Wall clock time and date at job start Tue Mar 31 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49360 * 2 1 4 4 C 1.53234 * 109.48024 * 239.96417 * 2 1 3 5 5 C 1.51269 * 108.53660 * 185.39245 * 4 2 1 6 6 O 1.20752 * 120.85198 * 231.37452 * 5 4 2 7 7 C 1.51272 * 118.29721 * 51.34775 * 5 4 2 8 8 C 1.53230 * 108.53873 * 308.65184 * 7 5 4 9 9 C 1.52958 * 109.48042 * 120.03456 * 2 1 3 10 10 H 1.09003 * 109.41550 * 63.54155 * 9 2 1 11 11 C 1.50695 * 109.41593 * 303.68296 * 9 2 1 12 12 O 1.21285 * 119.99887 * 276.04627 * 11 9 2 13 13 N 1.34773 * 120.00264 * 95.76197 * 11 9 2 14 14 C 1.46500 * 120.00174 * 180.27370 * 13 11 9 15 15 C 1.53001 * 109.47019 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46922 * 300.00162 * 15 14 13 17 17 C 1.53001 * 109.47199 * 60.00181 * 15 14 13 18 18 C 1.53002 * 109.47123 * 180.02562 * 15 14 13 19 19 C 1.50697 * 109.47153 * 179.97438 * 18 15 14 20 20 H 1.08002 * 120.00017 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00000 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00034 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99793 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47104 * 90.00073 * 23 21 19 25 25 H 1.48506 * 109.47074 * 209.99650 * 23 21 19 26 26 H 1.48495 * 109.47296 * 330.00075 * 23 21 19 27 27 H 1.09002 * 109.47465 * 305.83411 * 1 2 3 28 28 H 1.09000 * 109.47146 * 65.83078 * 1 2 3 29 29 H 1.09000 * 109.47588 * 185.83317 * 1 2 3 30 30 H 1.08999 * 109.62427 * 305.10979 * 4 2 1 31 31 H 1.09008 * 109.62241 * 65.49052 * 4 2 1 32 32 H 1.08997 * 109.62283 * 68.36775 * 7 5 4 33 33 H 1.09003 * 109.62462 * 188.93918 * 7 5 4 34 34 H 1.08994 * 109.48441 * 294.64920 * 8 7 5 35 35 H 1.09001 * 109.47971 * 174.60566 * 8 7 5 36 36 H 0.97002 * 119.99510 * 0.28474 * 13 11 9 37 37 H 1.09002 * 109.47276 * 300.00449 * 14 13 11 38 38 H 1.09001 * 109.46951 * 60.00723 * 14 13 11 39 39 H 1.08999 * 109.47246 * 60.00611 * 16 15 14 40 40 H 1.09004 * 109.47199 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.47370 * 299.99958 * 16 15 14 42 42 H 1.08995 * 109.46820 * 59.99921 * 17 15 14 43 43 H 1.09004 * 109.46786 * 180.02562 * 17 15 14 44 44 H 1.08999 * 109.47009 * 299.99532 * 17 15 14 45 45 H 1.09002 * 109.46855 * 299.99771 * 18 15 14 46 46 H 1.09001 * 109.47268 * 59.99981 * 18 15 14 47 47 H 0.96991 * 119.99971 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7231 -1.2506 5 6 3.5475 -0.8284 -1.1634 6 8 4.2475 -0.4677 -2.0789 7 6 4.1547 -1.3965 0.1003 8 6 3.5670 -0.6490 1.3019 9 6 2.0401 -0.7218 1.2484 10 1 1.7291 -1.7660 1.2157 11 6 1.4640 -0.0659 2.4768 12 8 1.9976 0.9170 2.9461 13 7 0.3527 -0.5680 3.0504 14 6 -0.2107 0.0732 4.2411 15 6 -1.4597 -0.6891 4.6881 16 6 -2.4960 -0.6748 3.5624 17 6 -1.0841 -2.1353 5.0172 18 6 -2.0486 -0.0190 5.9312 19 6 -3.2791 -0.7695 6.3711 20 1 -3.6081 -1.6377 5.8194 21 6 -3.9844 -0.3482 7.4784 22 7 -5.0581 -1.0034 7.8626 23 14 -3.4150 1.1531 8.4329 24 1 -4.0552 2.3693 7.8706 25 1 -3.7981 1.0070 9.8602 26 1 -1.9390 1.2767 8.3267 27 1 -0.3634 0.6016 0.8331 28 1 -0.3633 0.4208 -0.9376 29 1 -0.3634 -1.0223 0.1044 30 1 1.6064 -1.7215 -1.2995 31 1 1.7615 -0.1581 -2.1400 32 1 3.9158 -2.4572 0.1764 33 1 5.2363 -1.2625 0.0790 34 1 3.8826 0.3938 1.2711 35 1 3.9208 -1.1090 2.2246 36 1 -0.0740 -1.3541 2.6750 37 1 0.5274 0.0627 5.0431 38 1 -0.4780 1.1036 4.0067 39 1 -2.0768 -1.1520 2.6766 40 1 -3.3860 -1.2175 3.8810 41 1 -2.7636 0.3555 3.3280 42 1 -0.3459 -2.1453 5.8190 43 1 -1.9741 -2.6784 5.3352 44 1 -0.6650 -2.6124 4.1313 45 1 -1.3105 -0.0289 6.7332 46 1 -2.3163 1.0112 5.6963 47 1 -5.5540 -0.7073 8.6418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360421540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:37 Heat of formation + Delta-G solvation = -113.512375 kcal Electronic energy + Delta-G solvation = -24699.006217 eV Core-core repulsion = 21266.305033 eV Total energy + Delta-G solvation = -3432.701184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82555 -39.49552 -37.55579 -36.50868 -33.75479 -32.89154 -32.12565 -29.88417 -27.88404 -27.38041 -26.60977 -26.19891 -23.34012 -22.42667 -21.52683 -20.23138 -19.59864 -18.33443 -17.16694 -16.79102 -16.15303 -15.99208 -15.57763 -15.39417 -14.98445 -14.53484 -14.36535 -14.06864 -13.65503 -13.53447 -13.29941 -13.03207 -12.77604 -12.66984 -12.61307 -12.37918 -12.31396 -12.28432 -11.74616 -11.40238 -11.30406 -11.20268 -11.13988 -11.04373 -10.96478 -10.65830 -10.53680 -10.01604 -9.90127 -9.76767 -9.75547 -9.43512 -9.03201 -8.85597 -8.56674 -6.07484 -4.04938 1.59339 2.65171 3.26099 3.29044 3.37383 3.41013 3.72204 4.18751 4.24463 4.41118 4.42741 4.57608 4.80354 4.85629 4.92039 5.03077 5.13193 5.16900 5.25036 5.27307 5.35079 5.40980 5.47947 5.51442 5.58481 5.61816 5.74159 5.80120 5.87894 5.95846 6.05384 6.07271 6.13840 6.25948 6.43008 6.54381 6.63901 6.85448 6.96864 7.00596 7.13004 7.16057 7.32521 7.60676 7.76007 8.29905 8.49342 8.96390 9.55272 11.05241 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003054 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.731623 B = 9166.103637 C = 9391.122576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 H 0.084 0.916 4 C -0.163 4.163 5 C 0.362 3.638 6 O -0.459 6.459 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.108 4.108 10 H 0.094 0.906 11 C 0.515 3.485 12 O -0.544 6.544 13 N -0.718 5.718 14 C 0.125 3.875 15 C -0.063 4.063 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 -2.841 -16.419 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 H 0.102 0.898 4 C -0.201 4.201 5 C 0.238 3.762 6 O -0.333 6.333 7 C -0.207 4.207 8 C -0.135 4.135 9 C -0.129 4.129 10 H 0.112 0.888 11 C 0.301 3.699 12 O -0.422 6.422 13 N -0.370 5.370 14 C 0.002 3.998 15 C -0.063 4.063 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.134 4.134 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.281 -1.936 -16.407 21.837 hybrid contribution -0.179 0.360 0.611 0.731 sum 14.101 -1.576 -15.796 21.233 Atomic orbital electron populations 1.21959 0.93502 1.02766 1.03016 1.21014 0.96871 0.99960 0.91291 0.89802 1.22402 0.94210 1.03550 0.99953 1.24926 0.91605 0.72788 0.86931 1.90416 1.65407 1.37690 1.39743 1.22340 1.02240 1.01884 0.94212 1.21361 0.92526 1.02225 0.97427 1.21455 0.96813 1.01118 0.93558 0.88759 1.20367 0.80514 0.84384 0.84644 1.90703 1.60633 1.26339 1.64500 1.46269 1.27717 1.32453 1.30543 1.21645 0.95567 0.96639 0.85999 1.20686 0.92451 0.95622 0.97550 1.21776 0.99701 1.01393 0.95694 1.21770 1.01945 0.95736 0.99107 1.19590 0.96711 0.95748 0.91934 1.21073 1.08210 1.13712 1.11932 0.90399 1.25000 0.94703 0.96594 0.97125 1.69897 1.17741 1.40398 1.26236 0.86862 0.79809 0.83784 0.79328 1.20373 1.21501 1.19001 0.91485 0.91839 0.91931 0.87963 0.88879 0.88129 0.88949 0.90089 0.90113 0.76511 0.91852 0.91863 0.94995 0.90896 0.93431 0.93414 0.90882 0.95037 0.96400 0.96846 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.63 37.16 0.32 -0.85 16 2 C -0.07 -0.56 2.29 -90.52 -0.21 -0.77 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.16 -1.07 5.45 -27.48 -0.15 -1.22 16 5 C 0.36 3.11 6.72 -28.48 -0.19 2.92 16 6 O -0.46 -5.68 17.89 6.01 0.11 -5.57 16 7 C -0.17 -1.13 6.17 -27.48 -0.17 -1.30 16 8 C -0.10 -0.79 4.83 -26.63 -0.13 -0.92 16 9 C -0.11 -0.89 1.99 -91.81 -0.18 -1.07 16 10 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 11 C 0.52 6.36 5.64 -10.99 -0.06 6.29 16 12 O -0.54 -9.02 16.37 5.55 0.09 -8.93 16 13 N -0.72 -8.68 4.48 -60.29 -0.27 -8.95 16 14 C 0.12 1.93 4.56 -4.04 -0.02 1.91 16 15 C -0.06 -1.07 0.54 -154.51 -0.08 -1.16 16 16 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 17 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 18 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 19 C -0.51 -13.33 8.20 -34.44 -0.28 -13.61 16 20 H 0.08 2.14 5.92 -52.49 -0.31 1.83 16 21 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 22 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 23 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 27 H 0.07 0.65 7.10 -51.93 -0.37 0.28 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.80 7.98 -51.93 -0.41 0.38 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 3.97 6.13 -40.82 -0.25 3.72 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 45 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 46 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.12 363.59 -7.40 -39.52 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.17 Total: -0.33 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.74 Total: -11.68 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.50 Total: -34.99 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.20 Total: -14.50 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.12 -7.40 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.988 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds