Wall clock time and date at job start Tue Mar 31 2020 07:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20766 * 120.00508 * 2 1 4 4 C 1.50698 * 120.00030 * 179.97438 * 2 1 3 5 5 H 1.08996 * 112.85135 * 26.69790 * 4 2 1 6 6 C 1.53787 * 113.61778 * 255.49879 * 4 2 1 7 7 C 1.53777 * 87.08276 * 219.93632 * 6 4 2 8 8 H 1.09000 * 113.61390 * 270.80177 * 7 6 4 9 9 C 1.52997 * 113.61708 * 139.98051 * 7 6 4 10 10 C 1.50698 * 109.47342 * 85.86308 * 9 7 6 11 11 O 1.21286 * 119.99758 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00019 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.53785 * 87.17373 * 25.38739 * 7 6 4 25 25 C 1.53004 * 113.61263 * 89.16244 * 24 7 6 26 26 C 1.52998 * 113.61595 * 220.06092 * 24 7 6 27 27 H 1.08991 * 109.47270 * 240.00159 * 1 2 3 28 28 H 1.09004 * 109.46996 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46763 * 120.00055 * 1 2 3 30 30 H 1.08998 * 113.61157 * 105.38399 * 6 4 2 31 31 H 1.09003 * 113.61163 * 334.48366 * 6 4 2 32 32 H 1.09002 * 109.47045 * 325.86113 * 9 7 6 33 33 H 1.09001 * 109.46922 * 205.86321 * 9 7 6 34 34 H 0.96992 * 120.00518 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47280 * 59.99618 * 13 12 10 36 36 H 1.09001 * 109.46702 * 299.99811 * 13 12 10 37 37 H 1.09002 * 109.47103 * 59.99596 * 14 13 12 38 38 H 1.08998 * 109.46862 * 300.00408 * 14 13 12 39 39 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 40 40 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.47148 * 59.99820 * 25 24 7 43 43 H 1.08999 * 109.47080 * 180.02562 * 25 24 7 44 44 H 1.09000 * 109.47006 * 299.99721 * 25 24 7 45 45 H 1.08996 * 109.47287 * 59.99967 * 26 24 7 46 46 H 1.09001 * 109.47515 * 180.02562 * 26 24 7 47 47 H 1.09002 * 109.47495 * 300.00257 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6950 -2.1205 -0.4503 6 6 2.8741 -1.6616 1.3649 7 6 4.1066 -2.1600 0.5921 8 1 4.0464 -3.2096 0.3041 9 6 5.4353 -1.8028 1.2612 10 6 5.7831 -2.8560 2.2815 11 8 5.0415 -3.7997 2.4559 12 7 6.9183 -2.7492 3.0001 13 6 7.2567 -3.7733 3.9915 14 6 8.5853 -3.4162 4.6608 15 6 8.9383 -4.4853 5.6966 16 6 10.2474 -4.1338 6.3553 17 1 10.7746 -3.2372 6.0646 18 6 10.7714 -4.9563 7.3300 19 7 10.1292 -6.0478 7.6844 20 14 12.3937 -4.5201 8.1470 21 1 12.1349 -3.6809 9.3444 22 1 13.0922 -5.7650 8.5565 23 1 13.2436 -3.7677 7.1896 24 6 3.7012 -1.1893 -0.5296 25 6 4.3004 0.2100 -0.3755 26 6 3.8865 -1.7649 -1.9350 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3393 -2.4524 1.8909 31 1 3.0744 -0.7941 1.9937 32 1 5.3452 -0.8349 1.7544 33 1 6.2206 -1.7545 0.5068 34 1 7.5116 -1.9947 2.8604 35 1 7.3474 -4.7410 3.4980 36 1 6.4712 -3.8224 4.7457 37 1 8.4949 -2.4485 5.1543 38 1 9.3705 -3.3673 3.9063 39 1 9.0286 -5.4532 5.2035 40 1 8.1530 -4.5337 6.4510 41 1 10.4981 -6.6266 8.3698 42 1 5.3882 0.1421 -0.3815 43 1 3.9707 0.8395 -1.2020 44 1 3.9688 0.6455 0.5671 45 1 3.2759 -2.6612 -2.0440 46 1 3.5808 -1.0245 -2.6743 47 1 4.9354 -2.0192 -2.0882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353688961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:46 Heat of formation + Delta-G solvation = -83.425839 kcal Electronic energy + Delta-G solvation = -23535.721749 eV Core-core repulsion = 20104.325216 eV Total energy + Delta-G solvation = -3431.396534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39366 -39.40034 -38.06300 -35.36654 -33.30408 -31.75902 -31.53278 -30.88184 -29.69717 -27.61476 -26.78706 -24.86012 -23.11061 -22.54124 -20.73767 -20.25951 -19.43480 -18.46396 -16.89486 -16.53240 -16.32316 -15.67758 -15.51095 -15.43327 -15.13334 -14.72750 -14.44760 -14.19807 -13.93985 -13.59124 -13.29685 -12.98345 -12.81826 -12.61073 -12.47205 -12.32357 -12.28598 -11.98442 -11.83387 -11.72004 -11.63878 -11.16958 -11.13400 -10.90568 -10.73101 -10.67420 -10.58525 -10.22523 -9.86743 -9.81068 -9.37158 -9.29729 -9.10804 -8.74275 -8.37803 -6.02378 -4.05464 1.63451 2.84135 3.30406 3.36575 3.38771 3.42853 3.76021 4.05411 4.23223 4.43704 4.45124 4.51431 4.76219 4.91010 4.95421 5.04038 5.06709 5.12252 5.19506 5.33271 5.33424 5.37978 5.45039 5.52706 5.55224 5.63915 5.70696 5.74940 5.75419 5.78773 5.83116 5.85369 6.08803 6.15969 6.17451 6.34853 6.51837 6.60239 6.84688 7.00844 7.26044 7.62967 7.75602 7.75611 7.96415 8.37100 8.45227 9.01225 9.58701 11.08906 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035418 B = 0.002155 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.373412 B =12991.887889 C =13047.943440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.364 3.636 3 O -0.451 6.451 4 C -0.163 4.163 5 H 0.112 0.888 6 C -0.110 4.110 7 C -0.080 4.080 8 H 0.104 0.896 9 C -0.132 4.132 10 C 0.506 3.494 11 O -0.545 6.545 12 N -0.729 5.729 13 C 0.116 3.884 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.066 4.066 25 C -0.121 4.121 26 C -0.138 4.138 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 11.858 -19.401 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.240 3.760 3 O -0.325 6.325 4 C -0.182 4.182 5 H 0.130 0.870 6 C -0.147 4.147 7 C -0.098 4.098 8 H 0.122 0.878 9 C -0.172 4.172 10 C 0.292 3.708 11 O -0.423 6.423 12 N -0.380 5.380 13 C -0.006 4.006 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.066 4.066 25 C -0.178 4.178 26 C -0.195 4.195 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.780 11.570 -19.144 28.575 hybrid contribution 1.071 0.340 0.487 1.225 sum -16.709 11.910 -18.657 27.733 Atomic orbital electron populations 1.22369 0.94897 1.04689 1.04435 1.24441 0.91621 0.90038 0.69885 1.90421 1.71320 1.35233 1.35490 1.23346 0.96609 0.97630 1.00638 0.86954 1.22837 0.96707 1.01321 0.93881 1.22379 0.92532 0.99969 0.94956 0.87788 1.21687 0.99044 0.98622 0.97832 1.20677 0.81038 0.87108 0.81938 1.90681 1.49971 1.33794 1.67875 1.46260 1.23486 1.27803 1.40409 1.21618 0.98340 0.90569 0.90116 1.21882 0.93364 1.01418 0.99216 1.19031 0.96579 0.93082 0.92721 1.21207 1.06085 1.08290 1.20470 0.92649 1.25038 0.97551 0.95047 0.96897 1.69967 1.38922 1.13241 1.31147 0.86574 0.83749 0.77816 0.79729 1.20655 1.21204 1.19899 1.21914 0.93159 0.96701 0.94871 1.21760 0.99073 0.93503 1.03453 1.21768 1.02186 1.00436 0.95110 0.88953 0.90270 0.89161 0.90116 0.89868 0.88812 0.88804 0.76872 0.91899 0.91903 0.92774 0.92762 0.96294 0.96307 0.92929 0.93194 0.92354 0.90981 0.92385 0.92698 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.06 10.26 36.00 0.37 -0.69 16 2 C 0.36 2.88 6.67 -29.04 -0.19 2.69 16 3 O -0.45 -4.90 13.22 5.99 0.08 -4.82 16 4 C -0.16 -1.21 3.58 -90.87 -0.33 -1.53 16 5 H 0.11 0.65 7.96 -51.93 -0.41 0.24 16 6 C -0.11 -0.99 6.83 -25.92 -0.18 -1.17 16 7 C -0.08 -0.75 2.62 -89.81 -0.24 -0.99 16 8 H 0.10 1.12 7.69 -51.93 -0.40 0.72 16 9 C -0.13 -1.29 4.29 -27.89 -0.12 -1.41 16 10 C 0.51 7.10 7.83 -10.99 -0.09 7.01 16 11 O -0.55 -9.72 15.79 5.55 0.09 -9.63 16 12 N -0.73 -10.23 5.56 -60.29 -0.33 -10.56 16 13 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 14 C -0.12 -2.37 5.27 -26.74 -0.14 -2.51 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.07 -0.54 1.23 -153.60 -0.19 -0.72 16 25 C -0.12 -1.06 6.22 37.16 0.23 -0.83 16 26 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.78 7.39 -51.93 -0.38 0.40 16 32 H 0.09 0.81 7.28 -51.93 -0.38 0.43 16 33 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 34 H 0.40 4.47 8.47 -40.82 -0.35 4.12 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.05 0.39 7.27 -51.93 -0.38 0.02 16 43 H 0.06 0.55 7.46 -51.93 -0.39 0.17 16 44 H 0.07 0.72 5.69 -51.93 -0.30 0.42 16 45 H 0.06 0.38 7.95 -51.93 -0.41 -0.04 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -33.13 376.73 -8.29 -41.42 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.42 Total: -0.73 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.10 Total: -11.73 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.40 Total: -36.69 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.17 Total: -14.45 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.13 -8.29 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353688961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.004 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds