Wall clock time and date at job start Tue Mar 31 2020 07:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 119.99773 * 2 1 4 4 C 1.50698 * 120.00336 * 180.02562 * 2 1 3 5 5 H 1.08997 * 112.84684 * 335.52665 * 4 2 1 6 6 C 1.53781 * 113.61347 * 204.33513 * 4 2 1 7 7 C 1.53774 * 87.08376 * 270.88157 * 6 4 2 8 8 H 1.08997 * 113.61427 * 89.19921 * 7 6 4 9 9 C 1.52998 * 113.61666 * 220.02363 * 7 6 4 10 10 C 1.50706 * 109.46836 * 274.13176 * 9 7 6 11 11 O 1.21283 * 119.99688 * 0.02562 * 10 9 7 12 12 N 1.34771 * 119.99740 * 179.97438 * 10 9 7 13 13 C 1.46501 * 119.99679 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47157 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00426 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99903 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46880 * 60.00181 * 20 18 16 22 22 H 1.48497 * 109.46939 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47135 * 300.00395 * 20 18 16 24 24 C 1.53789 * 87.17213 * 334.61040 * 7 6 4 25 25 C 1.53001 * 113.61225 * 139.93549 * 24 7 6 26 26 C 1.52999 * 113.61542 * 270.84034 * 24 7 6 27 27 H 1.09004 * 109.47143 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47663 * 300.00003 * 1 2 3 29 29 H 1.08999 * 109.47318 * 60.00236 * 1 2 3 30 30 H 1.09001 * 113.61052 * 156.33341 * 6 4 2 31 31 H 1.09003 * 113.69238 * 25.44450 * 6 4 2 32 32 H 1.09005 * 109.47237 * 154.13465 * 9 7 6 33 33 H 1.08995 * 109.47375 * 34.13486 * 9 7 6 34 34 H 0.97003 * 120.00310 * 0.02562 * 12 10 9 35 35 H 1.09005 * 109.47162 * 60.00089 * 13 12 10 36 36 H 1.08995 * 109.47725 * 299.99961 * 13 12 10 37 37 H 1.08998 * 109.47006 * 299.99732 * 14 13 12 38 38 H 1.08995 * 109.47092 * 60.00047 * 14 13 12 39 39 H 1.09004 * 109.47208 * 300.00349 * 15 14 13 40 40 H 1.09005 * 109.47129 * 59.99977 * 15 14 13 41 41 H 0.96992 * 119.99863 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46931 * 66.45578 * 25 24 7 43 43 H 1.08998 * 109.46697 * 186.45315 * 25 24 7 44 44 H 1.08992 * 109.47545 * 306.45085 * 25 24 7 45 45 H 1.09004 * 109.46732 * 59.99822 * 26 24 7 46 46 H 1.08998 * 109.47319 * 179.97438 * 26 24 7 47 47 H 1.08996 * 109.47239 * 300.00328 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 1 1.6804 -2.1289 0.4152 6 6 3.6803 -1.1968 0.5801 7 6 4.1527 -0.8622 -0.8445 8 1 4.1264 0.2030 -1.0744 9 6 5.4833 -1.5181 -1.2190 10 6 6.6214 -0.6470 -0.7530 11 8 6.3908 0.3955 -0.1776 12 7 7.8953 -1.0269 -0.9747 13 6 9.0016 -0.1804 -0.5212 14 6 10.3323 -0.8362 -0.8958 15 6 11.4877 0.0475 -0.4216 16 6 12.7983 -0.5987 -0.7899 17 1 12.8064 -1.5453 -1.3098 18 6 13.9872 0.0185 -0.4632 19 7 13.9774 1.1710 0.1704 20 14 15.6118 -0.7829 -0.9191 21 1 15.6862 -0.9472 -2.3932 22 1 16.7332 0.0749 -0.4590 23 1 15.7074 -2.1138 -0.2672 24 6 2.9220 -1.6325 -1.3516 25 6 2.2352 -0.9709 -2.5481 26 6 3.1780 -3.1261 -1.5627 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.0704 -2.1415 0.9588 31 1 3.8036 -0.3748 1.2854 32 1 5.5373 -1.6383 -2.3010 33 1 5.5541 -2.4950 -0.7409 34 1 8.0796 -1.8609 -1.4346 35 1 8.9472 -0.0602 0.5608 36 1 8.9313 0.7966 -0.9993 37 1 10.4030 -1.8133 -0.4179 38 1 10.3864 -0.9561 -1.9777 39 1 11.4172 1.0249 -0.8990 40 1 11.4334 0.1670 0.6606 41 1 14.8137 1.6053 0.3999 42 1 2.8993 -1.0031 -3.4117 43 1 1.3133 -1.5049 -2.7786 44 1 2.0035 0.0663 -2.3063 45 1 3.4796 -3.5799 -0.6187 46 1 2.2660 -3.6040 -1.9203 47 1 3.9706 -3.2583 -2.2991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353688964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:52 Heat of formation + Delta-G solvation = -87.175871 kcal Electronic energy + Delta-G solvation = -23640.371472 eV Core-core repulsion = 20208.812325 eV Total energy + Delta-G solvation = -3431.559147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43643 -39.31685 -38.00723 -35.32960 -33.27504 -31.82288 -31.10987 -31.06277 -29.87798 -27.82769 -26.72969 -24.62097 -23.10036 -22.48162 -20.72099 -20.46865 -19.65141 -18.05284 -16.85725 -16.44817 -16.15660 -15.91402 -15.50470 -15.26209 -15.17551 -14.47892 -14.46594 -14.40427 -13.97960 -13.64568 -13.35825 -13.11879 -12.66260 -12.64081 -12.44472 -12.39044 -12.26081 -12.17699 -11.85514 -11.80240 -11.59497 -11.14456 -11.12031 -10.87291 -10.70552 -10.61836 -10.31870 -10.24981 -9.84245 -9.77150 -9.70644 -9.29891 -9.09855 -8.69449 -8.35967 -6.00548 -4.03817 1.67671 2.90220 3.32505 3.37166 3.38696 3.46510 3.68155 4.07796 4.22061 4.44879 4.48785 4.54939 4.77706 4.79906 4.94310 5.01678 5.10528 5.13211 5.24586 5.25034 5.28471 5.34864 5.43918 5.45817 5.48867 5.53852 5.63985 5.66884 5.71376 5.78833 5.81767 5.85203 5.98459 6.13088 6.20071 6.36274 6.56172 6.62989 6.87858 7.03476 7.30341 7.64724 7.77879 7.80463 7.98230 8.38959 8.51743 9.02716 9.60105 11.10712 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.002235 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.101607 B =12525.241612 C =12950.824712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.370 3.630 3 O -0.445 6.445 4 C -0.164 4.164 5 H 0.099 0.901 6 C -0.115 4.115 7 C -0.082 4.082 8 H 0.109 0.891 9 C -0.132 4.132 10 C 0.504 3.496 11 O -0.539 6.539 12 N -0.730 5.730 13 C 0.116 3.884 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.062 4.062 25 C -0.145 4.145 26 C -0.130 4.130 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.064 -10.361 -3.678 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.245 3.755 3 O -0.318 6.318 4 C -0.183 4.183 5 H 0.117 0.883 6 C -0.152 4.152 7 C -0.101 4.101 8 H 0.127 0.873 9 C -0.172 4.172 10 C 0.290 3.710 11 O -0.416 6.416 12 N -0.381 5.381 13 C -0.007 4.007 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.062 4.062 25 C -0.202 4.202 26 C -0.187 4.187 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.775 -8.887 -3.175 30.283 hybrid contribution 1.018 -0.908 -0.402 1.422 sum -27.756 -9.796 -3.576 29.651 Atomic orbital electron populations 1.22268 0.94453 1.04474 1.04657 1.24108 0.91597 0.89528 0.70270 1.90468 1.71819 1.34730 1.34740 1.23154 0.97676 0.97726 0.99764 0.88294 1.22834 0.92650 1.02302 0.97451 1.22506 0.90895 1.00942 0.95712 0.87288 1.21709 0.93315 0.99444 1.02721 1.20673 0.84008 0.86810 0.79537 1.90719 1.84524 1.24732 1.41626 1.46252 1.06086 1.25582 1.60194 1.21612 0.85398 0.94051 0.99597 1.21877 0.93373 1.00051 1.00503 1.19029 0.90944 0.94658 0.96780 1.21168 0.90974 1.06395 1.37584 0.92711 1.25043 0.99315 0.94967 0.95201 1.69957 1.27039 1.16052 1.40214 0.86634 0.83148 0.79243 0.78811 1.20248 1.21274 1.20255 1.21804 0.95715 0.96341 0.92344 1.21847 1.00396 1.00269 0.97695 1.21648 1.02052 0.92735 1.02286 0.90115 0.89100 0.89141 0.89629 0.90429 0.88999 0.88948 0.76983 0.91927 0.91932 0.92804 0.92796 0.96298 0.96306 0.92865 0.91799 0.92267 0.92513 0.91974 0.92195 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.09 10.33 36.00 0.37 -0.72 16 2 C 0.37 3.37 4.74 -29.04 -0.14 3.24 16 3 O -0.45 -6.06 15.72 5.99 0.09 -5.97 16 4 C -0.16 -1.27 3.70 -90.87 -0.34 -1.61 16 5 H 0.10 0.53 8.06 -51.93 -0.42 0.12 16 6 C -0.12 -1.17 6.63 -25.92 -0.17 -1.34 16 7 C -0.08 -0.88 2.21 -89.81 -0.20 -1.08 16 8 H 0.11 1.56 6.85 -51.93 -0.36 1.20 16 9 C -0.13 -1.32 4.29 -27.88 -0.12 -1.44 16 10 C 0.50 7.51 7.83 -10.99 -0.09 7.42 16 11 O -0.54 -10.52 15.79 5.55 0.09 -10.43 16 12 N -0.73 -10.58 5.56 -60.29 -0.33 -10.92 16 13 C 0.12 2.12 5.67 -4.04 -0.02 2.09 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.06 -0.46 1.26 -153.60 -0.19 -0.66 16 25 C -0.14 -1.05 8.74 37.16 0.32 -0.72 16 26 C -0.13 -0.71 7.94 37.16 0.30 -0.41 16 27 H 0.08 0.26 7.97 -51.93 -0.41 -0.15 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.73 7.44 -51.93 -0.39 0.34 16 31 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 32 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.09 0.72 7.28 -51.93 -0.38 0.35 16 34 H 0.40 4.51 8.47 -40.82 -0.35 4.17 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.50 6.48 -51.93 -0.34 0.16 16 45 H 0.06 0.32 7.30 -51.93 -0.38 -0.06 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.34 7.27 -51.93 -0.38 -0.03 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -34.84 377.89 -8.11 -42.95 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.40 Total: -0.74 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.97 Total: -10.83 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.40 Total: -37.29 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.18 Total: -16.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.84 -8.11 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353688964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.228 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds