Wall clock time and date at job start Tue Mar 31 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.97063 * 2 1 4 4 C 1.51444 * 110.01731 * 238.70725 * 2 1 3 5 5 O 1.20759 * 126.34260 * 60.26059 * 4 2 1 6 6 C 1.51844 * 107.31703 * 240.27571 * 4 2 1 7 7 C 1.54887 * 104.43492 * 23.79043 * 6 4 2 8 8 C 1.54283 * 109.98072 * 121.27306 * 2 1 3 9 9 H 1.09003 * 110.56461 * 214.98171 * 8 2 1 10 10 C 1.53002 * 110.57155 * 337.69652 * 8 2 1 11 11 C 1.50696 * 109.46923 * 185.00340 * 10 8 2 12 12 O 1.21284 * 120.00489 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99757 * 180.02562 * 11 10 8 14 14 C 1.46506 * 120.00264 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47317 * 59.99940 * 15 14 13 17 17 C 1.52992 * 109.46961 * 299.99478 * 15 14 13 18 18 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 15 14 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99861 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00522 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47376 * 59.99570 * 23 21 19 25 25 H 1.48496 * 109.47319 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46921 * 299.99580 * 23 21 19 27 27 H 1.08996 * 109.47126 * 298.72485 * 1 2 3 28 28 H 1.08996 * 109.46724 * 58.73431 * 1 2 3 29 29 H 1.09005 * 109.46789 * 178.72411 * 1 2 3 30 30 H 1.08998 * 110.44467 * 142.53290 * 6 4 2 31 31 H 1.08999 * 110.44160 * 264.93006 * 6 4 2 32 32 H 1.08992 * 110.83701 * 204.16381 * 7 6 4 33 33 H 1.09006 * 110.83047 * 80.58144 * 7 6 4 34 34 H 1.09000 * 109.46986 * 65.00492 * 10 8 2 35 35 H 1.08996 * 109.47407 * 305.00721 * 10 8 2 36 36 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 37 37 H 1.09000 * 109.47020 * 59.99522 * 14 13 11 38 38 H 1.09001 * 109.46379 * 299.99687 * 14 13 11 39 39 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 40 40 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.47261 * 59.99813 * 16 15 14 42 42 H 1.09001 * 109.47066 * 180.02562 * 17 15 14 43 43 H 1.08996 * 109.47747 * 300.00196 * 17 15 14 44 44 H 1.09002 * 109.47103 * 60.00608 * 17 15 14 45 45 H 1.08993 * 109.46955 * 300.00075 * 18 15 14 46 46 H 1.09000 * 109.47050 * 59.99904 * 18 15 14 47 47 H 0.96992 * 120.00310 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0485 -0.7391 -1.2159 5 8 1.8401 -0.4524 -2.3704 6 6 2.8785 -1.9076 -0.7147 7 6 2.3377 -2.1822 0.7104 8 6 2.0573 -0.7527 1.2393 9 1 2.9740 -0.2911 1.6064 10 6 0.9954 -0.7854 2.3404 11 6 1.5763 -1.4160 3.5797 12 8 2.7264 -1.8010 3.5823 13 7 0.8177 -1.5523 4.6853 14 6 1.3824 -2.1648 5.8904 15 6 0.3205 -2.1976 6.9914 16 6 -0.8806 -3.0181 6.5172 17 6 -0.1299 -0.7702 7.3081 18 6 0.9103 -2.8379 8.2497 19 6 -0.1354 -2.8697 9.3344 20 1 -1.1218 -2.4725 9.1453 21 6 0.1674 -3.4048 10.5684 22 7 1.3687 -3.8881 10.7988 23 14 -1.1290 -3.4449 11.9127 24 1 -2.2948 -4.2413 11.4526 25 1 -0.5567 -4.0662 13.1340 26 1 -1.5662 -2.0594 12.2201 27 1 -0.3633 0.4939 0.9012 28 1 -0.3632 0.5334 -0.8784 29 1 -0.3633 -1.0275 -0.0229 30 1 2.7322 -2.7797 -1.3520 31 1 3.9337 -1.6369 -0.6778 32 1 3.0901 -2.6809 1.3213 33 1 1.4191 -2.7677 0.6703 34 1 0.1395 -1.3696 2.0025 35 1 0.6748 0.2315 2.5663 36 1 -0.1021 -1.2441 4.6834 37 1 2.2379 -1.5800 6.2284 38 1 1.7037 -3.1816 5.6645 39 1 -1.3009 -2.5624 5.6207 40 1 -1.6369 -3.0418 7.3018 41 1 -0.5597 -4.0351 6.2916 42 1 -0.8861 -0.7935 8.0928 43 1 0.7258 -0.1857 7.6459 44 1 -0.5501 -0.3145 6.4116 45 1 1.2309 -3.8548 8.0237 46 1 1.7662 -2.2537 8.5876 47 1 1.5816 -4.2649 11.6668 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:00 Heat of formation + Delta-G solvation = -111.664771 kcal Electronic energy + Delta-G solvation = -24090.672123 eV Core-core repulsion = 20658.051058 eV Total energy + Delta-G solvation = -3432.621065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62693 -39.46624 -37.48798 -36.65396 -33.62883 -32.23703 -31.87676 -30.48569 -27.20373 -26.55354 -26.53755 -25.36062 -24.84088 -22.84222 -20.95129 -20.00628 -19.03517 -18.29708 -17.24510 -16.46507 -16.32491 -15.91209 -15.46385 -15.22320 -15.05173 -14.53297 -14.22669 -13.99363 -13.58161 -13.45286 -13.14756 -13.01997 -12.85882 -12.70882 -12.52654 -12.29493 -12.08020 -12.02592 -11.64115 -11.26939 -11.18785 -11.03523 -10.93699 -10.89539 -10.77311 -10.66288 -10.43574 -10.29741 -9.91051 -9.78732 -9.63744 -9.18003 -8.96182 -8.74344 -8.38323 -6.02402 -4.03993 1.62021 2.79630 3.29869 3.35236 3.35641 3.39249 3.77705 4.13904 4.37473 4.42741 4.48058 4.78391 4.86696 4.89651 4.97753 5.09375 5.21729 5.25928 5.32928 5.34395 5.45421 5.51815 5.51994 5.59041 5.64831 5.69958 5.71213 5.76621 6.00177 6.06817 6.12786 6.18572 6.25682 6.35450 6.53828 6.58999 6.73594 7.02705 7.03751 7.09347 7.18155 7.60650 7.72689 7.73090 7.95983 8.36869 8.42102 9.00613 9.59257 11.08994 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.042131 B = 0.002535 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.432002 B =11043.477819 C =11359.701634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 H 0.102 0.898 4 C 0.374 3.626 5 O -0.449 6.449 6 C -0.184 4.184 7 C -0.113 4.113 8 C -0.068 4.068 9 H 0.093 0.907 10 C -0.136 4.136 11 C 0.505 3.495 12 O -0.545 6.545 13 N -0.723 5.723 14 C 0.128 3.872 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.036 3.964 19 C -0.512 4.512 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.028 0.972 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 7.028 -19.921 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 H 0.120 0.880 4 C 0.249 3.751 5 O -0.321 6.321 6 C -0.222 4.222 7 C -0.150 4.150 8 C -0.086 4.086 9 H 0.112 0.888 10 C -0.176 4.176 11 C 0.291 3.709 12 O -0.422 6.422 13 N -0.375 5.375 14 C 0.005 3.995 15 C -0.073 4.073 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.001 4.001 19 C -0.550 4.550 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.233 0.767 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.187 6.809 -20.377 21.517 hybrid contribution -1.058 0.058 1.030 1.478 sum -2.245 6.866 -19.347 20.651 Atomic orbital electron populations 1.21783 0.92519 1.02636 1.02962 1.22349 0.98225 1.01397 0.95140 0.87964 1.25048 0.76550 0.84568 0.88907 1.90407 1.52211 1.67659 1.21859 1.22945 1.01530 0.98895 0.98816 1.22526 1.02147 0.96525 0.93801 1.21677 0.98565 0.96292 0.92112 0.88818 1.21837 0.99814 1.02540 0.93417 1.20612 0.86426 0.79284 0.84610 1.90683 1.17734 1.49869 1.83954 1.46248 1.15935 1.62172 1.13097 1.21608 0.96812 0.97629 0.83417 1.20898 0.94323 0.96106 0.95967 1.21759 0.98400 0.99039 0.99203 1.21757 1.01474 0.95445 0.99733 1.19087 0.96060 0.95531 0.89471 1.21139 0.98057 1.39305 0.96540 0.92331 1.25013 0.95242 0.95617 0.98611 1.69949 1.19663 1.40552 1.23220 0.86709 0.81876 0.78213 0.81488 1.20331 1.21392 1.20328 0.90903 0.92066 0.92054 0.89105 0.87695 0.88959 0.91108 0.88607 0.88685 0.76734 0.91911 0.91891 0.95255 0.91461 0.93399 0.91458 0.93399 0.95252 0.96366 0.96377 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.00 37.16 0.30 -0.60 16 2 C -0.15 -1.10 3.36 -90.73 -0.30 -1.41 16 3 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.37 3.42 7.18 -28.10 -0.20 3.22 16 5 O -0.45 -5.59 17.99 6.00 0.11 -5.49 16 6 C -0.18 -1.41 6.72 -26.32 -0.18 -1.58 16 7 C -0.11 -0.94 5.80 -24.69 -0.14 -1.09 16 8 C -0.07 -0.55 2.39 -88.90 -0.21 -0.76 16 9 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 10 C -0.14 -1.09 3.87 -27.88 -0.11 -1.20 16 11 C 0.50 6.32 7.65 -10.99 -0.08 6.24 16 12 O -0.54 -8.85 14.79 5.55 0.08 -8.76 16 13 N -0.72 -9.29 4.96 -60.29 -0.30 -9.59 16 14 C 0.13 2.13 4.56 -4.04 -0.02 2.11 16 15 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 16 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 17 C -0.13 -2.11 8.05 37.15 0.30 -1.82 16 18 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 19 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 20 H 0.06 1.46 5.68 -52.48 -0.30 1.16 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 23 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.07 0.36 6.53 -51.93 -0.34 0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.94 7.37 -51.93 -0.38 0.56 16 33 H 0.07 0.56 7.96 -51.93 -0.41 0.14 16 34 H 0.10 0.62 6.85 -51.93 -0.36 0.26 16 35 H 0.09 0.60 7.35 -51.93 -0.38 0.21 16 36 H 0.40 4.22 6.16 -40.82 -0.25 3.97 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 40 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -31.36 365.35 -7.79 -39.15 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.99 Total: 0.14 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.91 Total: -11.47 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.44 Total: -34.95 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.19 Total: -14.25 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.36 -7.79 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.511 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds