Wall clock time and date at job start Tue Mar 31 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.99963 * 2 1 4 4 C 1.51445 * 109.98722 * 121.29470 * 2 1 3 5 5 O 1.20757 * 126.33866 * 299.68406 * 4 2 1 6 6 C 1.51842 * 107.31704 * 119.70900 * 4 2 1 7 7 C 1.54892 * 104.43293 * 336.20915 * 6 4 2 8 8 C 1.54285 * 109.98523 * 238.71477 * 2 1 3 9 9 H 1.09000 * 110.69679 * 145.14638 * 8 2 1 10 10 C 1.53000 * 110.56852 * 22.33358 * 8 2 1 11 11 C 1.50703 * 109.46912 * 179.21944 * 10 8 2 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 8 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47194 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46974 * 299.99572 * 15 14 13 17 17 C 1.53002 * 109.47415 * 59.99942 * 15 14 13 18 18 C 1.52997 * 109.47232 * 179.97438 * 15 14 13 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 15 14 20 20 H 1.08006 * 119.99920 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 15 22 22 N 1.31520 * 120.00162 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47305 * 89.99565 * 23 21 19 25 25 H 1.48501 * 109.47354 * 209.99894 * 23 21 19 26 26 H 1.48500 * 109.47001 * 329.99944 * 23 21 19 27 27 H 1.09003 * 109.46366 * 181.29121 * 1 2 3 28 28 H 1.08998 * 109.47125 * 301.28332 * 1 2 3 29 29 H 1.09002 * 109.47509 * 61.29161 * 1 2 3 30 30 H 1.09002 * 110.44099 * 217.47092 * 6 4 2 31 31 H 1.09001 * 110.54871 * 95.00182 * 6 4 2 32 32 H 1.09002 * 110.83056 * 279.41500 * 7 6 4 33 33 H 1.08994 * 111.00171 * 155.91671 * 7 6 4 34 34 H 1.09002 * 109.47398 * 299.22021 * 10 8 2 35 35 H 1.09001 * 109.47194 * 59.22202 * 10 8 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 37 37 H 1.09002 * 109.47021 * 299.99722 * 14 13 11 38 38 H 1.09001 * 109.47001 * 59.99554 * 14 13 11 39 39 H 1.09000 * 109.46866 * 60.00225 * 16 15 14 40 40 H 1.09001 * 109.46611 * 180.02562 * 16 15 14 41 41 H 1.08988 * 109.47066 * 300.00373 * 16 15 14 42 42 H 1.08992 * 109.47063 * 59.99950 * 17 15 14 43 43 H 1.08996 * 109.47407 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.46733 * 299.99664 * 17 15 14 45 45 H 1.09002 * 109.47153 * 299.99992 * 18 15 14 46 46 H 1.09001 * 109.47289 * 60.00075 * 18 15 14 47 47 H 0.96996 * 119.99309 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0477 -0.7393 1.2162 5 8 1.8395 -0.4520 2.3704 6 6 2.8773 -1.9082 0.7153 7 6 2.3367 -2.1826 -0.7101 8 6 2.0573 -0.7530 -1.2391 9 1 2.9753 -0.2945 -1.6067 10 6 0.9958 -0.7853 -2.3405 11 6 1.5428 -1.5086 -3.5442 12 8 2.6706 -1.9539 -3.5233 13 7 0.7789 -1.6597 -4.6442 14 6 1.3103 -2.3633 -5.8141 15 6 0.2489 -2.3955 -6.9155 16 6 -0.9952 -3.1245 -6.4037 17 6 -0.1236 -0.9641 -7.3070 18 6 0.8042 -3.1298 -8.1376 19 6 -0.2415 -3.1621 -9.2223 20 1 -1.2056 -2.7043 -9.0567 21 6 0.0329 -3.7752 -10.4264 22 7 -0.8796 -3.8029 -11.3732 23 14 1.7006 -4.5664 -10.7130 24 1 1.6549 -5.9872 -10.2833 25 1 2.0401 -4.4966 -12.1570 26 1 2.7327 -3.8444 -9.9264 27 1 -0.3632 -1.0275 0.0232 28 1 -0.3633 0.5336 0.8782 29 1 -0.3634 0.4936 -0.9013 30 1 2.7302 -2.7802 1.3526 31 1 3.9330 -1.6395 0.6769 32 1 1.4179 -2.7677 -0.6702 33 1 3.0866 -2.6830 -1.3226 34 1 0.1097 -1.3049 -1.9760 35 1 0.7302 0.2345 -2.6191 36 1 -0.1231 -1.3031 -4.6610 37 1 2.1969 -1.8443 -6.1785 38 1 1.5753 -3.3832 -5.5353 39 1 -1.3906 -2.6009 -5.5333 40 1 -1.7512 -3.1478 -7.1886 41 1 -0.7298 -4.1441 -6.1249 42 1 0.7627 -0.4449 -7.6716 43 1 -0.8800 -0.9870 -8.0914 44 1 -0.5191 -0.4406 -6.4366 45 1 1.6903 -2.6101 -8.5021 46 1 1.0698 -4.1496 -7.8591 47 1 -0.6865 -4.2346 -12.2201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360410269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:56 Heat of formation + Delta-G solvation = -127.326911 kcal Electronic energy + Delta-G solvation = -24163.590573 eV Core-core repulsion = 20730.290346 eV Total energy + Delta-G solvation = -3433.300227 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41902 -40.48996 -38.78831 -37.60769 -35.12604 -33.95761 -32.58444 -31.24457 -29.67568 -27.95098 -27.73135 -25.99387 -25.72373 -24.18556 -21.83130 -20.91670 -19.86452 -19.46056 -18.88711 -18.13781 -17.24624 -16.87149 -16.45468 -16.36914 -16.01849 -15.83080 -15.35794 -15.30755 -14.91327 -14.49114 -14.21911 -14.16121 -14.13385 -13.85568 -13.67236 -13.44338 -13.05286 -12.90495 -12.85066 -12.79521 -12.55176 -12.28264 -12.27233 -12.13679 -11.87698 -11.75629 -11.60021 -11.47546 -11.36166 -11.22356 -10.89829 -10.69952 -10.63784 -10.34841 -9.91353 -8.21969 -6.21827 0.91186 1.35925 1.38925 1.48604 1.82880 2.36586 2.39366 3.13652 3.14122 3.49249 3.69485 3.85339 3.96824 4.10105 4.13927 4.20282 4.21425 4.29422 4.39007 4.52779 4.61551 4.65743 4.69083 4.75972 4.82943 4.85775 4.92215 4.94488 4.99342 5.06140 5.07364 5.12650 5.13133 5.25702 5.33154 5.36914 5.41558 5.43382 5.45086 5.56280 5.63273 5.73075 5.78985 6.38963 6.48629 6.73761 6.85592 7.41001 7.43487 8.93626 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.036012 B = 0.002701 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.326325 B =10362.192357 C =10797.698712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 H 0.114 0.886 4 C 0.374 3.626 5 O -0.487 6.487 6 C -0.182 4.182 7 C -0.111 4.111 8 C -0.063 4.063 9 H 0.083 0.917 10 C -0.129 4.129 11 C 0.504 3.496 12 O -0.583 6.583 13 N -0.715 5.715 14 C 0.140 3.860 15 C -0.058 4.058 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.005 4.005 19 C -0.500 4.500 20 H 0.053 0.947 21 C 0.004 3.996 22 N -0.952 5.952 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.252 1.252 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.412 0.588 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 8.105 23.216 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 H 0.132 0.868 4 C 0.252 3.748 5 O -0.362 6.362 6 C -0.219 4.219 7 C -0.149 4.149 8 C -0.082 4.082 9 H 0.102 0.898 10 C -0.168 4.168 11 C 0.293 3.707 12 O -0.463 6.463 13 N -0.368 5.368 14 C 0.016 3.984 15 C -0.059 4.059 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.043 4.043 19 C -0.538 4.538 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.594 5.594 23 Si 0.759 3.241 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.175 1.175 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.250 0.750 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.031 0.969 46 H 0.030 0.970 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.865 7.884 23.659 25.236 hybrid contribution 0.348 -0.616 -1.051 1.267 sum 4.213 7.267 22.608 24.118 Atomic orbital electron populations 1.21841 0.91419 1.03034 1.03793 1.22282 0.99004 1.01458 0.93390 0.86810 1.25399 0.75799 0.84737 0.88828 1.90400 1.53670 1.68761 1.23416 1.22952 1.01803 0.98679 0.98512 1.22478 1.01889 0.96915 0.93587 1.21607 0.98352 0.95815 0.92459 0.89818 1.21911 1.00346 1.03196 0.91353 1.21371 0.85229 0.79397 0.84732 1.90674 1.20920 1.51338 1.83382 1.46053 1.18696 1.57983 1.14105 1.21184 0.95935 0.96164 0.85160 1.20547 0.95082 0.96708 0.93526 1.21702 0.96835 0.99372 1.00169 1.21700 1.00946 0.94461 1.00971 1.19583 0.95708 0.95389 0.93612 1.21384 1.00489 1.34232 0.97735 0.92937 1.25841 1.00051 0.97051 0.96237 1.70044 1.36209 1.46787 1.06312 0.85903 0.81529 0.79522 0.77150 1.19758 1.21572 1.17541 0.91793 0.92751 0.88700 0.88786 0.86903 0.90642 0.90810 0.86135 0.85797 0.74987 0.93079 0.92997 0.90900 0.93875 0.93832 0.93859 0.93865 0.90887 0.96858 0.97007 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.95 71.98 0.57 -0.67 16 2 C -0.14 -1.57 3.36 -10.87 -0.04 -1.61 16 3 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.37 6.11 7.18 29.70 0.21 6.32 16 5 O -0.49 -11.59 17.99 -1.44 -0.03 -11.62 16 6 C -0.18 -2.46 6.72 30.86 0.21 -2.25 16 7 C -0.11 -1.62 5.66 31.92 0.18 -1.44 16 8 C -0.06 -0.79 2.42 -9.68 -0.02 -0.81 16 9 H 0.08 1.23 8.03 -2.39 -0.02 1.21 16 10 C -0.13 -1.40 3.90 29.85 0.12 -1.28 16 11 C 0.50 10.39 7.62 87.66 0.67 11.06 16 12 O -0.58 -16.95 14.54 -3.02 -0.04 -16.99 16 13 N -0.72 -14.91 4.96 -463.07 -2.30 -17.21 16 14 C 0.14 4.07 4.56 86.38 0.39 4.46 16 15 C -0.06 -1.93 0.54 -52.18 -0.03 -1.96 16 16 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 17 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 18 C -0.01 -0.22 3.11 29.85 0.09 -0.13 16 19 C -0.50 -26.66 8.20 25.60 0.21 -26.45 16 20 H 0.05 3.01 5.92 -2.91 -0.02 3.00 16 21 C 0.00 0.24 5.47 84.65 0.46 0.71 16 22 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 23 Si 0.93 43.92 27.47 68.60 1.88 45.80 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 27 H 0.06 0.54 7.63 -2.39 -0.02 0.52 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.42 6.63 -2.39 -0.02 0.40 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.01 8.02 -2.39 -0.02 0.99 16 33 H 0.07 1.42 7.11 -2.39 -0.02 1.40 16 34 H 0.12 0.84 6.66 -2.39 -0.02 0.82 16 35 H 0.12 0.74 7.59 -2.39 -0.02 0.72 16 36 H 0.41 6.33 6.16 -92.70 -0.57 5.76 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 40 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 44 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 45 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 46 H 0.01 0.51 7.57 -2.39 -0.02 0.50 16 47 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -71.17 361.38 4.33 -66.84 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.33 Total: 11.60 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.19 Total: -20.55 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -2.00 Total: -75.08 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.07 Total: -28.61 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -71.17 4.33 -66.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.488 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds