Wall clock time and date at job start Tue Mar 31 2020 07:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.00289 * 2 1 4 4 C 1.51447 * 109.98613 * 121.29172 * 2 1 3 5 5 O 1.20763 * 126.34235 * 299.03088 * 4 2 1 6 6 C 1.51845 * 107.31743 * 118.99165 * 4 2 1 7 7 C 1.54884 * 104.43102 * 23.79003 * 6 4 2 8 8 C 1.54274 * 109.98405 * 238.71055 * 2 1 3 9 9 H 1.09002 * 110.69703 * 336.15374 * 8 2 1 10 10 C 1.52997 * 110.57122 * 98.96154 * 8 2 1 11 11 C 1.50699 * 109.47265 * 180.78382 * 10 8 2 12 12 O 1.21278 * 120.00240 * 359.97438 * 11 10 8 13 13 N 1.34782 * 119.99756 * 180.02562 * 11 10 8 14 14 C 1.46510 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.46966 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 59.99937 * 15 14 13 17 17 C 1.53006 * 109.47223 * 299.99649 * 15 14 13 18 18 C 1.52999 * 109.46961 * 180.02562 * 15 14 13 19 19 C 1.50701 * 109.47274 * 179.97438 * 18 15 14 20 20 H 1.07999 * 119.99742 * 359.97438 * 19 18 15 21 21 C 1.37878 * 120.00001 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99833 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00186 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46982 * 89.99930 * 23 21 19 25 25 H 1.48496 * 109.47225 * 209.99979 * 23 21 19 26 26 H 1.48502 * 109.47022 * 330.00101 * 23 21 19 27 27 H 1.09004 * 109.46974 * 181.29024 * 1 2 3 28 28 H 1.09006 * 109.47460 * 301.28871 * 1 2 3 29 29 H 1.09001 * 109.47335 * 61.28940 * 1 2 3 30 30 H 1.08998 * 110.44076 * 265.05520 * 6 4 2 31 31 H 1.09000 * 110.43871 * 142.53186 * 6 4 2 32 32 H 1.09002 * 110.83384 * 204.15989 * 7 6 4 33 33 H 1.09009 * 111.00311 * 80.66613 * 7 6 4 34 34 H 1.09000 * 109.47140 * 60.78130 * 10 8 2 35 35 H 1.09002 * 109.47497 * 300.78506 * 10 8 2 36 36 H 0.96998 * 120.00310 * 359.97438 * 13 11 10 37 37 H 1.08996 * 109.46804 * 59.99451 * 14 13 11 38 38 H 1.09002 * 109.46956 * 299.99706 * 14 13 11 39 39 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 40 40 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 41 41 H 1.09004 * 109.47261 * 179.97438 * 16 15 14 42 42 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 43 43 H 1.09000 * 109.47050 * 300.00346 * 17 15 14 44 44 H 1.09001 * 109.47002 * 60.00080 * 17 15 14 45 45 H 1.09002 * 109.46716 * 299.99630 * 18 15 14 46 46 H 1.09000 * 109.47486 * 59.99547 * 18 15 14 47 47 H 0.96997 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0476 -0.7392 1.2162 5 8 1.8486 -0.4456 2.3706 6 6 2.8624 -1.9187 0.7154 7 6 3.3051 -1.5045 -0.7099 8 6 2.0572 -0.7530 -1.2390 9 1 1.3124 -1.4588 -1.6066 10 6 2.4506 0.2333 -2.3404 11 6 2.9432 -0.5280 -3.5440 12 8 2.9769 -1.7401 -3.5229 13 7 3.3475 0.1383 -4.6437 14 6 3.8269 -0.6018 -5.8137 15 6 4.2202 0.3845 -6.9151 16 6 5.3305 1.3044 -6.4034 17 6 3.0024 1.2240 -7.3066 18 6 4.7203 -0.3884 -8.1371 19 6 5.1071 0.5831 -9.2223 20 1 5.0059 1.6456 -9.0570 21 6 5.5901 0.1156 -10.4261 22 7 5.9272 0.9634 -11.3733 23 14 5.7645 -1.7221 -10.7122 24 1 4.5060 -2.2540 -11.2940 25 1 6.8881 -1.9727 -11.6501 26 1 6.0378 -2.4006 -9.4198 27 1 -0.3633 -1.0275 0.0231 28 1 -0.3634 0.5337 0.8782 29 1 -0.3634 0.4937 -0.9013 30 1 2.2470 -2.8175 0.6768 31 1 3.7320 -2.0786 1.3529 32 1 3.5169 -2.3823 -1.3204 33 1 4.1701 -0.8421 -0.6733 34 1 3.2420 0.8883 -1.9759 35 1 1.5833 0.8318 -2.6191 36 1 3.3209 1.1078 -4.6606 37 1 3.0358 -1.2568 -6.1785 38 1 4.6942 -1.2002 -5.5347 39 1 6.1981 0.7064 -6.1245 40 1 4.9738 1.8550 -5.5329 41 1 5.6110 2.0069 -7.1883 42 1 3.2825 1.9264 -8.0916 43 1 2.2114 0.5687 -7.6712 44 1 2.6456 1.7746 -6.4362 45 1 5.5878 -0.9867 -7.8585 46 1 3.9290 -1.0435 -8.5016 47 1 6.2667 0.6345 -12.2203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360410272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:05 Heat of formation + Delta-G solvation = -130.992212 kcal Electronic energy + Delta-G solvation = -24039.618064 eV Core-core repulsion = 20606.158898 eV Total energy + Delta-G solvation = -3433.459166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33364 -40.49795 -38.77294 -37.50933 -35.12460 -33.95350 -32.42879 -31.71183 -29.69035 -27.95423 -27.74614 -25.81452 -25.46666 -24.13456 -21.88560 -21.02420 -20.06847 -19.67422 -18.89009 -17.90869 -17.17995 -16.80775 -16.52255 -16.39053 -16.03291 -15.55494 -15.35784 -15.25791 -14.79099 -14.71951 -14.38872 -14.17441 -14.12577 -13.98398 -13.65046 -13.35608 -13.10861 -12.91272 -12.82741 -12.67247 -12.53396 -12.28601 -12.27673 -12.13830 -11.92654 -11.76129 -11.61318 -11.50730 -11.48183 -11.22960 -10.90245 -10.70913 -10.70002 -10.30590 -9.91841 -8.22046 -6.21954 0.91343 1.35889 1.38864 1.48564 1.82376 2.35725 2.39288 3.13542 3.14356 3.50094 3.68165 3.83044 3.96669 4.09844 4.15172 4.20098 4.24015 4.28857 4.39618 4.53149 4.57377 4.62017 4.68279 4.75944 4.83728 4.86810 4.91259 4.98431 4.99975 5.04117 5.06604 5.08830 5.12435 5.26670 5.31383 5.33052 5.41438 5.43175 5.46387 5.55886 5.62811 5.72747 5.78770 6.38829 6.48773 6.73174 6.85455 7.40849 7.42841 8.93553 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.002638 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.547128 B =10613.334181 C =10917.927223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 H 0.122 0.878 4 C 0.374 3.626 5 O -0.487 6.487 6 C -0.181 4.181 7 C -0.112 4.112 8 C -0.063 4.063 9 H 0.083 0.917 10 C -0.128 4.128 11 C 0.506 3.494 12 O -0.582 6.582 13 N -0.716 5.716 14 C 0.140 3.860 15 C -0.058 4.058 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.005 4.005 19 C -0.500 4.500 20 H 0.052 0.948 21 C 0.004 3.996 22 N -0.952 5.952 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.252 1.252 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.412 0.588 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -0.777 23.253 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.140 0.860 4 C 0.252 3.748 5 O -0.362 6.362 6 C -0.219 4.219 7 C -0.150 4.150 8 C -0.082 4.082 9 H 0.102 0.898 10 C -0.167 4.167 11 C 0.294 3.706 12 O -0.462 6.462 13 N -0.369 5.369 14 C 0.016 3.984 15 C -0.059 4.059 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.043 4.043 19 C -0.539 4.539 20 H 0.070 0.930 21 C -0.192 4.192 22 N -0.594 5.594 23 Si 0.759 3.241 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.175 1.175 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.250 0.750 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.380 -1.469 23.698 25.529 hybrid contribution 0.481 -0.470 -1.093 1.284 sum -8.899 -1.939 22.604 24.371 Atomic orbital electron populations 1.21709 0.91840 1.02646 1.03406 1.22320 0.98450 1.01950 0.93377 0.86007 1.25389 0.75298 0.85275 0.88822 1.90402 1.53433 1.69008 1.23402 1.22948 1.01557 0.98849 0.98542 1.22486 0.97595 1.01302 0.93591 1.21664 0.97839 0.96287 0.92445 0.89816 1.21790 1.04652 0.98716 0.91537 1.21306 0.76522 0.88093 0.84692 1.90677 1.56185 1.16006 1.83356 1.46062 1.65498 1.11148 1.14160 1.21187 0.98162 0.93944 0.85145 1.20546 0.96374 0.95405 0.93543 1.21699 0.97310 0.98899 1.00157 1.21705 0.96107 0.99330 1.00951 1.19583 0.95633 0.95464 0.93608 1.21383 1.40508 0.94244 0.97719 0.92951 1.25844 0.95407 1.01708 0.96227 1.70042 1.46816 1.36255 1.06241 0.85900 0.77894 0.81544 0.78754 1.19752 1.21571 1.17531 0.92514 0.92466 0.89658 0.87051 0.88716 0.90827 0.90450 0.86259 0.85944 0.75000 0.92992 0.93033 0.93854 0.90927 0.93871 0.93875 0.93810 0.90919 0.96845 0.96992 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.09 71.98 0.65 -0.76 16 2 C -0.14 -1.56 3.01 -10.87 -0.03 -1.60 16 3 H 0.12 0.98 7.83 -2.39 -0.02 0.96 16 4 C 0.37 6.09 7.18 29.71 0.21 6.30 16 5 O -0.49 -11.55 17.99 -1.46 -0.03 -11.58 16 6 C -0.18 -2.45 6.72 30.86 0.21 -2.24 16 7 C -0.11 -1.62 5.65 31.92 0.18 -1.44 16 8 C -0.06 -0.79 2.03 -9.68 -0.02 -0.81 16 9 H 0.08 1.25 7.74 -2.39 -0.02 1.24 16 10 C -0.13 -1.37 5.06 29.85 0.15 -1.22 16 11 C 0.51 10.41 7.62 87.66 0.67 11.07 16 12 O -0.58 -16.88 14.54 -3.02 -0.04 -16.92 16 13 N -0.72 -14.96 4.96 -463.05 -2.30 -17.25 16 14 C 0.14 4.07 4.56 86.37 0.39 4.47 16 15 C -0.06 -1.94 0.54 -52.18 -0.03 -1.97 16 16 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 17 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 18 C 0.00 -0.22 3.11 29.85 0.09 -0.13 16 19 C -0.50 -26.68 8.20 25.60 0.21 -26.47 16 20 H 0.05 3.01 5.92 -2.91 -0.02 2.99 16 21 C 0.00 0.24 5.47 84.65 0.46 0.70 16 22 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 23 Si 0.93 43.92 27.47 68.60 1.88 45.80 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.41 7.11 -2.39 -0.02 1.39 16 33 H 0.08 1.01 8.02 -2.38 -0.02 0.99 16 34 H 0.12 0.78 8.10 -2.39 -0.02 0.76 16 35 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.41 6.39 6.16 -92.71 -0.57 5.82 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 41 H 0.04 1.60 6.62 -2.38 -0.02 1.58 16 42 H 0.04 1.60 6.61 -2.39 -0.02 1.58 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 45 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 46 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 47 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -70.97 366.35 4.45 -66.52 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.32 Total: 11.94 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.31 Total: -20.62 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.00 Total: -75.15 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.07 Total: -28.50 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -70.97 4.45 -66.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.467 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds