Wall clock time and date at job start Tue Mar 31 2020 07:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20766 * 120.00508 * 2 1 4 4 C 1.50698 * 120.00030 * 179.97438 * 2 1 3 5 5 H 1.08996 * 112.85135 * 26.69790 * 4 2 1 6 6 C 1.53787 * 113.61778 * 255.49879 * 4 2 1 7 7 C 1.53777 * 87.08276 * 219.93632 * 6 4 2 8 8 H 1.09000 * 113.61390 * 270.80177 * 7 6 4 9 9 C 1.52997 * 113.61708 * 139.98051 * 7 6 4 10 10 C 1.50698 * 109.47342 * 85.86308 * 9 7 6 11 11 O 1.21286 * 119.99758 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00019 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.53785 * 87.17373 * 25.38739 * 7 6 4 25 25 C 1.53004 * 113.61263 * 89.16244 * 24 7 6 26 26 C 1.52998 * 113.61595 * 220.06092 * 24 7 6 27 27 H 1.08991 * 109.47270 * 240.00159 * 1 2 3 28 28 H 1.09004 * 109.46996 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46763 * 120.00055 * 1 2 3 30 30 H 1.08998 * 113.61157 * 105.38399 * 6 4 2 31 31 H 1.09003 * 113.61163 * 334.48366 * 6 4 2 32 32 H 1.09002 * 109.47045 * 325.86113 * 9 7 6 33 33 H 1.09001 * 109.46922 * 205.86321 * 9 7 6 34 34 H 0.96992 * 120.00518 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47280 * 59.99618 * 13 12 10 36 36 H 1.09001 * 109.46702 * 299.99811 * 13 12 10 37 37 H 1.09002 * 109.47103 * 59.99596 * 14 13 12 38 38 H 1.08998 * 109.46862 * 300.00408 * 14 13 12 39 39 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 40 40 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.47148 * 59.99820 * 25 24 7 43 43 H 1.08999 * 109.47080 * 180.02562 * 25 24 7 44 44 H 1.09000 * 109.47006 * 299.99721 * 25 24 7 45 45 H 1.08996 * 109.47287 * 59.99967 * 26 24 7 46 46 H 1.09001 * 109.47515 * 180.02562 * 26 24 7 47 47 H 1.09002 * 109.47495 * 300.00257 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6950 -2.1205 -0.4503 6 6 2.8741 -1.6616 1.3649 7 6 4.1066 -2.1600 0.5921 8 1 4.0464 -3.2096 0.3041 9 6 5.4353 -1.8028 1.2612 10 6 5.7831 -2.8560 2.2815 11 8 5.0415 -3.7997 2.4559 12 7 6.9183 -2.7492 3.0001 13 6 7.2567 -3.7733 3.9915 14 6 8.5853 -3.4162 4.6608 15 6 8.9383 -4.4853 5.6966 16 6 10.2474 -4.1338 6.3553 17 1 10.7746 -3.2372 6.0646 18 6 10.7714 -4.9563 7.3300 19 7 10.1292 -6.0478 7.6844 20 14 12.3937 -4.5201 8.1470 21 1 12.1349 -3.6809 9.3444 22 1 13.0922 -5.7650 8.5565 23 1 13.2436 -3.7677 7.1896 24 6 3.7012 -1.1893 -0.5296 25 6 4.3004 0.2100 -0.3755 26 6 3.8865 -1.7649 -1.9350 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3393 -2.4524 1.8909 31 1 3.0744 -0.7941 1.9937 32 1 5.3452 -0.8349 1.7544 33 1 6.2206 -1.7545 0.5068 34 1 7.5116 -1.9947 2.8604 35 1 7.3474 -4.7410 3.4980 36 1 6.4712 -3.8224 4.7457 37 1 8.4949 -2.4485 5.1543 38 1 9.3705 -3.3673 3.9063 39 1 9.0286 -5.4532 5.2035 40 1 8.1530 -4.5337 6.4510 41 1 10.4981 -6.6266 8.3698 42 1 5.3882 0.1421 -0.3815 43 1 3.9707 0.8395 -1.2020 44 1 3.9688 0.6455 0.5671 45 1 3.2759 -2.6612 -2.0440 46 1 3.5808 -1.0245 -2.6743 47 1 4.9354 -2.0192 -2.0882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353688961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:46 Heat of formation + Delta-G solvation = -103.305320 kcal Electronic energy + Delta-G solvation = -23536.583788 eV Core-core repulsion = 20104.325216 eV Total energy + Delta-G solvation = -3432.258572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09642 -40.50883 -38.82596 -36.91450 -35.16831 -33.19999 -32.18625 -31.95752 -30.39916 -28.50522 -28.24169 -25.87986 -24.59939 -23.38986 -22.30144 -21.42024 -20.27385 -19.16821 -18.55933 -17.88597 -17.18670 -16.80294 -16.70524 -16.38930 -16.13603 -16.01152 -15.74024 -15.22644 -14.84919 -14.41094 -14.19770 -14.10985 -13.80945 -13.78614 -13.55077 -13.35980 -13.15556 -13.08848 -12.91550 -12.73858 -12.59320 -12.55416 -12.38165 -12.33656 -11.90106 -11.80478 -11.67729 -11.58822 -11.33808 -11.24320 -10.95516 -10.66472 -10.56269 -10.05388 -9.95600 -8.20269 -6.31845 1.02995 1.41248 1.42634 1.53640 1.71372 2.26910 2.42704 3.13328 3.18750 3.38859 3.52407 3.76697 3.85815 3.98410 4.19206 4.20903 4.29710 4.32605 4.39703 4.54524 4.55418 4.59087 4.62930 4.68988 4.70335 4.84770 4.86639 4.94005 4.95768 4.98549 5.02629 5.07444 5.16245 5.19151 5.21538 5.27237 5.37887 5.46767 5.50800 5.54177 5.67031 5.69795 5.83345 6.21505 6.64354 6.67273 6.85758 7.33109 7.37799 8.91825 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035418 B = 0.002155 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.373412 B =12991.887889 C =13047.943440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.364 3.636 3 O -0.485 6.485 4 C -0.157 4.157 5 H 0.132 0.868 6 C -0.113 4.113 7 C -0.083 4.083 8 H 0.091 0.909 9 C -0.122 4.122 10 C 0.505 3.495 11 O -0.587 6.587 12 N -0.720 5.720 13 C 0.130 3.870 14 C -0.102 4.102 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.061 4.061 25 C -0.117 4.117 26 C -0.137 4.137 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.415 0.585 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.067 0.933 39 H -0.008 1.008 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 13.386 -20.638 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.242 3.758 3 O -0.361 6.361 4 C -0.176 4.176 5 H 0.150 0.850 6 C -0.151 4.151 7 C -0.102 4.102 8 H 0.110 0.890 9 C -0.161 4.161 10 C 0.293 3.707 11 O -0.467 6.467 12 N -0.372 5.372 13 C 0.006 3.994 14 C -0.140 4.140 15 C -0.015 4.015 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.184 1.184 24 C -0.061 4.061 25 C -0.173 4.173 26 C -0.194 4.194 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.251 0.749 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.390 13.132 -20.405 29.854 hybrid contribution 0.899 -0.168 0.873 1.264 sum -16.491 12.964 -19.532 28.662 Atomic orbital electron populations 1.22379 0.92612 1.04998 1.06054 1.24834 0.92948 0.89508 0.68503 1.90419 1.72220 1.36247 1.37200 1.23381 0.96609 0.98152 0.99433 0.85005 1.22805 0.96933 1.00796 0.94557 1.22364 0.92465 0.99620 0.95706 0.89026 1.21720 0.99928 0.97424 0.97074 1.21435 0.80063 0.87285 0.81917 1.90668 1.51177 1.35747 1.69102 1.46074 1.24107 1.27484 1.39545 1.21178 0.96841 0.91029 0.90368 1.21591 0.94607 0.99725 0.98045 1.18950 0.95300 0.93843 0.93373 1.21682 1.06936 1.08618 1.20662 0.91551 1.26045 1.01633 0.94863 0.97703 1.70112 1.40963 1.14508 1.31935 0.85400 0.78871 0.77670 0.78816 1.19818 1.21010 1.18421 1.21858 0.93393 0.95856 0.95014 1.21692 0.99670 0.93583 1.02403 1.21763 1.02511 1.00760 0.94337 0.87647 0.90681 0.86995 0.90929 0.90471 0.87242 0.86459 0.74862 0.93441 0.93548 0.91485 0.91393 0.98993 0.99062 0.92802 0.92183 0.93183 0.92279 0.91679 0.92338 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 10.26 71.23 0.73 -0.95 16 2 C 0.36 5.29 6.67 29.10 0.19 5.48 16 3 O -0.48 -10.23 13.22 -1.47 -0.02 -10.25 16 4 C -0.16 -2.09 3.58 -10.95 -0.04 -2.13 16 5 H 0.13 1.23 7.96 -2.39 -0.02 1.21 16 6 C -0.11 -1.96 6.83 31.12 0.21 -1.74 16 7 C -0.08 -1.46 2.62 -10.27 -0.03 -1.49 16 8 H 0.09 1.89 7.69 -2.39 -0.02 1.87 16 9 C -0.12 -2.16 4.29 29.85 0.13 -2.03 16 10 C 0.50 13.70 7.83 87.66 0.69 14.38 16 11 O -0.59 -21.04 15.79 -3.05 -0.05 -21.09 16 12 N -0.72 -19.32 5.56 -463.06 -2.57 -21.90 16 13 C 0.13 4.61 5.67 86.38 0.49 5.10 16 14 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 15 C 0.02 1.21 4.97 29.85 0.15 1.35 16 16 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 C -0.06 -0.89 1.23 -51.59 -0.06 -0.95 16 25 C -0.12 -1.88 6.22 71.98 0.45 -1.43 16 26 C -0.14 -1.67 9.20 71.98 0.66 -1.00 16 27 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.71 8.12 -2.38 -0.02 0.69 16 29 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.42 7.39 -2.39 -0.02 1.40 16 32 H 0.11 1.65 7.28 -2.39 -0.02 1.63 16 33 H 0.12 1.57 7.92 -2.39 -0.02 1.55 16 34 H 0.41 8.34 8.47 -92.71 -0.79 7.55 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.06 0.81 7.27 -2.39 -0.02 0.80 16 43 H 0.05 0.90 7.46 -2.39 -0.02 0.88 16 44 H 0.06 1.12 5.69 -2.39 -0.01 1.11 16 45 H 0.06 0.70 7.95 -2.39 -0.02 0.68 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -72.95 376.73 4.25 -68.70 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.15 Total: 14.72 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 4.43 Total: -19.08 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.29 Total: -78.93 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.07 Total: -31.34 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.95 4.25 -68.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353688961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.601 kcal (2) G-P(sol) polarization free energy of solvation -72.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds