Wall clock time and date at job start Tue Mar 31 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.97063 * 2 1 4 4 C 1.51444 * 110.01731 * 238.70725 * 2 1 3 5 5 O 1.20759 * 126.34260 * 60.26059 * 4 2 1 6 6 C 1.51844 * 107.31703 * 240.27571 * 4 2 1 7 7 C 1.54887 * 104.43492 * 23.79043 * 6 4 2 8 8 C 1.54283 * 109.98072 * 121.27306 * 2 1 3 9 9 H 1.09003 * 110.56461 * 214.98171 * 8 2 1 10 10 C 1.53002 * 110.57155 * 337.69652 * 8 2 1 11 11 C 1.50696 * 109.46923 * 185.00340 * 10 8 2 12 12 O 1.21284 * 120.00489 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99757 * 180.02562 * 11 10 8 14 14 C 1.46506 * 120.00264 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47317 * 59.99940 * 15 14 13 17 17 C 1.52992 * 109.46961 * 299.99478 * 15 14 13 18 18 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 15 14 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99861 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00522 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47376 * 59.99570 * 23 21 19 25 25 H 1.48496 * 109.47319 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46921 * 299.99580 * 23 21 19 27 27 H 1.08996 * 109.47126 * 298.72485 * 1 2 3 28 28 H 1.08996 * 109.46724 * 58.73431 * 1 2 3 29 29 H 1.09005 * 109.46789 * 178.72411 * 1 2 3 30 30 H 1.08998 * 110.44467 * 142.53290 * 6 4 2 31 31 H 1.08999 * 110.44160 * 264.93006 * 6 4 2 32 32 H 1.08992 * 110.83701 * 204.16381 * 7 6 4 33 33 H 1.09006 * 110.83047 * 80.58144 * 7 6 4 34 34 H 1.09000 * 109.46986 * 65.00492 * 10 8 2 35 35 H 1.08996 * 109.47407 * 305.00721 * 10 8 2 36 36 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 37 37 H 1.09000 * 109.47020 * 59.99522 * 14 13 11 38 38 H 1.09001 * 109.46379 * 299.99687 * 14 13 11 39 39 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 40 40 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.47261 * 59.99813 * 16 15 14 42 42 H 1.09001 * 109.47066 * 180.02562 * 17 15 14 43 43 H 1.08996 * 109.47747 * 300.00196 * 17 15 14 44 44 H 1.09002 * 109.47103 * 60.00608 * 17 15 14 45 45 H 1.08993 * 109.46955 * 300.00075 * 18 15 14 46 46 H 1.09000 * 109.47050 * 59.99904 * 18 15 14 47 47 H 0.96992 * 120.00310 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0485 -0.7391 -1.2159 5 8 1.8401 -0.4524 -2.3704 6 6 2.8785 -1.9076 -0.7147 7 6 2.3377 -2.1822 0.7104 8 6 2.0573 -0.7527 1.2393 9 1 2.9740 -0.2911 1.6064 10 6 0.9954 -0.7854 2.3404 11 6 1.5763 -1.4160 3.5797 12 8 2.7264 -1.8010 3.5823 13 7 0.8177 -1.5523 4.6853 14 6 1.3824 -2.1648 5.8904 15 6 0.3205 -2.1976 6.9914 16 6 -0.8806 -3.0181 6.5172 17 6 -0.1299 -0.7702 7.3081 18 6 0.9103 -2.8379 8.2497 19 6 -0.1354 -2.8697 9.3344 20 1 -1.1218 -2.4725 9.1453 21 6 0.1674 -3.4048 10.5684 22 7 1.3687 -3.8881 10.7988 23 14 -1.1290 -3.4449 11.9127 24 1 -2.2948 -4.2413 11.4526 25 1 -0.5567 -4.0662 13.1340 26 1 -1.5662 -2.0594 12.2201 27 1 -0.3633 0.4939 0.9012 28 1 -0.3632 0.5334 -0.8784 29 1 -0.3633 -1.0275 -0.0229 30 1 2.7322 -2.7797 -1.3520 31 1 3.9337 -1.6369 -0.6778 32 1 3.0901 -2.6809 1.3213 33 1 1.4191 -2.7677 0.6703 34 1 0.1395 -1.3696 2.0025 35 1 0.6748 0.2315 2.5663 36 1 -0.1021 -1.2441 4.6834 37 1 2.2379 -1.5800 6.2284 38 1 1.7037 -3.1816 5.6645 39 1 -1.3009 -2.5624 5.6207 40 1 -1.6369 -3.0418 7.3018 41 1 -0.5597 -4.0351 6.2916 42 1 -0.8861 -0.7935 8.0928 43 1 0.7258 -0.1857 7.6459 44 1 -0.5501 -0.3145 6.4116 45 1 1.2309 -3.8548 8.0237 46 1 1.7662 -2.2537 8.5876 47 1 1.5816 -4.2649 11.6668 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360410270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:59 Heat of formation + Delta-G solvation = -130.569508 kcal Electronic energy + Delta-G solvation = -24091.491894 eV Core-core repulsion = 20658.051058 eV Total energy + Delta-G solvation = -3433.440836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41318 -40.49114 -38.74327 -37.61351 -35.16636 -33.90333 -32.57847 -31.22633 -29.07057 -27.92071 -27.73800 -26.02162 -25.78222 -24.56627 -21.85940 -20.92435 -19.90944 -19.48911 -18.35306 -18.17592 -17.23900 -16.84796 -16.46520 -16.44872 -16.19772 -15.82598 -15.31993 -15.12727 -14.72833 -14.41859 -14.34267 -14.17448 -13.90892 -13.77999 -13.68077 -13.42053 -13.06186 -12.85965 -12.78335 -12.73632 -12.53269 -12.29767 -12.27970 -12.19856 -11.98401 -11.86558 -11.58577 -11.49130 -11.37193 -11.07669 -10.86134 -10.61839 -10.49540 -10.35513 -9.93415 -8.12835 -6.20649 0.91174 1.43441 1.45255 1.52459 1.81863 2.34173 2.47040 3.13915 3.21571 3.48606 3.68883 3.85107 4.00903 4.12714 4.14026 4.21331 4.27178 4.28924 4.39061 4.53040 4.62401 4.65679 4.73908 4.77142 4.81766 4.86209 4.92549 4.94938 5.01016 5.07641 5.12145 5.16187 5.16435 5.25932 5.36235 5.44002 5.46537 5.53444 5.53530 5.57910 5.64149 5.83839 5.91894 6.32066 6.48526 6.73882 6.95008 7.43454 7.47305 8.99458 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.042131 B = 0.002535 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.432002 B =11043.477819 C =11359.701634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 H 0.113 0.887 4 C 0.375 3.625 5 O -0.486 6.486 6 C -0.182 4.182 7 C -0.112 4.112 8 C -0.065 4.065 9 H 0.081 0.919 10 C -0.126 4.126 11 C 0.502 3.498 12 O -0.586 6.586 13 N -0.713 5.713 14 C 0.143 3.857 15 C -0.064 4.064 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.038 3.962 19 C -0.513 4.513 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.958 3.042 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.266 1.266 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.413 0.587 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.074 0.926 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 8.545 -21.058 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 H 0.131 0.869 4 C 0.253 3.747 5 O -0.362 6.362 6 C -0.219 4.219 7 C -0.149 4.149 8 C -0.084 4.084 9 H 0.099 0.901 10 C -0.165 4.165 11 C 0.291 3.709 12 O -0.467 6.467 13 N -0.366 5.366 14 C 0.018 3.982 15 C -0.065 4.065 16 C -0.179 4.179 17 C -0.179 4.179 18 C 0.001 3.999 19 C -0.551 4.551 20 H 0.091 0.909 21 C -0.203 4.203 22 N -0.581 5.581 23 Si 0.783 3.217 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.191 1.191 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.251 0.749 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.007 8.345 -21.524 23.430 hybrid contribution -0.106 -0.436 1.350 1.422 sum -4.114 7.909 -20.174 22.056 Atomic orbital electron populations 1.21842 0.91252 1.03146 1.03818 1.22282 0.99134 1.01393 0.93310 0.86891 1.25380 0.75791 0.84702 0.88817 1.90399 1.53680 1.68742 1.23357 1.22946 1.01758 0.98763 0.98448 1.22479 1.01900 0.96880 0.93668 1.21616 0.98353 0.95889 0.92517 0.90058 1.21904 1.00019 1.04135 0.90492 1.21466 0.85774 0.78293 0.85401 1.90684 1.19839 1.51504 1.84649 1.46039 1.16703 1.61970 1.11899 1.21120 0.95816 0.96546 0.84688 1.20692 0.95055 0.97074 0.93662 1.21693 0.97042 0.98508 1.00611 1.21692 1.00692 0.94118 1.01368 1.18986 0.94969 0.93631 0.92338 1.21573 0.98806 1.37923 0.96789 0.90902 1.25954 0.97254 0.95593 1.01487 1.70112 1.22002 1.42202 1.23746 0.85609 0.79253 0.78713 0.78130 1.19129 1.21836 1.19112 0.88687 0.92693 0.91674 0.88643 0.87019 0.91154 0.90255 0.85966 0.85641 0.74858 0.93998 0.93952 0.90745 0.92813 0.94624 0.92807 0.94628 0.90730 0.99737 0.99761 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.00 71.98 0.58 -0.70 16 2 C -0.14 -1.67 3.36 -10.87 -0.04 -1.70 16 3 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.38 6.32 7.18 29.70 0.21 6.53 16 5 O -0.49 -11.75 17.99 -1.45 -0.03 -11.77 16 6 C -0.18 -2.58 6.72 30.86 0.21 -2.37 16 7 C -0.11 -1.72 5.80 31.92 0.19 -1.54 16 8 C -0.06 -0.89 2.39 -9.68 -0.02 -0.91 16 9 H 0.08 1.36 7.89 -2.39 -0.02 1.34 16 10 C -0.13 -1.51 3.87 29.85 0.12 -1.40 16 11 C 0.50 11.44 7.65 87.66 0.67 12.11 16 12 O -0.59 -18.83 14.79 -3.04 -0.04 -18.88 16 13 N -0.71 -16.43 4.96 -463.05 -2.30 -18.73 16 14 C 0.14 4.74 4.56 86.38 0.39 5.13 16 15 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 16 C -0.12 -3.79 8.05 71.98 0.58 -3.21 16 17 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 18 C 0.04 1.91 4.04 29.85 0.12 2.03 16 19 C -0.51 -26.97 7.65 25.60 0.20 -26.77 16 20 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 21 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 22 N -0.94 -56.73 13.29 21.45 0.28 -56.44 16 23 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 H 0.09 0.44 6.53 -2.39 -0.02 0.42 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.55 7.67 -2.38 -0.02 0.53 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.43 7.37 -2.39 -0.02 1.41 16 33 H 0.08 1.08 7.96 -2.38 -0.02 1.06 16 34 H 0.12 0.93 6.85 -2.39 -0.02 0.91 16 35 H 0.13 0.85 7.35 -2.39 -0.02 0.84 16 36 H 0.41 6.81 6.16 -92.71 -0.57 6.24 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 40 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 41 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 45 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 47 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -72.14 365.35 4.54 -67.61 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.38 Total: 11.45 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 4.21 Total: -18.22 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.01 Total: -75.17 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.07 Total: -30.65 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.14 4.54 -67.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.962 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds