Wall clock time and date at job start Tue Mar 31 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49360 * 2 1 4 4 C 1.53234 * 109.48024 * 239.96417 * 2 1 3 5 5 C 1.51269 * 108.53660 * 185.39245 * 4 2 1 6 6 O 1.20752 * 120.85198 * 231.37452 * 5 4 2 7 7 C 1.51272 * 118.29721 * 51.34775 * 5 4 2 8 8 C 1.53230 * 108.53873 * 308.65184 * 7 5 4 9 9 C 1.52958 * 109.48042 * 120.03456 * 2 1 3 10 10 H 1.09003 * 109.41550 * 63.54155 * 9 2 1 11 11 C 1.50695 * 109.41593 * 303.68296 * 9 2 1 12 12 O 1.21285 * 119.99887 * 276.04627 * 11 9 2 13 13 N 1.34773 * 120.00264 * 95.76197 * 11 9 2 14 14 C 1.46500 * 120.00174 * 180.27370 * 13 11 9 15 15 C 1.53001 * 109.47019 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46922 * 300.00162 * 15 14 13 17 17 C 1.53001 * 109.47199 * 60.00181 * 15 14 13 18 18 C 1.53002 * 109.47123 * 180.02562 * 15 14 13 19 19 C 1.50697 * 109.47153 * 179.97438 * 18 15 14 20 20 H 1.08002 * 120.00017 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00000 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00034 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99793 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47104 * 90.00073 * 23 21 19 25 25 H 1.48506 * 109.47074 * 209.99650 * 23 21 19 26 26 H 1.48495 * 109.47296 * 330.00075 * 23 21 19 27 27 H 1.09002 * 109.47465 * 305.83411 * 1 2 3 28 28 H 1.09000 * 109.47146 * 65.83078 * 1 2 3 29 29 H 1.09000 * 109.47588 * 185.83317 * 1 2 3 30 30 H 1.08999 * 109.62427 * 305.10979 * 4 2 1 31 31 H 1.09008 * 109.62241 * 65.49052 * 4 2 1 32 32 H 1.08997 * 109.62283 * 68.36775 * 7 5 4 33 33 H 1.09003 * 109.62462 * 188.93918 * 7 5 4 34 34 H 1.08994 * 109.48441 * 294.64920 * 8 7 5 35 35 H 1.09001 * 109.47971 * 174.60566 * 8 7 5 36 36 H 0.97002 * 119.99510 * 0.28474 * 13 11 9 37 37 H 1.09002 * 109.47276 * 300.00449 * 14 13 11 38 38 H 1.09001 * 109.46951 * 60.00723 * 14 13 11 39 39 H 1.08999 * 109.47246 * 60.00611 * 16 15 14 40 40 H 1.09004 * 109.47199 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.47370 * 299.99958 * 16 15 14 42 42 H 1.08995 * 109.46820 * 59.99921 * 17 15 14 43 43 H 1.09004 * 109.46786 * 180.02562 * 17 15 14 44 44 H 1.08999 * 109.47009 * 299.99532 * 17 15 14 45 45 H 1.09002 * 109.46855 * 299.99771 * 18 15 14 46 46 H 1.09001 * 109.47268 * 59.99981 * 18 15 14 47 47 H 0.96991 * 119.99971 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7231 -1.2506 5 6 3.5475 -0.8284 -1.1634 6 8 4.2475 -0.4677 -2.0789 7 6 4.1547 -1.3965 0.1003 8 6 3.5670 -0.6490 1.3019 9 6 2.0401 -0.7218 1.2484 10 1 1.7291 -1.7660 1.2157 11 6 1.4640 -0.0659 2.4768 12 8 1.9976 0.9170 2.9461 13 7 0.3527 -0.5680 3.0504 14 6 -0.2107 0.0732 4.2411 15 6 -1.4597 -0.6891 4.6881 16 6 -2.4960 -0.6748 3.5624 17 6 -1.0841 -2.1353 5.0172 18 6 -2.0486 -0.0190 5.9312 19 6 -3.2791 -0.7695 6.3711 20 1 -3.6081 -1.6377 5.8194 21 6 -3.9844 -0.3482 7.4784 22 7 -5.0581 -1.0034 7.8626 23 14 -3.4150 1.1531 8.4329 24 1 -4.0552 2.3693 7.8706 25 1 -3.7981 1.0070 9.8602 26 1 -1.9390 1.2767 8.3267 27 1 -0.3634 0.6016 0.8331 28 1 -0.3633 0.4208 -0.9376 29 1 -0.3634 -1.0223 0.1044 30 1 1.6064 -1.7215 -1.2995 31 1 1.7615 -0.1581 -2.1400 32 1 3.9158 -2.4572 0.1764 33 1 5.2363 -1.2625 0.0790 34 1 3.8826 0.3938 1.2711 35 1 3.9208 -1.1090 2.2246 36 1 -0.0740 -1.3541 2.6750 37 1 0.5274 0.0627 5.0431 38 1 -0.4780 1.1036 4.0067 39 1 -2.0768 -1.1520 2.6766 40 1 -3.3860 -1.2175 3.8810 41 1 -2.7636 0.3555 3.3280 42 1 -0.3459 -2.1453 5.8190 43 1 -1.9741 -2.6784 5.3352 44 1 -0.6650 -2.6124 4.1313 45 1 -1.3105 -0.0289 6.7332 46 1 -2.3163 1.0112 5.6963 47 1 -5.5540 -0.7073 8.6418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360421540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:37 Heat of formation + Delta-G solvation = -133.733137 kcal Electronic energy + Delta-G solvation = -24699.883055 eV Core-core repulsion = 21266.305033 eV Total energy + Delta-G solvation = -3433.578022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64069 -40.40674 -38.82204 -37.39870 -35.19122 -33.98862 -33.46331 -30.67601 -29.62678 -28.07239 -27.92245 -27.34475 -24.65716 -23.52715 -22.37996 -21.18745 -20.24994 -19.66754 -18.88677 -18.08107 -17.01905 -16.76585 -16.47875 -16.30101 -16.08134 -15.73022 -15.51020 -15.36806 -15.04165 -14.76058 -14.21852 -14.19432 -14.05821 -13.80489 -13.65021 -13.26453 -13.18832 -12.91438 -12.89211 -12.81016 -12.57227 -12.44751 -12.27619 -12.13808 -12.00446 -11.81584 -11.75172 -11.57825 -11.47843 -11.23901 -10.90202 -10.69940 -10.63722 -10.41143 -9.97808 -8.21992 -6.21596 0.94961 1.35403 1.38726 1.48069 1.68935 2.28155 2.39124 3.13780 3.14450 3.54858 3.63395 3.71931 3.94809 3.98915 4.10042 4.20158 4.21742 4.27020 4.34940 4.42104 4.52758 4.64462 4.68815 4.74121 4.76520 4.83463 4.89836 4.94560 4.99649 5.03650 5.08567 5.13624 5.15336 5.24535 5.27319 5.32843 5.40352 5.41041 5.44051 5.53746 5.60264 5.73813 5.79177 6.39032 6.50557 6.66748 6.85792 7.34515 7.41339 8.93567 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003054 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.731623 B = 9166.103637 C = 9391.122576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 H 0.058 0.942 4 C -0.155 4.155 5 C 0.362 3.638 6 O -0.505 6.505 7 C -0.161 4.161 8 C -0.095 4.095 9 C -0.100 4.100 10 H 0.135 0.865 11 C 0.516 3.484 12 O -0.591 6.591 13 N -0.706 5.706 14 C 0.138 3.862 15 C -0.057 4.057 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.005 4.005 19 C -0.499 4.499 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.951 5.951 23 Si 0.932 3.068 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.253 1.253 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.012 0.988 46 H 0.010 0.990 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.841 -4.020 -18.023 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 H 0.077 0.923 4 C -0.193 4.193 5 C 0.241 3.759 6 O -0.382 6.382 7 C -0.198 4.198 8 C -0.133 4.133 9 C -0.121 4.121 10 H 0.153 0.847 11 C 0.304 3.696 12 O -0.471 6.471 13 N -0.359 5.359 14 C 0.014 3.986 15 C -0.058 4.058 16 C -0.180 4.180 17 C -0.181 4.181 18 C -0.043 4.043 19 C -0.538 4.538 20 H 0.072 0.928 21 C -0.190 4.190 22 N -0.593 5.593 23 Si 0.757 3.243 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.177 1.177 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.155 0.845 31 H 0.110 0.890 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.439 -3.137 -18.027 23.940 hybrid contribution -0.542 0.704 1.076 1.396 sum 14.896 -2.433 -16.950 22.696 Atomic orbital electron populations 1.21967 0.92906 1.03853 1.02482 1.20927 0.97237 0.98814 0.91623 0.92331 1.22385 0.92669 1.05233 0.98978 1.25443 0.92543 0.71209 0.86743 1.90415 1.66498 1.39780 1.41490 1.22324 1.01873 1.03404 0.92222 1.21307 0.92608 1.01009 0.98366 1.21520 0.96481 1.02853 0.91251 0.84684 1.21075 0.79754 0.83618 0.85169 1.90694 1.61887 1.28537 1.65996 1.46070 1.27729 1.32666 1.29410 1.21231 0.94361 0.95976 0.87072 1.20543 0.93358 0.96020 0.95853 1.21703 0.98369 1.01160 0.96795 1.21703 1.00688 0.94791 1.00900 1.19579 0.95001 0.95488 0.94202 1.21382 1.08908 1.12682 1.10791 0.92752 1.25811 0.95021 0.99545 0.98647 1.70033 1.19481 1.42530 1.27248 0.85934 0.80015 0.80512 0.77820 1.19832 1.21569 1.17650 0.93776 0.91160 0.89524 0.84498 0.89038 0.84702 0.89279 0.92739 0.89654 0.74778 0.93020 0.93079 0.90732 0.93772 0.93911 0.93870 0.93737 0.90775 0.96936 0.97125 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.63 71.98 0.62 -1.18 16 2 C -0.07 -0.85 2.29 -10.73 -0.02 -0.87 16 3 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.16 -1.50 5.45 30.11 0.16 -1.34 16 5 C 0.36 5.39 6.72 29.46 0.20 5.58 16 6 O -0.51 -12.05 17.89 -1.43 -0.03 -12.08 16 7 C -0.16 -1.65 6.17 30.11 0.19 -1.47 16 8 C -0.09 -1.32 4.83 30.66 0.15 -1.17 16 9 C -0.10 -1.30 1.99 -11.57 -0.02 -1.33 16 10 H 0.14 0.73 8.10 -2.39 -0.02 0.71 16 11 C 0.52 11.51 5.64 87.66 0.49 12.00 16 12 O -0.59 -19.19 16.37 -3.05 -0.05 -19.24 16 13 N -0.71 -14.84 4.48 -463.06 -2.07 -16.92 16 14 C 0.14 4.03 4.56 86.38 0.39 4.43 16 15 C -0.06 -1.88 0.54 -52.18 -0.03 -1.91 16 16 C -0.12 -3.72 8.05 71.98 0.58 -3.14 16 17 C -0.12 -3.75 8.05 71.98 0.58 -3.17 16 18 C 0.00 -0.21 3.11 29.85 0.09 -0.12 16 19 C -0.50 -26.42 8.20 25.60 0.21 -26.21 16 20 H 0.05 3.08 5.92 -2.91 -0.02 3.07 16 21 C 0.01 0.34 5.47 84.66 0.46 0.80 16 22 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 23 Si 0.93 43.92 27.47 68.60 1.88 45.80 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 27 H 0.04 0.74 7.10 -2.39 -0.02 0.72 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.05 7.98 -2.39 -0.02 1.03 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 6.19 6.13 -92.71 -0.57 5.62 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.59 6.86 -2.39 -0.02 1.57 16 40 H 0.04 1.60 6.62 -2.38 -0.02 1.58 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.61 6.62 -2.38 -0.02 1.59 16 44 H 0.07 1.59 6.86 -2.39 -0.02 1.57 16 45 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 46 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 47 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.85 363.59 4.41 -69.44 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.32 Total: 9.65 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.05 Total: -19.08 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.78 Total: -74.50 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.08 Total: -31.32 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -73.85 4.41 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.288 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds