Wall clock time and date at job start Tue Mar 31 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00239 * 2 1 4 4 N 1.46499 * 109.47082 * 124.99718 * 3 2 1 5 5 C 1.46506 * 119.99956 * 90.00277 * 4 3 2 6 6 C 1.50696 * 109.46871 * 89.99486 * 5 4 3 7 7 H 1.07999 * 120.00319 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99717 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.34771 * 120.00412 * 270.00311 * 4 3 2 15 15 O 1.21282 * 120.00196 * 180.02562 * 14 4 3 16 16 C 1.50709 * 120.00019 * 359.97438 * 14 4 3 17 17 O 1.42900 * 109.47253 * 180.02562 * 16 14 4 18 18 C 1.42892 * 113.99696 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.47301 * 329.99630 * 18 17 16 20 20 C 1.52992 * 109.47358 * 90.00105 * 18 17 16 21 21 C 1.53006 * 109.47502 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47352 * 300.00264 * 21 20 18 23 23 C 1.53006 * 109.46654 * 59.99493 * 22 21 20 24 24 C 1.52995 * 109.47578 * 299.99954 * 23 22 21 25 25 H 1.08997 * 109.47109 * 300.00302 * 24 23 22 26 26 C 1.53000 * 109.47233 * 180.02562 * 24 23 22 27 27 H 1.07998 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00140 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99723 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46923 * 5.00206 * 3 2 1 31 31 H 1.08991 * 109.47303 * 245.00150 * 3 2 1 32 32 H 1.09005 * 109.46943 * 329.99807 * 5 4 3 33 33 H 1.09002 * 109.47064 * 210.00069 * 5 4 3 34 34 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46687 * 300.00391 * 16 14 4 36 36 H 1.09002 * 109.46552 * 60.00379 * 16 14 4 37 37 H 1.08997 * 109.47665 * 300.00231 * 20 18 17 38 38 H 1.09011 * 109.47172 * 59.99835 * 20 18 17 39 39 H 1.09005 * 109.46583 * 60.00502 * 21 20 18 40 40 H 1.08998 * 109.47191 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47394 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47153 * 299.99729 * 22 21 20 43 43 H 1.08997 * 109.47148 * 60.00233 * 23 22 21 44 44 H 1.09002 * 109.46414 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47020 * 299.99989 * 26 24 23 46 46 H 1.09001 * 109.47204 * 60.00142 * 26 24 23 47 47 H 1.08997 * 109.46680 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3590 0.8256 0.9695 6 6 5.2616 1.9479 0.5259 7 1 4.8587 2.9392 0.3797 8 6 6.6018 1.7091 0.3068 9 7 7.3896 2.6887 -0.0799 10 14 7.2983 -0.0057 0.5590 11 1 7.7567 -0.1521 1.9638 12 1 6.2463 -1.0143 0.2738 13 1 8.4458 -0.2139 -0.3604 14 6 2.5937 1.8222 2.3214 15 8 3.3640 1.8448 3.2579 16 6 1.1895 2.3435 2.4879 17 8 1.0088 2.8058 3.8280 18 6 -0.2966 3.3229 4.0932 19 1 -0.7102 3.7514 3.1803 20 6 -1.2035 2.1920 4.5823 21 6 -2.6011 2.7458 4.8670 22 6 -2.5110 3.8290 5.9437 23 6 -1.6039 4.9600 5.4545 24 6 -0.2064 4.4062 5.1700 25 1 0.2074 3.9776 6.0827 26 6 0.7007 5.5373 4.6814 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 4.3667 0.0350 0.2191 33 1 4.7141 0.4277 1.9201 34 1 8.3325 2.5207 -0.2337 35 1 1.0233 3.1676 1.7941 36 1 0.4782 1.5442 2.2799 37 1 -1.2675 1.4201 3.8154 38 1 -0.7899 1.7636 5.4954 39 1 -3.0149 3.1744 3.9541 40 1 -3.2473 1.9400 5.2149 41 1 -3.5065 4.2238 6.1462 42 1 -2.0972 3.4004 6.8565 43 1 -2.0177 5.3886 4.5418 44 1 -1.5401 5.7319 6.2215 45 1 0.2871 5.9663 3.7688 46 1 0.7649 6.3087 5.4488 47 1 1.6962 5.1426 4.4783 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359394862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:38 Heat of formation + Delta-G solvation = -79.556110 kcal Electronic energy + Delta-G solvation = -24739.879747 eV Core-core repulsion = 21308.651018 eV Total energy + Delta-G solvation = -3431.228729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.75604 -38.89671 -36.38185 -35.65923 -33.27903 -32.68599 -32.11767 -30.30147 -28.92460 -27.07982 -26.13764 -25.43660 -22.67155 -22.04317 -21.42660 -20.18914 -19.94563 -18.48562 -17.10329 -16.90906 -16.35672 -15.72484 -15.52779 -14.86125 -14.81315 -14.53338 -14.38767 -14.09357 -13.79304 -13.43634 -13.21420 -13.17204 -12.66356 -12.46922 -12.35483 -12.24414 -11.99184 -11.89727 -11.58438 -11.40155 -11.26206 -11.15745 -11.02297 -10.89591 -10.68231 -10.52096 -10.48699 -10.34136 -10.15347 -9.59379 -9.46512 -9.30162 -8.91302 -8.58053 -7.77241 -6.08003 -4.06856 2.25516 3.26689 3.30403 3.33985 3.36755 3.39297 4.18200 4.40370 4.51278 4.54568 4.75078 4.92028 4.97234 5.02515 5.11172 5.13269 5.17342 5.25393 5.26612 5.31284 5.32113 5.35922 5.43660 5.55138 5.56239 5.62804 5.78376 5.81030 5.89453 5.91913 5.92520 5.99018 6.04693 6.10215 6.13597 6.28002 6.42067 6.61908 6.63333 6.76757 6.93509 7.21613 7.37265 7.61178 8.20126 8.47273 8.93329 8.98761 9.52065 11.05363 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.003825 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.640400 B = 7319.455717 C = 8198.492833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.133 3.867 4 N -0.590 5.590 5 C 0.218 3.782 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.266 1.266 13 H -0.285 1.285 14 C 0.511 3.489 15 O -0.517 6.517 16 C 0.046 3.954 17 O -0.352 6.352 18 C 0.093 3.907 19 H 0.058 0.942 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.087 4.087 25 H 0.078 0.922 26 C -0.148 4.148 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.452 -0.028 5.406 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.178 4.178 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.097 3.903 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.703 3.297 11 H -0.199 1.199 12 H -0.191 1.191 13 H -0.211 1.211 14 C 0.296 3.704 15 O -0.392 6.392 16 C -0.034 4.034 17 O -0.270 6.270 18 C 0.035 3.965 19 H 0.076 0.924 20 C -0.181 4.181 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.105 4.105 25 H 0.097 0.903 26 C -0.205 4.205 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.659 0.032 6.013 22.478 hybrid contribution 0.253 -0.890 -0.310 0.976 sum -21.405 -0.858 5.703 22.168 Atomic orbital electron populations 1.23777 0.95687 1.01640 1.02432 1.23567 0.96151 0.99887 0.98179 1.20643 0.92307 0.94112 0.91989 1.47839 1.13775 1.61752 1.08936 1.19679 0.77909 0.95311 0.97357 1.21328 0.93006 0.96636 1.45831 0.90700 1.24853 0.96701 0.96953 0.94463 1.69897 1.05369 1.31694 1.46569 0.86855 0.79129 0.85023 0.78711 1.19864 1.19070 1.21066 1.19964 0.88259 0.78931 0.83198 1.90697 1.54851 1.54245 1.39364 1.22376 0.96346 0.99129 0.85548 1.88060 1.30632 1.81067 1.27202 1.22156 0.83430 0.93236 0.97646 0.92378 1.22064 0.95226 0.98397 1.02397 1.21489 0.96475 0.98316 0.99059 1.21578 0.99497 0.96205 0.98704 1.21592 0.94341 0.97679 1.01328 1.21173 0.95641 0.95059 0.98649 0.90333 1.21790 1.00804 0.97396 1.00502 0.88698 0.88566 0.87044 0.90969 0.88476 0.95098 0.94495 0.92552 0.91068 0.91024 0.91812 0.90968 0.92024 0.91822 0.92002 0.91788 0.91914 0.91477 0.93148 0.92843 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 13.86 29.01 0.40 -1.66 16 2 C -0.16 -2.07 9.74 -36.02 -0.35 -2.42 16 3 C 0.13 2.06 5.65 -5.19 -0.03 2.03 16 4 N -0.59 -12.19 2.44 -176.43 -0.43 -12.62 16 5 C 0.22 5.34 4.23 -5.19 -0.02 5.32 16 6 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 7 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 10 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.51 10.90 7.75 -10.98 -0.09 10.81 16 15 O -0.52 -13.58 16.08 -14.35 -0.23 -13.81 16 16 C 0.05 0.73 4.78 36.01 0.17 0.90 16 17 O -0.35 -5.84 8.84 -55.14 -0.49 -6.33 16 18 C 0.09 1.13 2.04 -26.73 -0.05 1.08 16 19 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 20 C -0.14 -1.49 5.54 -26.73 -0.15 -1.64 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 23 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 24 C -0.09 -0.97 2.46 -90.62 -0.22 -1.19 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.15 -1.76 9.05 37.16 0.34 -1.42 16 27 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 28 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.07 0.94 6.09 -51.93 -0.32 0.62 16 31 H 0.10 1.55 8.07 -51.93 -0.42 1.13 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 0.99 7.35 -51.93 -0.38 0.61 16 36 H 0.07 0.96 7.27 -51.93 -0.38 0.58 16 37 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -34.29 374.94 -8.80 -43.09 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.51 Total: -0.94 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.90 Total: -5.06 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.34 Total: -39.62 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.72 Total: -20.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.29 -8.80 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.462 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds