -0.02 2.08 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.06 -0.51 1.24 -153.70 -0.19 -0.70 16 25 C -0.13 -0.78 7.94 37.16 0.30 -0.49 16 26 C -0.15 -1.32 8.42 37.16 0.31 -1.01 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.70 7.40 -51.93 -0.38 0.31 16 32 H 0.09 0.78 7.87 -51.93 -0.41 0.38 16 33 H 0.09 0.72 7.30 -51.93 -0.38 0.34 16 34 H 0.40 4.51 8.47 -40.82 -0.35 4.16 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.38 7.31 -51.93 -0.38 0.00 16 44 H 0.06 0.33 7.25 -51.93 -0.38 -0.05 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.85 5.46 -51.93 -0.28 0.57 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -34.27 375.80 -8.16 -42.43 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.35 Total: -0.29 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.02 Total: -11.30 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.40 Total: -37.19 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.17 Total: -15.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.27 -8.16 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353688959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.734 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds