Wall clock time and date at job start Tue Mar 31 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 119.99786 * 2 1 4 4 N 1.46495 * 109.47467 * 124.99917 * 3 2 1 5 5 C 1.46506 * 120.00043 * 269.99771 * 4 3 2 6 6 C 1.50695 * 109.46953 * 269.99974 * 5 4 3 7 7 H 1.08002 * 120.00318 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99790 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00250 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00139 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46796 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47065 * 120.00059 * 10 8 6 13 13 H 1.48497 * 109.47332 * 240.00912 * 10 8 6 14 14 C 1.34778 * 120.00217 * 89.99564 * 4 3 2 15 15 O 1.21279 * 119.99865 * 180.02562 * 14 4 3 16 16 C 1.50692 * 120.00179 * 0.02562 * 14 4 3 17 17 O 1.42901 * 109.47528 * 179.97438 * 16 14 4 18 18 C 1.42895 * 114.00054 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.47064 * 30.00804 * 18 17 16 20 20 C 1.52997 * 109.47503 * 270.00102 * 18 17 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 18 17 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 18 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 26 26 C 1.52997 * 109.47232 * 179.97438 * 24 23 22 27 27 H 1.07997 * 120.00419 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99879 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99923 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47470 * 4.99440 * 3 2 1 31 31 H 1.09007 * 109.46770 * 244.99655 * 3 2 1 32 32 H 1.09005 * 109.46825 * 29.99544 * 5 4 3 33 33 H 1.08998 * 109.47338 * 149.99852 * 5 4 3 34 34 H 0.96994 * 119.99938 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47006 * 59.99635 * 16 14 4 36 36 H 1.09004 * 109.47060 * 300.00022 * 16 14 4 37 37 H 1.09002 * 109.47153 * 60.00043 * 20 18 17 38 38 H 1.09001 * 109.46832 * 300.00234 * 20 18 17 39 39 H 1.09004 * 109.46724 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.47194 * 299.99650 * 21 20 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 42 42 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 45 45 H 1.09001 * 109.47289 * 60.00075 * 26 24 23 46 46 H 1.09004 * 109.47261 * 179.97438 * 26 24 23 47 47 H 1.09002 * 109.47153 * 299.99992 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5182 4.0670 3.6080 9 7 1.9588 3.4663 4.6356 10 14 2.8725 5.8998 3.6771 11 1 3.5013 6.3307 2.4026 12 1 1.6023 6.6423 3.8776 13 1 3.7953 6.1834 4.8054 14 6 4.2496 0.8663 0.9824 15 8 5.0195 0.8882 1.9192 16 6 4.6972 0.3184 -0.3481 17 8 6.0576 -0.1090 -0.2540 18 6 6.5825 -0.6488 -1.4685 19 1 6.0913 -0.1755 -2.3187 20 6 6.3293 -2.1571 -1.5078 21 6 6.8919 -2.7350 -2.8079 22 6 8.3971 -2.4688 -2.8751 23 6 8.6503 -0.9604 -2.8359 24 6 8.0877 -0.3824 -1.5358 25 1 8.5788 -0.8555 -0.6854 26 6 8.3415 1.1258 -1.4962 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4025 -0.9314 32 1 1.4886 1.6968 2.5458 33 1 3.0988 1.3606 3.2260 34 1 1.7299 3.9750 5.4291 35 1 4.6125 1.0953 -1.1080 36 1 4.0681 -0.5284 -0.6225 37 1 5.2570 -2.3469 -1.4595 38 1 6.8206 -2.6303 -0.6576 39 1 6.7111 -3.8096 -2.8361 40 1 6.4009 -2.2619 -3.6583 41 1 8.8881 -2.9418 -2.0248 42 1 8.7980 -2.8809 -3.8012 43 1 9.7226 -0.7706 -2.8842 44 1 8.1593 -0.4873 -3.6863 45 1 7.8508 1.5993 -2.3466 46 1 7.9403 1.5376 -0.5701 47 1 9.4139 1.3152 -1.5439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359394866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:46 Heat of formation + Delta-G solvation = -84.075107 kcal Electronic energy + Delta-G solvation = -24589.393356 eV Core-core repulsion = 21157.968668 eV Total energy + Delta-G solvation = -3431.424688 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71045 -38.79648 -36.34472 -35.52899 -33.18931 -32.68827 -32.06468 -30.26455 -28.60224 -26.76414 -26.06809 -25.29870 -22.81079 -22.23095 -21.42350 -20.12507 -19.94318 -18.45085 -17.02350 -16.46747 -16.25966 -15.60504 -15.43993 -14.96958 -14.70477 -14.50979 -14.44724 -14.16027 -13.79225 -13.35953 -13.19605 -12.91256 -12.66561 -12.39332 -12.15605 -12.06322 -11.89830 -11.68719 -11.56132 -11.29268 -11.16898 -11.05453 -11.01974 -10.86408 -10.67471 -10.60431 -10.48980 -10.33682 -10.16987 -9.61189 -9.35213 -9.20847 -8.81514 -8.41922 -7.68644 -6.02567 -4.07191 2.41617 3.31156 3.34507 3.39249 3.42989 3.45105 4.25017 4.46502 4.53112 4.54922 4.75912 4.94187 4.98846 5.09783 5.13619 5.21304 5.26284 5.29574 5.31487 5.32629 5.35150 5.40069 5.47672 5.55503 5.62610 5.65801 5.78072 5.81126 5.89652 5.92886 5.98770 5.99027 6.10676 6.13738 6.16516 6.28087 6.40393 6.76518 6.87975 7.03860 7.32045 7.46850 7.57033 7.94254 8.24971 8.39544 8.92376 9.10846 9.57812 11.05604 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003815 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.218738 B = 7337.490800 C = 8502.138184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.249 3.751 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.518 6.518 16 C 0.045 3.955 17 O -0.352 6.352 18 C 0.093 3.907 19 H 0.058 0.942 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.087 4.087 25 H 0.078 0.922 26 C -0.147 4.147 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -10.943 -18.336 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.130 3.870 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.393 6.393 16 C -0.035 4.035 17 O -0.269 6.269 18 C 0.035 3.965 19 H 0.076 0.924 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.105 4.105 25 H 0.097 0.903 26 C -0.205 4.205 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.492 -10.861 -17.447 21.553 hybrid contribution -0.209 0.919 -0.145 0.954 sum 6.283 -9.942 -17.593 21.162 Atomic orbital electron populations 1.23822 0.95812 1.01803 1.00389 1.23429 0.96460 0.98985 1.00074 1.20602 0.93251 0.95478 0.89581 1.48184 1.10076 1.60680 1.13747 1.19286 0.95382 0.93763 0.78569 1.21479 1.40381 0.93310 1.01325 0.92376 1.24938 0.95069 0.98785 0.95325 1.69946 1.42145 1.36067 1.05163 0.86445 0.77880 0.84948 0.78163 1.19794 1.20996 1.20855 1.19955 0.82601 0.79212 0.89077 1.90696 1.52251 1.54910 1.41458 1.22395 0.84817 0.98926 0.97344 1.88067 1.25001 1.80970 1.32909 1.22155 0.94439 0.92725 0.87190 0.92399 1.22065 1.01285 0.96277 0.98476 1.21489 0.95806 1.00617 0.97438 1.21576 0.96263 0.96329 1.01813 1.21590 1.00864 0.95341 0.97135 1.21172 0.93946 0.97036 0.98370 0.90316 1.21788 1.01060 0.94840 1.02770 0.88218 0.88762 0.87851 0.89229 0.91024 0.94839 0.93840 0.92782 0.91146 0.91296 0.91834 0.90931 0.91814 0.92035 0.91779 0.92013 0.91502 0.91935 0.93185 0.91182 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.32 29.02 0.42 -1.88 16 2 C -0.17 -2.38 9.74 -36.03 -0.35 -2.73 16 3 C 0.13 2.17 5.65 -5.20 -0.03 2.14 16 4 N -0.59 -12.72 2.44 -176.44 -0.43 -13.15 16 5 C 0.25 6.59 5.16 -5.19 -0.03 6.57 16 6 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 10 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.51 11.01 7.75 -10.99 -0.09 10.92 16 15 O -0.52 -13.93 16.08 -14.35 -0.23 -14.16 16 16 C 0.05 0.72 4.78 36.00 0.17 0.89 16 17 O -0.35 -5.87 8.84 -55.14 -0.49 -6.35 16 18 C 0.09 1.13 2.05 -26.73 -0.05 1.08 16 19 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 20 C -0.14 -1.51 5.54 -26.73 -0.15 -1.66 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 23 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 24 C -0.09 -0.97 2.46 -90.62 -0.22 -1.19 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.15 -1.73 9.05 37.16 0.34 -1.39 16 27 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 28 H 0.09 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.10 1.36 7.83 -52.49 -0.41 0.95 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.07 0.94 6.44 -51.93 -0.33 0.61 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 0.97 7.35 -51.93 -0.38 0.59 16 36 H 0.07 0.92 7.51 -51.93 -0.39 0.53 16 37 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -33.72 379.01 -9.13 -42.85 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.54 Total: -1.57 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.87 Total: -4.29 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.31 Total: -39.23 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.72 Total: -20.51 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.72 -9.13 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.225 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds