Wall clock time and date at job start Tue Mar 31 2020 07:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 119.99773 * 2 1 4 4 C 1.50698 * 120.00336 * 180.02562 * 2 1 3 5 5 H 1.08997 * 112.84684 * 335.52665 * 4 2 1 6 6 C 1.53781 * 113.61347 * 204.33513 * 4 2 1 7 7 C 1.53774 * 87.08376 * 270.88157 * 6 4 2 8 8 H 1.08997 * 113.61427 * 89.19921 * 7 6 4 9 9 C 1.52998 * 113.61666 * 220.02363 * 7 6 4 10 10 C 1.50706 * 109.46836 * 274.13176 * 9 7 6 11 11 O 1.21283 * 119.99688 * 0.02562 * 10 9 7 12 12 N 1.34771 * 119.99740 * 179.97438 * 10 9 7 13 13 C 1.46501 * 119.99679 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47157 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00426 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99903 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46880 * 60.00181 * 20 18 16 22 22 H 1.48497 * 109.46939 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47135 * 300.00395 * 20 18 16 24 24 C 1.53789 * 87.17213 * 334.61040 * 7 6 4 25 25 C 1.53001 * 113.61225 * 139.93549 * 24 7 6 26 26 C 1.52999 * 113.61542 * 270.84034 * 24 7 6 27 27 H 1.09004 * 109.47143 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47663 * 300.00003 * 1 2 3 29 29 H 1.08999 * 109.47318 * 60.00236 * 1 2 3 30 30 H 1.09001 * 113.61052 * 156.33341 * 6 4 2 31 31 H 1.09003 * 113.69238 * 25.44450 * 6 4 2 32 32 H 1.09005 * 109.47237 * 154.13465 * 9 7 6 33 33 H 1.08995 * 109.47375 * 34.13486 * 9 7 6 34 34 H 0.97003 * 120.00310 * 0.02562 * 12 10 9 35 35 H 1.09005 * 109.47162 * 60.00089 * 13 12 10 36 36 H 1.08995 * 109.47725 * 299.99961 * 13 12 10 37 37 H 1.08998 * 109.47006 * 299.99732 * 14 13 12 38 38 H 1.08995 * 109.47092 * 60.00047 * 14 13 12 39 39 H 1.09004 * 109.47208 * 300.00349 * 15 14 13 40 40 H 1.09005 * 109.47129 * 59.99977 * 15 14 13 41 41 H 0.96992 * 119.99863 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46931 * 66.45578 * 25 24 7 43 43 H 1.08998 * 109.46697 * 186.45315 * 25 24 7 44 44 H 1.08992 * 109.47545 * 306.45085 * 25 24 7 45 45 H 1.09004 * 109.46732 * 59.99822 * 26 24 7 46 46 H 1.08998 * 109.47319 * 179.97438 * 26 24 7 47 47 H 1.08996 * 109.47239 * 300.00328 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 -0.0006 5 1 1.6804 -2.1289 0.4152 6 6 3.6803 -1.1968 0.5801 7 6 4.1527 -0.8622 -0.8445 8 1 4.1264 0.2030 -1.0744 9 6 5.4833 -1.5181 -1.2190 10 6 6.6214 -0.6470 -0.7530 11 8 6.3908 0.3955 -0.1776 12 7 7.8953 -1.0269 -0.9747 13 6 9.0016 -0.1804 -0.5212 14 6 10.3323 -0.8362 -0.8958 15 6 11.4877 0.0475 -0.4216 16 6 12.7983 -0.5987 -0.7899 17 1 12.8064 -1.5453 -1.3098 18 6 13.9872 0.0185 -0.4632 19 7 13.9774 1.1710 0.1704 20 14 15.6118 -0.7829 -0.9191 21 1 15.6862 -0.9472 -2.3932 22 1 16.7332 0.0749 -0.4590 23 1 15.7074 -2.1138 -0.2672 24 6 2.9220 -1.6325 -1.3516 25 6 2.2352 -0.9709 -2.5481 26 6 3.1780 -3.1261 -1.5627 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.0704 -2.1415 0.9588 31 1 3.8036 -0.3748 1.2854 32 1 5.5373 -1.6383 -2.3010 33 1 5.5541 -2.4950 -0.7409 34 1 8.0796 -1.8609 -1.4346 35 1 8.9472 -0.0602 0.5608 36 1 8.9313 0.7966 -0.9993 37 1 10.4030 -1.8133 -0.4179 38 1 10.3864 -0.9561 -1.9777 39 1 11.4172 1.0249 -0.8990 40 1 11.4334 0.1670 0.6606 41 1 14.8137 1.6053 0.3999 42 1 2.8993 -1.0031 -3.4117 43 1 1.3133 -1.5049 -2.7786 44 1 2.0035 0.0663 -2.3063 45 1 3.4796 -3.5799 -0.6187 46 1 2.2660 -3.6040 -1.9203 47 1 3.9706 -3.2583 -2.2991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353688964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:51 Heat of formation + Delta-G solvation = -110.001276 kcal Electronic energy + Delta-G solvation = -23641.361256 eV Core-core repulsion = 20208.812325 eV Total energy + Delta-G solvation = -3432.548931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17512 -40.52777 -38.85141 -36.94443 -35.18429 -33.23392 -32.24309 -31.67982 -30.70088 -28.52197 -28.25712 -25.73519 -24.53315 -23.40032 -22.32366 -21.48454 -20.75204 -18.78138 -18.57305 -17.88526 -17.13182 -16.86051 -16.62180 -16.49657 -16.26536 -15.98437 -15.73006 -15.26875 -14.82377 -14.62913 -14.34382 -14.04142 -13.91231 -13.77770 -13.62930 -13.18214 -13.09356 -12.98873 -12.91037 -12.82856 -12.69943 -12.56610 -12.46711 -12.41559 -11.86193 -11.80636 -11.68656 -11.59330 -11.27170 -11.07062 -10.92965 -10.67627 -10.56381 -10.40799 -10.07545 -8.20461 -6.32704 0.98296 1.40801 1.44467 1.52355 1.70561 2.26051 2.42547 3.08376 3.12875 3.39976 3.54812 3.76282 3.87381 3.97457 4.17478 4.18288 4.25074 4.31279 4.44984 4.52735 4.56334 4.59734 4.62965 4.67103 4.69243 4.82440 4.86745 4.90764 4.92026 5.00340 5.04957 5.08985 5.11850 5.14867 5.21288 5.22702 5.39047 5.45292 5.49013 5.52814 5.67171 5.67895 5.82097 6.20188 6.64365 6.64765 6.84860 7.34565 7.37134 8.91603 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.002235 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.101607 B =12525.241612 C =12950.824712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.366 3.634 3 O -0.505 6.505 4 C -0.159 4.159 5 H 0.136 0.864 6 C -0.123 4.123 7 C -0.095 4.095 8 H 0.061 0.939 9 C -0.119 4.119 10 C 0.498 3.502 11 O -0.594 6.594 12 N -0.717 5.717 13 C 0.129 3.871 14 C -0.099 4.099 15 C 0.022 3.978 16 C -0.541 4.541 17 H 0.069 0.931 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.043 4.043 25 C -0.146 4.146 26 C -0.129 4.129 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.034 0.966 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.417 0.583 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.069 0.931 39 H -0.011 1.011 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.320 -14.698 -5.265 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.244 3.756 3 O -0.382 6.382 4 C -0.178 4.178 5 H 0.154 0.846 6 C -0.160 4.160 7 C -0.114 4.114 8 H 0.079 0.921 9 C -0.158 4.158 10 C 0.287 3.713 11 O -0.475 6.475 12 N -0.370 5.370 13 C 0.004 3.996 14 C -0.137 4.137 15 C -0.015 4.015 16 C -0.579 4.579 17 H 0.087 0.913 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.043 4.043 25 C -0.203 4.203 26 C -0.186 4.186 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.254 0.746 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -30.058 -13.291 -4.791 33.213 hybrid contribution 1.375 0.518 0.125 1.475 sum -28.683 -12.772 -4.666 31.743 Atomic orbital electron populations 1.22301 0.91321 1.06756 1.04991 1.24902 0.93517 0.89238 0.67901 1.90465 1.73282 1.36800 1.37643 1.23222 0.96649 0.98032 0.99910 0.84600 1.22884 0.95101 1.01667 0.96335 1.22445 0.93056 0.99023 0.96871 0.92096 1.21773 0.90197 0.99332 1.04476 1.21669 0.84859 0.86568 0.78229 1.90711 1.85252 1.27430 1.44082 1.46033 1.05121 1.25792 1.60011 1.21171 0.86262 0.93810 0.98311 1.21580 0.91554 0.99304 1.01280 1.18955 0.93280 0.94515 0.94789 1.21652 0.91895 1.06952 1.37429 0.91306 1.26092 1.03819 0.95490 0.94994 1.70118 1.28160 1.17835 1.41571 0.85420 0.77654 0.78409 0.79066 1.18906 1.21236 1.18854 1.21762 0.93039 0.97587 0.91953 1.21865 1.01666 0.99153 0.97617 1.21704 1.03455 0.90289 1.03162 0.86848 0.88774 0.88627 0.87373 0.94728 0.86278 0.85460 0.74584 0.93812 0.94023 0.91115 0.91247 0.99291 0.99199 0.92812 0.91637 0.89653 0.95058 0.91088 0.90246 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 10.33 71.23 0.74 -1.08 16 2 C 0.37 6.71 4.74 29.10 0.14 6.85 16 3 O -0.51 -15.14 15.72 -1.46 -0.02 -15.17 16 4 C -0.16 -2.20 3.70 -10.96 -0.04 -2.24 16 5 H 0.14 0.89 8.06 -2.39 -0.02 0.87 16 6 C -0.12 -2.48 6.63 31.12 0.21 -2.27 16 7 C -0.10 -2.03 2.21 -10.27 -0.02 -2.05 16 8 H 0.06 1.92 6.85 -2.39 -0.02 1.90 16 9 C -0.12 -2.14 4.29 29.85 0.13 -2.01 16 10 C 0.50 14.90 7.83 87.66 0.69 15.58 16 11 O -0.59 -24.74 15.79 -3.04 -0.05 -24.79 16 12 N -0.72 -20.19 5.56 -463.05 -2.57 -22.76 16 13 C 0.13 4.82 5.67 86.38 0.49 5.31 16 14 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 15 C 0.02 1.19 4.97 29.85 0.15 1.34 16 16 C -0.54 -30.62 9.11 25.60 0.23 -30.38 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 19 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 20 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 C -0.04 -0.54 1.26 -51.59 -0.07 -0.61 16 25 C -0.15 -1.84 8.74 71.98 0.63 -1.21 16 26 C -0.13 -0.78 7.94 71.98 0.57 -0.21 16 27 H 0.11 0.30 7.97 -2.38 -0.02 0.28 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 1.63 7.44 -2.39 -0.02 1.61 16 31 H 0.03 0.98 7.87 -2.39 -0.02 0.96 16 32 H 0.12 1.54 7.92 -2.38 -0.02 1.52 16 33 H 0.13 1.47 7.28 -2.39 -0.02 1.45 16 34 H 0.42 8.35 8.47 -92.71 -0.79 7.56 16 35 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 39 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 40 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.03 0.56 6.48 -2.39 -0.02 0.54 16 45 H 0.07 0.35 7.30 -2.39 -0.02 0.33 16 46 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.07 0.38 7.27 -2.39 -0.02 0.36 16 Total: -1.00 -82.95 377.89 4.28 -78.67 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.15 Total: 12.52 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.46 Total: -16.64 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.29 Total: -80.77 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.07 Total: -39.95 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -82.95 4.28 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353688964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds