Wall clock time and date at job start Tue Mar 31 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20756 * 119.99472 * 2 1 4 4 C 1.50693 * 120.00034 * 180.02562 * 2 1 3 5 5 H 1.08998 * 112.90793 * 348.79009 * 4 2 1 6 6 C 1.54050 * 113.61180 * 120.16165 * 4 2 1 7 7 C 1.53776 * 87.07625 * 89.07412 * 6 4 2 8 8 H 1.09004 * 113.61137 * 270.87979 * 7 6 4 9 9 C 1.53009 * 113.69283 * 139.98991 * 7 6 4 10 10 C 1.50701 * 109.46789 * 87.46129 * 9 7 6 11 11 O 1.21272 * 120.00256 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99170 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99320 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46631 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47022 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47323 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99826 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00091 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00136 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47040 * 59.99601 * 20 18 16 22 22 H 1.48499 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46732 * 300.00051 * 20 18 16 24 24 C 1.53782 * 87.08595 * 25.42795 * 7 6 4 25 25 C 1.52995 * 113.61464 * 89.11779 * 24 7 6 26 26 C 1.53000 * 113.61572 * 219.94090 * 24 7 6 27 27 H 1.09002 * 109.47376 * 269.99866 * 1 2 3 28 28 H 1.08994 * 109.46994 * 30.00472 * 1 2 3 29 29 H 1.09003 * 109.46867 * 150.00072 * 1 2 3 30 30 H 1.08998 * 113.61999 * 334.52222 * 6 4 2 31 31 H 1.09006 * 113.68855 * 203.62835 * 6 4 2 32 32 H 1.08995 * 109.46904 * 207.46290 * 9 7 6 33 33 H 1.08993 * 109.46646 * 327.45759 * 9 7 6 34 34 H 0.96999 * 120.00781 * 359.97438 * 12 10 9 35 35 H 1.08992 * 109.47023 * 299.99770 * 13 12 10 36 36 H 1.08993 * 109.47191 * 60.00016 * 13 12 10 37 37 H 1.08995 * 109.47103 * 300.00149 * 14 13 12 38 38 H 1.09002 * 109.47190 * 60.00212 * 14 13 12 39 39 H 1.09001 * 109.46841 * 300.00423 * 15 14 13 40 40 H 1.09002 * 109.46826 * 60.00159 * 15 14 13 41 41 H 0.96999 * 119.99727 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.47496 * 181.53698 * 25 24 7 43 43 H 1.09002 * 109.47237 * 61.52624 * 25 24 7 44 44 H 1.09003 * 109.47225 * 301.53294 * 25 24 7 45 45 H 1.09002 * 109.46345 * 281.00737 * 26 24 7 46 46 H 1.08997 * 109.47244 * 41.00142 * 26 24 7 47 47 H 1.09000 * 109.47158 * 161.00957 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 1 1.6198 -2.1650 0.1942 6 6 3.1833 -1.4842 -1.2211 7 6 4.2790 -0.7894 -0.3957 8 1 4.2848 0.2953 -0.5031 9 6 5.6664 -1.4111 -0.5688 10 6 6.3567 -0.7781 -1.7494 11 8 5.7947 0.0855 -2.3890 12 7 7.5987 -1.1718 -2.0943 13 6 8.2696 -0.5568 -3.2424 14 6 9.6569 -1.1784 -3.4153 15 6 10.3574 -0.5367 -4.6147 16 6 11.7236 -1.1493 -4.7854 17 1 12.0586 -1.9196 -4.1066 18 6 12.5458 -0.7263 -5.8081 19 7 12.1380 0.2121 -6.6344 20 14 14.2391 -1.4862 -6.0202 21 1 14.1009 -2.9465 -6.2515 22 1 14.9195 -0.8624 -7.1835 23 1 15.0433 -1.2533 -4.7937 24 6 3.5361 -1.2803 0.8581 25 6 3.9826 -2.6646 1.3325 26 6 3.4941 -0.2499 1.9883 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.8673 -0.9144 -2.0949 31 1 3.4056 -2.5259 -1.4528 32 1 6.2561 -1.2398 0.3317 33 1 5.5655 -2.4830 -0.7385 34 1 8.0484 -1.8622 -1.5824 35 1 7.6795 -0.7282 -4.1426 36 1 8.3707 0.5151 -3.0728 37 1 10.2468 -1.0067 -2.5149 38 1 9.5562 -2.2504 -3.5847 39 1 9.7673 -0.7088 -5.5148 40 1 10.4581 0.5355 -4.4457 41 1 12.7164 0.5094 -7.3541 42 1 3.3968 -2.9565 2.2040 43 1 5.0393 -2.6342 1.5984 44 1 3.8300 -3.3894 0.5328 45 1 4.4494 -0.2474 2.5133 46 1 3.3062 0.7395 1.5713 47 1 2.6970 -0.5077 2.6856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353688959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:43 Heat of formation + Delta-G solvation = -107.124051 kcal Electronic energy + Delta-G solvation = -23640.035221 eV Core-core repulsion = 20207.611056 eV Total energy + Delta-G solvation = -3432.424165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19253 -40.52816 -38.76542 -36.93750 -35.18077 -33.21546 -32.09426 -31.96931 -30.52015 -28.53582 -28.22694 -25.74179 -24.55030 -23.37752 -22.31868 -21.44649 -20.73166 -18.87702 -18.56924 -17.89622 -17.12161 -16.86312 -16.57762 -16.41748 -16.28119 -15.90971 -15.68540 -15.35634 -14.82420 -14.55918 -14.35595 -14.06505 -13.92356 -13.77440 -13.62304 -13.20724 -13.07138 -12.98096 -12.91141 -12.82489 -12.69875 -12.56352 -12.42371 -12.29451 -11.95186 -11.78343 -11.68271 -11.59159 -11.26833 -11.06088 -10.91362 -10.66034 -10.56139 -10.28842 -10.06941 -8.20299 -6.32463 0.99224 1.40984 1.44542 1.52403 1.70777 2.26686 2.42725 3.08824 3.13101 3.42148 3.56074 3.80027 3.90068 3.98884 4.18377 4.19039 4.26323 4.33269 4.48619 4.53366 4.57951 4.61751 4.62557 4.65020 4.71155 4.82388 4.84832 4.91466 4.92667 5.00666 5.03548 5.07179 5.14222 5.15280 5.22438 5.30620 5.38683 5.45794 5.49195 5.53269 5.68398 5.71148 5.82440 6.20543 6.64714 6.66999 6.85101 7.34331 7.37388 8.91733 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.036247 B = 0.002235 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.292926 B =12527.593876 C =12922.783012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.361 3.639 3 O -0.494 6.494 4 C -0.158 4.158 5 H 0.134 0.866 6 C -0.113 4.113 7 C -0.096 4.096 8 H 0.065 0.935 9 C -0.119 4.119 10 C 0.500 3.500 11 O -0.594 6.594 12 N -0.717 5.717 13 C 0.129 3.871 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.052 4.052 25 C -0.129 4.129 26 C -0.153 4.153 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.417 0.583 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.070 0.930 39 H -0.010 1.010 40 H -0.011 1.011 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.171 -10.756 20.778 32.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.240 3.760 3 O -0.370 6.370 4 C -0.177 4.177 5 H 0.152 0.848 6 C -0.151 4.151 7 C -0.115 4.115 8 H 0.083 0.917 9 C -0.158 4.158 10 C 0.288 3.712 11 O -0.475 6.475 12 N -0.370 5.370 13 C 0.005 3.995 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.579 4.579 17 H 0.087 0.913 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.052 4.052 25 C -0.185 4.185 26 C -0.210 4.210 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.009 0.991 40 H 0.007 0.993 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.199 -9.503 20.180 32.183 hybrid contribution 1.112 0.327 -0.723 1.366 sum -22.087 -9.176 19.457 30.833 Atomic orbital electron populations 1.22316 0.91681 1.05571 1.05883 1.24842 0.93322 0.89294 0.68561 1.90389 1.72964 1.36694 1.36973 1.23165 0.97244 0.98309 0.98951 0.84774 1.22906 0.95214 1.01902 0.95034 1.22502 0.92470 0.99561 0.96972 0.91660 1.21771 0.96200 1.02381 0.95479 1.21629 0.81102 0.82049 0.86380 1.90691 1.66346 1.34211 1.56209 1.46044 1.16670 1.42195 1.32073 1.21172 0.93432 0.96649 0.88284 1.21583 0.92793 1.00101 0.99286 1.18953 0.94723 0.94792 0.93050 1.21652 1.01188 1.21527 1.13565 0.91348 1.26079 1.03189 0.95542 0.95537 1.70119 1.38851 1.30767 1.17931 0.85427 0.78552 0.78850 0.77774 1.18834 1.21226 1.18970 1.21740 0.93224 0.97464 0.92762 1.21680 1.02301 0.92477 1.02078 1.21955 1.02412 0.98800 0.97840 0.86752 0.90655 0.87199 0.93947 0.86780 0.86667 0.85418 0.74623 0.93646 0.94030 0.91347 0.91102 0.99121 0.99296 0.92812 0.90899 0.90977 0.90757 0.91940 0.93452 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 10.24 71.24 0.73 -1.16 16 2 C 0.36 6.40 5.87 29.10 0.17 6.57 16 3 O -0.49 -13.68 13.68 -1.44 -0.02 -13.70 16 4 C -0.16 -2.10 3.78 -10.92 -0.04 -2.14 16 5 H 0.13 0.82 8.09 -2.39 -0.02 0.80 16 6 C -0.11 -2.04 6.87 31.21 0.21 -1.82 16 7 C -0.10 -2.03 2.21 -10.27 -0.02 -2.06 16 8 H 0.06 2.05 6.46 -2.39 -0.02 2.03 16 9 C -0.12 -2.15 4.33 29.85 0.13 -2.02 16 10 C 0.50 14.69 7.83 87.66 0.69 15.37 16 11 O -0.59 -24.06 15.76 -3.01 -0.05 -24.11 16 12 N -0.72 -19.97 5.56 -463.06 -2.57 -22.54 16 13 C 0.13 4.77 5.68 86.38 0.49 5.26 16 14 C -0.10 -3.92 5.27 30.60 0.16 -3.75 16 15 C 0.02 1.20 4.97 29.85 0.15 1.35 16 16 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 19 N -0.94 -58.08 13.29 21.45 0.28 -57.80 16 20 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 C -0.05 -0.72 1.24 -51.66 -0.06 -0.79 16 25 C -0.13 -0.96 7.94 71.98 0.57 -0.39 16 26 C -0.15 -2.51 8.42 71.98 0.61 -1.90 16 27 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.50 8.12 -2.39 -0.02 0.48 16 30 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.11 1.44 7.40 -2.38 -0.02 1.43 16 32 H 0.12 1.60 7.87 -2.39 -0.02 1.58 16 33 H 0.13 1.44 7.30 -2.39 -0.02 1.43 16 34 H 0.42 8.31 8.47 -92.71 -0.79 7.52 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.48 7.31 -2.39 -0.02 0.47 16 44 H 0.07 0.40 7.25 -2.39 -0.02 0.38 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.05 1.10 5.46 -2.39 -0.01 1.08 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -80.38 375.80 4.30 -76.08 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.15 Total: 13.66 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.48 Total: -17.67 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.29 Total: -80.34 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.07 Total: -37.81 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -80.38 4.30 -76.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353688959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.049 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds