Wall clock time and date at job start Tue Mar 31 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00239 * 2 1 4 4 N 1.46499 * 109.47082 * 124.99718 * 3 2 1 5 5 C 1.46506 * 119.99956 * 90.00277 * 4 3 2 6 6 C 1.50696 * 109.46871 * 89.99486 * 5 4 3 7 7 H 1.07999 * 120.00319 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99717 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.34771 * 120.00412 * 270.00311 * 4 3 2 15 15 O 1.21282 * 120.00196 * 180.02562 * 14 4 3 16 16 C 1.50709 * 120.00019 * 359.97438 * 14 4 3 17 17 O 1.42900 * 109.47253 * 180.02562 * 16 14 4 18 18 C 1.42892 * 113.99696 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.47301 * 329.99630 * 18 17 16 20 20 C 1.52992 * 109.47358 * 90.00105 * 18 17 16 21 21 C 1.53006 * 109.47502 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47352 * 300.00264 * 21 20 18 23 23 C 1.53006 * 109.46654 * 59.99493 * 22 21 20 24 24 C 1.52995 * 109.47578 * 299.99954 * 23 22 21 25 25 H 1.08997 * 109.47109 * 300.00302 * 24 23 22 26 26 C 1.53000 * 109.47233 * 180.02562 * 24 23 22 27 27 H 1.07998 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00140 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99723 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46923 * 5.00206 * 3 2 1 31 31 H 1.08991 * 109.47303 * 245.00150 * 3 2 1 32 32 H 1.09005 * 109.46943 * 329.99807 * 5 4 3 33 33 H 1.09002 * 109.47064 * 210.00069 * 5 4 3 34 34 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46687 * 300.00391 * 16 14 4 36 36 H 1.09002 * 109.46552 * 60.00379 * 16 14 4 37 37 H 1.08997 * 109.47665 * 300.00231 * 20 18 17 38 38 H 1.09011 * 109.47172 * 59.99835 * 20 18 17 39 39 H 1.09005 * 109.46583 * 60.00502 * 21 20 18 40 40 H 1.08998 * 109.47191 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47394 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47153 * 299.99729 * 22 21 20 43 43 H 1.08997 * 109.47148 * 60.00233 * 23 22 21 44 44 H 1.09002 * 109.46414 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47020 * 299.99989 * 26 24 23 46 46 H 1.09001 * 109.47204 * 60.00142 * 26 24 23 47 47 H 1.08997 * 109.46680 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3590 0.8256 0.9695 6 6 5.2616 1.9479 0.5259 7 1 4.8587 2.9392 0.3797 8 6 6.6018 1.7091 0.3068 9 7 7.3896 2.6887 -0.0799 10 14 7.2983 -0.0057 0.5590 11 1 7.7567 -0.1521 1.9638 12 1 6.2463 -1.0143 0.2738 13 1 8.4458 -0.2139 -0.3604 14 6 2.5937 1.8222 2.3214 15 8 3.3640 1.8448 3.2579 16 6 1.1895 2.3435 2.4879 17 8 1.0088 2.8058 3.8280 18 6 -0.2966 3.3229 4.0932 19 1 -0.7102 3.7514 3.1803 20 6 -1.2035 2.1920 4.5823 21 6 -2.6011 2.7458 4.8670 22 6 -2.5110 3.8290 5.9437 23 6 -1.6039 4.9600 5.4545 24 6 -0.2064 4.4062 5.1700 25 1 0.2074 3.9776 6.0827 26 6 0.7007 5.5373 4.6814 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 4.3667 0.0350 0.2191 33 1 4.7141 0.4277 1.9201 34 1 8.3325 2.5207 -0.2337 35 1 1.0233 3.1676 1.7941 36 1 0.4782 1.5442 2.2799 37 1 -1.2675 1.4201 3.8154 38 1 -0.7899 1.7636 5.4954 39 1 -3.0149 3.1744 3.9541 40 1 -3.2473 1.9400 5.2149 41 1 -3.5065 4.2238 6.1462 42 1 -2.0972 3.4004 6.8565 43 1 -2.0177 5.3886 4.5418 44 1 -1.5401 5.7319 6.2215 45 1 0.2871 5.9663 3.7688 46 1 0.7649 6.3087 5.4488 47 1 1.6962 5.1426 4.4783 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359394862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:37 Heat of formation + Delta-G solvation = -100.156455 kcal Electronic energy + Delta-G solvation = -24740.773045 eV Core-core repulsion = 21308.651018 eV Total energy + Delta-G solvation = -3432.122027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.05527 -40.11772 -37.52783 -37.09327 -35.11371 -33.78195 -33.49782 -31.35534 -30.48759 -28.50141 -27.06520 -26.80217 -24.28293 -23.20640 -22.21204 -21.23776 -20.80918 -19.96143 -19.09957 -18.37940 -17.70841 -17.03681 -16.93564 -16.34262 -15.88706 -15.63159 -15.44803 -15.19148 -15.01684 -14.76479 -14.45002 -14.27844 -14.08253 -13.85816 -13.75147 -13.49060 -13.21814 -13.09642 -12.77692 -12.74955 -12.47221 -12.37523 -12.26096 -11.99191 -11.97511 -11.76332 -11.75920 -11.48845 -11.31207 -11.17282 -10.85077 -10.71655 -10.39212 -10.26185 -9.50229 -8.35636 -6.40809 1.27908 1.32555 1.35601 1.43694 1.68789 2.02226 2.29491 2.95173 2.99053 3.60479 3.76980 3.79934 3.94067 4.02110 4.05660 4.15609 4.20482 4.26654 4.29051 4.31973 4.51102 4.53568 4.54622 4.58242 4.71451 4.76239 4.81229 4.89677 4.91651 4.98203 5.07518 5.11863 5.14966 5.20133 5.30138 5.32107 5.38612 5.42569 5.43234 5.53875 5.56541 5.73262 5.80826 6.17308 6.26318 6.60180 6.63433 7.19009 7.35817 8.81333 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.003825 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.640400 B = 7319.455717 C = 8198.492833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.190 4.190 3 C 0.130 3.870 4 N -0.594 5.594 5 C 0.227 3.773 6 C -0.538 4.538 7 H 0.030 0.970 8 C 0.012 3.988 9 N -0.944 5.944 10 Si 0.947 3.053 11 H -0.278 1.278 12 H -0.237 1.237 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.061 3.939 17 O -0.388 6.388 18 C 0.087 3.913 19 H 0.077 0.923 20 C -0.140 4.140 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.088 4.088 25 H 0.058 0.942 26 C -0.145 4.145 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.015 0.985 34 H 0.269 0.731 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.165 -1.278 4.832 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.209 4.209 3 C 0.008 3.992 4 N -0.325 5.325 5 C 0.105 3.895 6 C -0.576 4.576 7 H 0.048 0.952 8 C -0.186 4.186 9 N -0.584 5.584 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.160 1.160 13 H -0.197 1.197 14 C 0.286 3.714 15 O -0.462 6.462 16 C -0.018 4.018 17 O -0.307 6.307 18 C 0.030 3.970 19 H 0.095 0.905 20 C -0.178 4.178 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.143 4.143 24 C -0.107 4.107 25 H 0.077 0.923 26 C -0.203 4.203 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -25.438 -1.222 5.394 26.032 hybrid contribution 1.331 -0.386 -0.135 1.393 sum -24.107 -1.607 5.259 24.726 Atomic orbital electron populations 1.24098 0.94516 1.03664 0.97453 1.23251 0.97023 0.97967 1.02651 1.20908 0.91900 0.96992 0.89400 1.47939 1.13113 1.60933 1.10539 1.19325 0.79663 0.94207 0.96349 1.21554 0.94187 0.96085 1.45786 0.95200 1.25844 0.97025 1.01825 0.93944 1.70047 1.05949 1.34425 1.47977 0.85732 0.79196 0.79803 0.78335 1.20388 1.16036 1.19732 1.21060 0.90208 0.77812 0.82349 1.90651 1.57155 1.56897 1.41538 1.22282 0.92774 1.00668 0.86122 1.88044 1.33535 1.81627 1.27480 1.22453 0.81887 0.94034 0.98669 0.90476 1.22045 0.96241 0.97900 1.01632 1.21485 0.94848 0.98712 0.99772 1.21593 1.00198 0.95852 0.98316 1.21559 0.92386 0.98095 1.02220 1.21215 0.97284 0.94570 0.97596 0.92301 1.21757 0.98920 0.98007 1.01576 0.86489 0.86546 0.87965 0.88125 0.89773 0.92954 0.96650 0.92214 0.88759 0.87688 0.91276 0.92794 0.90627 0.90663 0.90050 0.92567 0.90677 0.90704 0.91930 0.91662 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 13.86 67.78 0.94 -1.65 16 2 C -0.19 -4.46 9.74 25.65 0.25 -4.21 16 3 C 0.13 3.85 5.65 85.63 0.48 4.33 16 4 N -0.59 -24.82 2.44 -830.48 -2.03 -26.84 16 5 C 0.23 11.37 4.23 85.63 0.36 11.73 16 6 C -0.54 -32.37 9.94 25.60 0.25 -32.11 16 7 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 8 C 0.01 0.71 5.47 84.66 0.46 1.17 16 9 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 10 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.50 21.68 7.75 87.66 0.68 22.36 16 15 O -0.58 -32.29 16.08 16.00 0.26 -32.03 16 16 C 0.06 1.85 4.78 71.24 0.34 2.19 16 17 O -0.39 -12.88 8.84 -129.94 -1.15 -14.03 16 18 C 0.09 1.96 2.04 30.59 0.06 2.03 16 19 H 0.08 1.44 7.79 -2.39 -0.02 1.42 16 20 C -0.14 -2.63 5.54 30.59 0.17 -2.46 16 21 C -0.11 -1.41 5.92 30.60 0.18 -1.23 16 22 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 23 C -0.11 -1.52 5.20 30.59 0.16 -1.36 16 24 C -0.09 -1.91 2.46 -10.79 -0.03 -1.93 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 C -0.15 -3.47 9.05 71.98 0.65 -2.82 16 27 H 0.12 1.41 7.84 -2.91 -0.02 1.39 16 28 H 0.12 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.10 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.10 2.35 6.09 -2.38 -0.01 2.33 16 31 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 32 H 0.05 2.39 7.13 -2.38 -0.02 2.37 16 33 H 0.02 0.84 6.85 -2.39 -0.02 0.82 16 34 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.09 2.41 7.35 -2.39 -0.02 2.39 16 36 H 0.11 2.45 7.27 -2.39 -0.02 2.43 16 37 H 0.07 1.20 7.87 -2.39 -0.02 1.18 16 38 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.03 0.95 7.68 -2.39 -0.02 0.94 16 Total: -1.00 -81.18 374.94 5.27 -75.91 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.85 Total: 15.39 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.15 Total: -5.33 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.73 Total: -87.15 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -0.89 Total: -46.06 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -81.18 5.27 -75.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.245 kcal (2) G-P(sol) polarization free energy of solvation -81.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds