Wall clock time and date at job start Tue Mar 31 2020 07:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.00289 * 2 1 4 4 C 1.51447 * 109.98613 * 121.29172 * 2 1 3 5 5 O 1.20763 * 126.34235 * 299.03088 * 4 2 1 6 6 C 1.51845 * 107.31743 * 118.99165 * 4 2 1 7 7 C 1.54884 * 104.43102 * 23.79003 * 6 4 2 8 8 C 1.54274 * 109.98405 * 238.71055 * 2 1 3 9 9 H 1.09002 * 110.69703 * 336.15374 * 8 2 1 10 10 C 1.52997 * 110.57122 * 98.96154 * 8 2 1 11 11 C 1.50699 * 109.47265 * 180.78382 * 10 8 2 12 12 O 1.21278 * 120.00240 * 359.97438 * 11 10 8 13 13 N 1.34782 * 119.99756 * 180.02562 * 11 10 8 14 14 C 1.46510 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.46966 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 59.99937 * 15 14 13 17 17 C 1.53006 * 109.47223 * 299.99649 * 15 14 13 18 18 C 1.52999 * 109.46961 * 180.02562 * 15 14 13 19 19 C 1.50701 * 109.47274 * 179.97438 * 18 15 14 20 20 H 1.07999 * 119.99742 * 359.97438 * 19 18 15 21 21 C 1.37878 * 120.00001 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99833 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00186 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46982 * 89.99930 * 23 21 19 25 25 H 1.48496 * 109.47225 * 209.99979 * 23 21 19 26 26 H 1.48502 * 109.47022 * 330.00101 * 23 21 19 27 27 H 1.09004 * 109.46974 * 181.29024 * 1 2 3 28 28 H 1.09006 * 109.47460 * 301.28871 * 1 2 3 29 29 H 1.09001 * 109.47335 * 61.28940 * 1 2 3 30 30 H 1.08998 * 110.44076 * 265.05520 * 6 4 2 31 31 H 1.09000 * 110.43871 * 142.53186 * 6 4 2 32 32 H 1.09002 * 110.83384 * 204.15989 * 7 6 4 33 33 H 1.09009 * 111.00311 * 80.66613 * 7 6 4 34 34 H 1.09000 * 109.47140 * 60.78130 * 10 8 2 35 35 H 1.09002 * 109.47497 * 300.78506 * 10 8 2 36 36 H 0.96998 * 120.00310 * 359.97438 * 13 11 10 37 37 H 1.08996 * 109.46804 * 59.99451 * 14 13 11 38 38 H 1.09002 * 109.46956 * 299.99706 * 14 13 11 39 39 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 40 40 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 41 41 H 1.09004 * 109.47261 * 179.97438 * 16 15 14 42 42 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 43 43 H 1.09000 * 109.47050 * 300.00346 * 17 15 14 44 44 H 1.09001 * 109.47002 * 60.00080 * 17 15 14 45 45 H 1.09002 * 109.46716 * 299.99630 * 18 15 14 46 46 H 1.09000 * 109.47486 * 59.99547 * 18 15 14 47 47 H 0.96997 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0476 -0.7392 1.2162 5 8 1.8486 -0.4456 2.3706 6 6 2.8624 -1.9187 0.7154 7 6 3.3051 -1.5045 -0.7099 8 6 2.0572 -0.7530 -1.2390 9 1 1.3124 -1.4588 -1.6066 10 6 2.4506 0.2333 -2.3404 11 6 2.9432 -0.5280 -3.5440 12 8 2.9769 -1.7401 -3.5229 13 7 3.3475 0.1383 -4.6437 14 6 3.8269 -0.6018 -5.8137 15 6 4.2202 0.3845 -6.9151 16 6 5.3305 1.3044 -6.4034 17 6 3.0024 1.2240 -7.3066 18 6 4.7203 -0.3884 -8.1371 19 6 5.1071 0.5831 -9.2223 20 1 5.0059 1.6456 -9.0570 21 6 5.5901 0.1156 -10.4261 22 7 5.9272 0.9634 -11.3733 23 14 5.7645 -1.7221 -10.7122 24 1 4.5060 -2.2540 -11.2940 25 1 6.8881 -1.9727 -11.6501 26 1 6.0378 -2.4006 -9.4198 27 1 -0.3633 -1.0275 0.0231 28 1 -0.3634 0.5337 0.8782 29 1 -0.3634 0.4937 -0.9013 30 1 2.2470 -2.8175 0.6768 31 1 3.7320 -2.0786 1.3529 32 1 3.5169 -2.3823 -1.3204 33 1 4.1701 -0.8421 -0.6733 34 1 3.2420 0.8883 -1.9759 35 1 1.5833 0.8318 -2.6191 36 1 3.3209 1.1078 -4.6606 37 1 3.0358 -1.2568 -6.1785 38 1 4.6942 -1.2002 -5.5347 39 1 6.1981 0.7064 -6.1245 40 1 4.9738 1.8550 -5.5329 41 1 5.6110 2.0069 -7.1883 42 1 3.2825 1.9264 -8.0916 43 1 2.2114 0.5687 -7.6712 44 1 2.6456 1.7746 -6.4362 45 1 5.5878 -0.9867 -7.8585 46 1 3.9290 -1.0435 -8.5016 47 1 6.2667 0.6345 -12.2203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:05 Heat of formation + Delta-G solvation = -111.704541 kcal Electronic energy + Delta-G solvation = -24038.781688 eV Core-core repulsion = 20606.158898 eV Total energy + Delta-G solvation = -3432.622790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57404 -39.54449 -37.53958 -36.64503 -33.68244 -32.19114 -31.84664 -30.97195 -27.88365 -26.62011 -26.60381 -25.05897 -24.70860 -22.46701 -21.07592 -20.14255 -19.41026 -18.29329 -17.11024 -16.77561 -16.35538 -16.07734 -15.52157 -15.35274 -14.76927 -14.37241 -14.20033 -13.98656 -13.82143 -13.71582 -13.42589 -13.03180 -12.84153 -12.75446 -12.51938 -12.38158 -12.28594 -12.00246 -11.67532 -11.33875 -11.28014 -11.16765 -11.04451 -10.99995 -10.91658 -10.65366 -10.52858 -10.01011 -9.96576 -9.77980 -9.67386 -9.40919 -9.02684 -8.83729 -8.56344 -6.07068 -4.04529 1.60092 2.71959 3.28816 3.29493 3.37475 3.40993 3.75821 4.12931 4.33436 4.42260 4.42966 4.78857 4.83759 4.86741 4.95770 5.07781 5.11313 5.21211 5.25391 5.34716 5.37594 5.44135 5.48629 5.56109 5.59235 5.60127 5.63497 5.76284 5.95673 6.06054 6.06530 6.07652 6.14720 6.27040 6.44604 6.55147 6.65662 6.86432 6.97547 7.01304 7.16230 7.16481 7.32961 7.62980 7.76586 8.32882 8.49846 8.96813 9.55585 11.05646 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.002638 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.547128 B =10613.334181 C =10917.927223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.152 4.152 3 H 0.104 0.896 4 C 0.374 3.626 5 O -0.449 6.449 6 C -0.184 4.184 7 C -0.114 4.114 8 C -0.067 4.067 9 H 0.093 0.907 10 C -0.136 4.136 11 C 0.507 3.493 12 O -0.544 6.544 13 N -0.723 5.723 14 C 0.126 3.874 15 C -0.063 4.063 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.066 3.934 22 N -0.904 5.904 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 -0.898 21.388 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 H 0.122 0.878 4 C 0.249 3.751 5 O -0.321 6.321 6 C -0.222 4.222 7 C -0.151 4.151 8 C -0.086 4.086 9 H 0.112 0.888 10 C -0.176 4.176 11 C 0.293 3.707 12 O -0.422 6.422 13 N -0.374 5.374 14 C 0.003 3.997 15 C -0.064 4.064 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.135 4.135 22 N -0.543 5.543 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.418 -1.604 21.820 23.442 hybrid contribution 0.196 -0.463 -0.542 0.739 sum -8.222 -2.067 21.278 22.904 Atomic orbital electron populations 1.21686 0.92393 1.02643 1.02825 1.22382 0.98134 1.01527 0.95076 0.87788 1.25040 0.76048 0.85123 0.88916 1.90409 1.51887 1.67964 1.21861 1.22946 1.01412 0.98968 0.98842 1.22542 0.96953 1.01849 0.93776 1.21726 0.98441 0.96327 0.92133 0.88826 1.21744 1.02875 0.98987 0.93986 1.20553 0.77658 0.88354 0.84112 1.90675 1.54805 1.14019 1.82704 1.46216 1.65535 1.10647 1.15028 1.21619 0.98870 0.94647 0.84575 1.20686 0.95685 0.95232 0.94748 1.21770 0.97653 0.99522 0.99620 1.21777 0.96753 0.99915 1.00152 1.19593 0.95828 0.95963 0.92629 1.21075 1.42435 0.94462 0.96938 0.90410 1.25006 0.94987 0.97389 0.96086 1.69902 1.44633 1.34200 1.05539 0.86854 0.77883 0.86587 0.78414 1.20378 1.21500 1.18999 0.92171 0.91979 0.91282 0.87750 0.89106 0.88776 0.91118 0.88810 0.88720 0.76555 0.91912 0.91894 0.93433 0.95008 0.90892 0.90888 0.93438 0.95013 0.96386 0.96838 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.09 37.16 0.34 -0.55 16 2 C -0.15 -1.07 3.01 -90.74 -0.27 -1.34 16 3 H 0.10 0.64 7.83 -51.93 -0.41 0.23 16 4 C 0.37 3.35 7.18 -28.10 -0.20 3.15 16 5 O -0.45 -5.53 17.99 6.00 0.11 -5.42 16 6 C -0.18 -1.37 6.72 -26.32 -0.18 -1.55 16 7 C -0.11 -0.93 5.65 -24.69 -0.14 -1.07 16 8 C -0.07 -0.52 2.03 -88.91 -0.18 -0.70 16 9 H 0.09 0.81 7.74 -51.93 -0.40 0.41 16 10 C -0.14 -1.03 5.06 -27.89 -0.14 -1.17 16 11 C 0.51 6.03 7.62 -10.98 -0.08 5.94 16 12 O -0.54 -8.38 14.54 5.56 0.08 -8.30 16 13 N -0.72 -8.81 4.96 -60.29 -0.30 -9.11 16 14 C 0.13 1.96 4.56 -4.04 -0.02 1.94 16 15 C -0.06 -1.09 0.54 -154.51 -0.08 -1.18 16 16 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 17 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 18 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 19 C -0.51 -13.40 8.20 -34.44 -0.28 -13.68 16 20 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 21 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 22 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 23 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.95 7.11 -51.93 -0.37 0.58 16 33 H 0.07 0.55 8.02 -51.92 -0.42 0.13 16 34 H 0.09 0.57 8.10 -51.93 -0.42 0.14 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 4.05 6.16 -40.82 -0.25 3.79 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 41 H 0.07 1.37 6.62 -51.93 -0.34 1.02 16 42 H 0.07 1.37 6.61 -51.93 -0.34 1.02 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 45 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 46 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -31.58 366.35 -7.45 -39.04 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.14 Total: 0.06 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.83 Total: -12.21 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.47 Total: -35.22 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.19 Total: -13.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.58 -7.45 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.667 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds