Wall clock time and date at job start Tue Mar 31 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.99963 * 2 1 4 4 C 1.51445 * 109.98722 * 121.29470 * 2 1 3 5 5 O 1.20757 * 126.33866 * 299.68406 * 4 2 1 6 6 C 1.51842 * 107.31704 * 119.70900 * 4 2 1 7 7 C 1.54892 * 104.43293 * 336.20915 * 6 4 2 8 8 C 1.54285 * 109.98523 * 238.71477 * 2 1 3 9 9 H 1.09000 * 110.69679 * 145.14638 * 8 2 1 10 10 C 1.53000 * 110.56852 * 22.33358 * 8 2 1 11 11 C 1.50703 * 109.46912 * 179.21944 * 10 8 2 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 8 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47194 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46974 * 299.99572 * 15 14 13 17 17 C 1.53002 * 109.47415 * 59.99942 * 15 14 13 18 18 C 1.52997 * 109.47232 * 179.97438 * 15 14 13 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 15 14 20 20 H 1.08006 * 119.99920 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 15 22 22 N 1.31520 * 120.00162 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47305 * 89.99565 * 23 21 19 25 25 H 1.48501 * 109.47354 * 209.99894 * 23 21 19 26 26 H 1.48500 * 109.47001 * 329.99944 * 23 21 19 27 27 H 1.09003 * 109.46366 * 181.29121 * 1 2 3 28 28 H 1.08998 * 109.47125 * 301.28332 * 1 2 3 29 29 H 1.09002 * 109.47509 * 61.29161 * 1 2 3 30 30 H 1.09002 * 110.44099 * 217.47092 * 6 4 2 31 31 H 1.09001 * 110.54871 * 95.00182 * 6 4 2 32 32 H 1.09002 * 110.83056 * 279.41500 * 7 6 4 33 33 H 1.08994 * 111.00171 * 155.91671 * 7 6 4 34 34 H 1.09002 * 109.47398 * 299.22021 * 10 8 2 35 35 H 1.09001 * 109.47194 * 59.22202 * 10 8 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 37 37 H 1.09002 * 109.47021 * 299.99722 * 14 13 11 38 38 H 1.09001 * 109.47001 * 59.99554 * 14 13 11 39 39 H 1.09000 * 109.46866 * 60.00225 * 16 15 14 40 40 H 1.09001 * 109.46611 * 180.02562 * 16 15 14 41 41 H 1.08988 * 109.47066 * 300.00373 * 16 15 14 42 42 H 1.08992 * 109.47063 * 59.99950 * 17 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.46733 * 299.99664 * 17 15 14 45 45 H 1.09002 * 109.47153 * 299.99992 * 18 15 14 46 46 H 1.09001 * 109.47289 * 60.00075 * 18 15 14 47 47 H 0.96996 * 119.99309 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0477 -0.7393 1.2162 5 8 1.8395 -0.4520 2.3704 6 6 2.8773 -1.9082 0.7153 7 6 2.3367 -2.1826 -0.7101 8 6 2.0573 -0.7530 -1.2391 9 1 2.9753 -0.2945 -1.6067 10 6 0.9958 -0.7853 -2.3405 11 6 1.5428 -1.5086 -3.5442 12 8 2.6706 -1.9539 -3.5233 13 7 0.7789 -1.6597 -4.6442 14 6 1.3103 -2.3633 -5.8141 15 6 0.2489 -2.3955 -6.9155 16 6 -0.9952 -3.1245 -6.4037 17 6 -0.1236 -0.9641 -7.3070 18 6 0.8042 -3.1298 -8.1376 19 6 -0.2415 -3.1621 -9.2223 20 1 -1.2056 -2.7043 -9.0567 21 6 0.0329 -3.7752 -10.4264 22 7 -0.8796 -3.8029 -11.3732 23 14 1.7006 -4.5664 -10.7130 24 1 1.6549 -5.9872 -10.2833 25 1 2.0401 -4.4966 -12.1570 26 1 2.7327 -3.8444 -9.9264 27 1 -0.3632 -1.0275 0.0232 28 1 -0.3633 0.5336 0.8782 29 1 -0.3634 0.4936 -0.9013 30 1 2.7302 -2.7802 1.3526 31 1 3.9330 -1.6395 0.6769 32 1 1.4179 -2.7677 -0.6702 33 1 3.0866 -2.6830 -1.3226 34 1 0.1097 -1.3049 -1.9760 35 1 0.7302 0.2345 -2.6191 36 1 -0.1231 -1.3031 -4.6610 37 1 2.1969 -1.8443 -6.1785 38 1 1.5753 -3.3832 -5.5353 39 1 -1.3906 -2.6009 -5.5333 40 1 -1.7512 -3.1478 -7.1886 41 1 -0.7298 -4.1441 -6.1249 42 1 0.7627 -0.4449 -7.6716 43 1 -0.8800 -0.9870 -8.0914 44 1 -0.5191 -0.4406 -6.4366 45 1 1.6903 -2.6101 -8.5021 46 1 1.0698 -4.1496 -7.8591 47 1 -0.6865 -4.2346 -12.2201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:57 Heat of formation + Delta-G solvation = -107.822715 kcal Electronic energy + Delta-G solvation = -24162.744807 eV Core-core repulsion = 20730.290346 eV Total energy + Delta-G solvation = -3432.454461 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67244 -39.53089 -37.58185 -36.71308 -33.68667 -32.24516 -31.90859 -30.53747 -27.87773 -26.62689 -26.60320 -25.39042 -24.85350 -22.49495 -20.95949 -20.05647 -19.06016 -18.27824 -17.29968 -16.88278 -16.43374 -15.98836 -15.53148 -15.33990 -15.07970 -14.36385 -14.16309 -14.01153 -13.66353 -13.52229 -13.43294 -13.01469 -12.88886 -12.74953 -12.58409 -12.36549 -12.28081 -12.11527 -11.66514 -11.29893 -11.28273 -11.16541 -11.04312 -10.97737 -10.79771 -10.65237 -10.52731 -10.00861 -9.91184 -9.77160 -9.69115 -9.42212 -9.02604 -8.83170 -8.56283 -6.07037 -4.04473 1.59793 2.72762 3.29104 3.30556 3.37527 3.41081 3.75207 4.11606 4.34348 4.43028 4.44141 4.75681 4.82521 4.86907 4.94709 5.06210 5.18962 5.21384 5.25452 5.31587 5.37644 5.46184 5.48220 5.49272 5.59666 5.62293 5.66619 5.74204 5.98854 6.03520 6.06460 6.07809 6.15104 6.27189 6.44964 6.55304 6.66035 6.86633 6.97641 7.01376 7.15946 7.16593 7.33086 7.63564 7.76743 8.33704 8.49911 8.96845 9.55655 11.05677 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.036012 B = 0.002701 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.326325 B =10362.192357 C =10797.698712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 H 0.102 0.898 4 C 0.374 3.626 5 O -0.448 6.448 6 C -0.185 4.185 7 C -0.113 4.113 8 C -0.067 4.067 9 H 0.092 0.908 10 C -0.137 4.137 11 C 0.506 3.494 12 O -0.545 6.545 13 N -0.723 5.723 14 C 0.126 3.874 15 C -0.063 4.063 16 C -0.129 4.129 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.066 3.934 22 N -0.904 5.904 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 7.165 21.385 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 H 0.120 0.880 4 C 0.249 3.751 5 O -0.321 6.321 6 C -0.222 4.222 7 C -0.150 4.150 8 C -0.086 4.086 9 H 0.110 0.890 10 C -0.177 4.177 11 C 0.292 3.708 12 O -0.423 6.423 13 N -0.374 5.374 14 C 0.003 3.997 15 C -0.063 4.063 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.135 4.135 22 N -0.543 5.543 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.667 6.931 21.814 23.181 hybrid contribution 0.439 -0.342 -0.514 0.758 sum 4.106 6.589 21.300 22.670 Atomic orbital electron populations 1.21785 0.92498 1.02636 1.02996 1.22342 0.98245 1.01379 0.95115 0.87953 1.25042 0.76557 0.84573 0.88912 1.90408 1.52168 1.67647 1.21864 1.22949 1.01508 0.98903 0.98861 1.22536 1.02244 0.96495 0.93731 1.21663 0.98430 0.96349 0.92156 0.88969 1.21847 1.00087 1.01989 0.93760 1.20622 0.85901 0.80127 0.84158 1.90673 1.19070 1.49810 1.82730 1.46211 1.18001 1.58217 1.14992 1.21615 0.97151 0.96361 0.84587 1.20687 0.94284 0.96635 0.94741 1.21774 0.98167 0.99020 0.99623 1.21770 1.01907 0.94739 1.00151 1.19592 0.97027 0.94777 0.92618 1.21075 1.00570 1.36305 0.96954 0.90411 1.25005 0.96544 0.95825 0.96094 1.69904 1.33996 1.44758 1.05616 0.86856 0.85431 0.80180 0.77279 1.20375 1.21500 1.19001 0.92038 0.92026 0.90890 0.89112 0.87724 0.91189 0.88784 0.88472 0.88655 0.76569 0.91913 0.91920 0.95008 0.90895 0.93442 0.93431 0.90897 0.95011 0.96389 0.96839 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 7.95 37.16 0.30 -0.57 16 2 C -0.15 -1.06 3.36 -90.73 -0.30 -1.36 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.37 3.35 7.18 -28.11 -0.20 3.14 16 5 O -0.45 -5.51 17.99 6.00 0.11 -5.40 16 6 C -0.18 -1.37 6.72 -26.32 -0.18 -1.55 16 7 C -0.11 -0.92 5.66 -24.69 -0.14 -1.06 16 8 C -0.07 -0.52 2.42 -88.90 -0.22 -0.73 16 9 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 10 C -0.14 -1.04 3.90 -27.88 -0.11 -1.15 16 11 C 0.51 6.01 7.62 -10.98 -0.08 5.93 16 12 O -0.54 -8.40 14.54 5.56 0.08 -8.32 16 13 N -0.72 -8.79 4.96 -60.30 -0.30 -9.09 16 14 C 0.13 1.96 4.56 -4.05 -0.02 1.94 16 15 C -0.06 -1.09 0.54 -154.51 -0.08 -1.18 16 16 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 17 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 18 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 19 C -0.51 -13.39 8.20 -34.44 -0.28 -13.68 16 20 H 0.08 2.16 5.92 -52.48 -0.31 1.84 16 21 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 22 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 23 Si 0.87 21.19 27.47 -169.99 -4.67 16.53 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 27 H 0.06 0.37 7.63 -51.93 -0.40 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.34 6.63 -51.93 -0.34 0.00 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.09 0.95 7.11 -51.93 -0.37 0.58 16 34 H 0.10 0.59 6.66 -51.93 -0.35 0.25 16 35 H 0.10 0.56 7.59 -51.93 -0.39 0.16 16 36 H 0.40 4.02 6.16 -40.82 -0.25 3.77 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 41 H 0.05 0.78 8.14 -51.94 -0.42 0.36 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 46 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -31.65 361.38 -7.43 -39.07 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.96 Total: 0.14 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.91 Total: -12.26 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.47 Total: -35.20 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.19 Total: -13.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.65 -7.43 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.748 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds