Wall clock time and date at job start Tue Mar 31 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 119.99786 * 2 1 4 4 N 1.46495 * 109.47467 * 124.99917 * 3 2 1 5 5 C 1.46506 * 120.00043 * 269.99771 * 4 3 2 6 6 C 1.50695 * 109.46953 * 269.99974 * 5 4 3 7 7 H 1.08002 * 120.00318 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99790 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00250 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00139 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46796 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47065 * 120.00059 * 10 8 6 13 13 H 1.48497 * 109.47332 * 240.00912 * 10 8 6 14 14 C 1.34778 * 120.00217 * 89.99564 * 4 3 2 15 15 O 1.21279 * 119.99865 * 180.02562 * 14 4 3 16 16 C 1.50692 * 120.00179 * 0.02562 * 14 4 3 17 17 O 1.42901 * 109.47528 * 179.97438 * 16 14 4 18 18 C 1.42895 * 114.00054 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.47064 * 30.00804 * 18 17 16 20 20 C 1.52997 * 109.47503 * 270.00102 * 18 17 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 18 17 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 18 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 26 26 C 1.52997 * 109.47232 * 179.97438 * 24 23 22 27 27 H 1.07997 * 120.00419 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99879 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99923 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47470 * 4.99440 * 3 2 1 31 31 H 1.09007 * 109.46770 * 244.99655 * 3 2 1 32 32 H 1.09005 * 109.46825 * 29.99544 * 5 4 3 33 33 H 1.08998 * 109.47338 * 149.99852 * 5 4 3 34 34 H 0.96994 * 119.99938 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47006 * 59.99635 * 16 14 4 36 36 H 1.09004 * 109.47060 * 300.00022 * 16 14 4 37 37 H 1.09002 * 109.47153 * 60.00043 * 20 18 17 38 38 H 1.09001 * 109.46832 * 300.00234 * 20 18 17 39 39 H 1.09004 * 109.46724 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.47194 * 299.99650 * 21 20 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 42 42 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 45 45 H 1.09001 * 109.47289 * 60.00075 * 26 24 23 46 46 H 1.09004 * 109.47261 * 179.97438 * 26 24 23 47 47 H 1.09002 * 109.47153 * 299.99992 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5182 4.0670 3.6080 9 7 1.9588 3.4663 4.6356 10 14 2.8725 5.8998 3.6771 11 1 3.5013 6.3307 2.4026 12 1 1.6023 6.6423 3.8776 13 1 3.7953 6.1834 4.8054 14 6 4.2496 0.8663 0.9824 15 8 5.0195 0.8882 1.9192 16 6 4.6972 0.3184 -0.3481 17 8 6.0576 -0.1090 -0.2540 18 6 6.5825 -0.6488 -1.4685 19 1 6.0913 -0.1755 -2.3187 20 6 6.3293 -2.1571 -1.5078 21 6 6.8919 -2.7350 -2.8079 22 6 8.3971 -2.4688 -2.8751 23 6 8.6503 -0.9604 -2.8359 24 6 8.0877 -0.3824 -1.5358 25 1 8.5788 -0.8555 -0.6854 26 6 8.3415 1.1258 -1.4962 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4025 -0.9314 32 1 1.4886 1.6968 2.5458 33 1 3.0988 1.3606 3.2260 34 1 1.7299 3.9750 5.4291 35 1 4.6125 1.0953 -1.1080 36 1 4.0681 -0.5284 -0.6225 37 1 5.2570 -2.3469 -1.4595 38 1 6.8206 -2.6303 -0.6576 39 1 6.7111 -3.8096 -2.8361 40 1 6.4009 -2.2619 -3.6583 41 1 8.8881 -2.9418 -2.0248 42 1 8.7980 -2.8809 -3.8012 43 1 9.7226 -0.7706 -2.8842 44 1 8.1593 -0.4873 -3.6863 45 1 7.8508 1.5993 -2.3466 46 1 7.9403 1.5376 -0.5701 47 1 9.4139 1.3152 -1.5439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359394866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:46 Heat of formation + Delta-G solvation = -103.224887 kcal Electronic energy + Delta-G solvation = -24590.223753 eV Core-core repulsion = 21157.968668 eV Total energy + Delta-G solvation = -3432.255085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00257 -40.09012 -37.50680 -37.04392 -35.12757 -33.68726 -33.49472 -31.25499 -30.21256 -28.25550 -27.00536 -26.83399 -24.61919 -23.22989 -22.20601 -21.26642 -20.85354 -19.97356 -18.67313 -18.23370 -17.71147 -17.00262 -16.86967 -16.35568 -15.89822 -15.79855 -15.44650 -15.18381 -15.05628 -14.52919 -14.38834 -14.16141 -14.06279 -13.78464 -13.43105 -13.35681 -13.10557 -12.98693 -12.87402 -12.76851 -12.61347 -12.46661 -12.26017 -12.20434 -11.97718 -11.75961 -11.66731 -11.48191 -11.30499 -11.16997 -10.66205 -10.57506 -10.36458 -10.31286 -9.50953 -8.23565 -6.38346 1.30188 1.35543 1.38448 1.50068 1.74527 2.06580 2.38027 2.98450 3.06379 3.60923 3.77239 3.79915 3.98869 4.01985 4.12176 4.17793 4.25706 4.28692 4.29490 4.30503 4.45389 4.51564 4.54985 4.58331 4.77090 4.83476 4.91763 4.97758 4.98580 5.05434 5.07383 5.15133 5.19935 5.20980 5.29939 5.32105 5.38818 5.43355 5.49789 5.55949 5.70964 5.74773 5.93916 6.04687 6.24026 6.68300 6.73646 7.26493 7.43785 8.84097 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003815 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.218738 B = 7337.490800 C = 8502.138184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.130 3.870 4 N -0.596 5.596 5 C 0.265 3.735 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.494 3.506 15 O -0.586 6.586 16 C 0.061 3.939 17 O -0.388 6.388 18 C 0.087 3.913 19 H 0.078 0.922 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.088 4.088 25 H 0.057 0.943 26 C -0.144 4.144 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.025 0.975 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.031 0.969 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -11.034 -21.699 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.008 3.992 4 N -0.328 5.328 5 C 0.144 3.856 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.192 1.192 13 H -0.209 1.209 14 C 0.283 3.717 15 O -0.466 6.466 16 C -0.019 4.019 17 O -0.307 6.307 18 C 0.030 3.970 19 H 0.096 0.904 20 C -0.180 4.180 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.142 4.142 24 C -0.107 4.107 25 H 0.076 0.924 26 C -0.202 4.202 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.162 -10.969 -20.873 24.371 hybrid contribution -0.148 0.904 0.918 1.297 sum 6.014 -10.065 -19.954 23.144 Atomic orbital electron populations 1.24061 0.95493 1.02951 0.97929 1.23319 0.96868 0.98176 1.02216 1.20900 0.92805 0.96631 0.88815 1.48168 1.11256 1.59906 1.13431 1.18706 0.93910 0.92736 0.80225 1.21741 1.40546 0.94353 1.01546 0.92750 1.25878 0.94622 1.03890 0.94804 1.70064 1.42841 1.38096 1.05787 0.85351 0.78263 0.78904 0.78190 1.19039 1.19188 1.20876 1.21077 0.81805 0.78108 0.90723 1.90653 1.54057 1.57658 1.44193 1.22284 0.85341 1.00669 0.93567 1.88049 1.25259 1.81603 1.35765 1.22448 0.94812 0.93678 0.86082 0.90374 1.22055 1.01498 0.95100 0.99315 1.21483 0.95896 1.01211 0.96243 1.21591 0.96127 0.95766 1.02480 1.21557 1.01346 0.95739 0.95589 1.21214 0.93561 0.96527 0.99373 0.92399 1.21752 1.01807 0.95350 1.01269 0.88217 0.86498 0.86781 0.90080 0.87449 0.95686 0.98854 0.92387 0.88264 0.87968 0.91490 0.92858 0.90798 0.90633 0.92618 0.90043 0.90635 0.90618 0.91816 0.94963 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 14.32 67.78 0.97 -2.89 16 2 C -0.19 -4.87 9.74 25.65 0.25 -4.62 16 3 C 0.13 4.03 5.65 85.63 0.48 4.51 16 4 N -0.60 -26.05 2.44 -830.51 -2.03 -28.07 16 5 C 0.27 14.76 5.16 85.63 0.44 15.21 16 6 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 7 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 10 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.49 22.07 7.75 87.65 0.68 22.75 16 15 O -0.59 -33.43 16.08 16.01 0.26 -33.17 16 16 C 0.06 1.86 4.78 71.23 0.34 2.20 16 17 O -0.39 -12.95 8.84 -129.94 -1.15 -14.10 16 18 C 0.09 1.99 2.05 30.60 0.06 2.05 16 19 H 0.08 1.46 7.79 -2.39 -0.02 1.44 16 20 C -0.14 -2.77 5.54 30.59 0.17 -2.60 16 21 C -0.11 -1.49 5.92 30.59 0.18 -1.31 16 22 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 23 C -0.10 -1.51 5.20 30.59 0.16 -1.35 16 24 C -0.09 -1.89 2.46 -10.79 -0.03 -1.92 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 C -0.14 -3.32 9.05 71.98 0.65 -2.67 16 27 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 28 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.11 2.74 7.83 -2.91 -0.02 2.72 16 30 H 0.08 2.64 7.72 -2.39 -0.02 2.62 16 31 H 0.11 2.52 6.44 -2.38 -0.02 2.50 16 32 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 33 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.10 2.46 7.35 -2.38 -0.02 2.44 16 36 H 0.10 2.44 7.51 -2.38 -0.02 2.42 16 37 H 0.07 1.24 7.87 -2.39 -0.02 1.22 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.03 0.97 7.68 -2.38 -0.02 0.95 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -78.47 379.01 5.54 -72.93 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.90 Total: 14.57 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.25 Total: -2.98 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.74 Total: -84.97 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.89 Total: -47.27 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -78.47 5.54 -72.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.298 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds