Wall clock time and date at job start Tue Mar 31 2020 08:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00181 * 2 1 4 4 C 1.53006 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46617 * 65.00262 * 4 3 2 6 6 C 1.46498 * 119.99668 * 90.00103 * 5 4 3 7 7 C 1.52997 * 109.47270 * 90.00176 * 6 5 4 8 8 H 1.09002 * 109.81072 * 305.52052 * 7 6 5 9 9 C 1.53022 * 109.64574 * 66.04925 * 7 6 5 10 10 C 1.50070 * 110.14859 * 169.12298 * 9 7 6 11 11 C 1.29444 * 124.07290 * 342.87281 * 10 9 7 12 12 C 1.50069 * 124.07734 * 0.46469 * 11 10 9 13 13 C 1.53020 * 110.14686 * 342.87071 * 12 11 10 14 14 C 1.34776 * 119.99885 * 269.99378 * 5 4 3 15 15 O 1.21278 * 119.99819 * 180.02562 * 14 5 4 16 16 C 1.50696 * 120.00098 * 0.02562 * 14 5 4 17 17 C 1.52995 * 109.47240 * 179.97438 * 16 14 5 18 18 C 1.50706 * 109.47449 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00327 * 180.02562 * 18 17 16 21 21 N 1.31505 * 120.00267 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99746 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47235 * 90.00199 * 22 20 18 24 24 H 1.48503 * 109.47243 * 210.00308 * 22 20 18 25 25 H 1.48502 * 109.47491 * 329.99967 * 22 20 18 26 26 H 1.08999 * 109.47039 * 299.99888 * 1 2 3 27 27 H 1.08996 * 109.46411 * 59.99902 * 1 2 3 28 28 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47059 * 60.00225 * 3 2 1 30 30 H 1.08994 * 109.47039 * 300.00091 * 3 2 1 31 31 H 1.08998 * 109.47225 * 305.00737 * 4 3 2 32 32 H 1.08999 * 109.47231 * 184.99719 * 4 3 2 33 33 H 1.08997 * 109.47183 * 329.99614 * 6 5 4 34 34 H 1.09006 * 109.46655 * 209.99557 * 6 5 4 35 35 H 1.08995 * 109.36026 * 289.32814 * 9 7 6 36 36 H 1.08996 * 109.35863 * 48.91676 * 9 7 6 37 37 H 1.08001 * 117.96413 * 162.84552 * 10 9 7 38 38 H 1.07997 * 117.96092 * 180.44789 * 11 10 9 39 39 H 1.09003 * 109.35854 * 222.66652 * 12 11 10 40 40 H 1.08998 * 109.24890 * 103.00770 * 12 11 10 41 41 H 1.08998 * 109.64736 * 289.75406 * 13 12 11 42 42 H 1.09006 * 109.64414 * 169.11906 * 13 12 11 43 43 H 1.08997 * 109.47533 * 300.00260 * 16 14 5 44 44 H 1.09007 * 109.47083 * 59.99994 * 16 14 5 45 45 H 1.09003 * 109.47291 * 299.99832 * 17 16 14 46 46 H 1.08999 * 109.47390 * 60.00290 * 17 16 14 47 47 H 0.97000 * 120.00501 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.2883 1.3998 -2.4130 7 6 5.7684 1.7860 -2.3814 8 1 6.0075 2.2550 -1.4269 9 6 6.6303 0.5358 -2.5704 10 6 8.0605 0.9248 -2.8061 11 6 8.4411 2.1117 -3.1552 12 6 7.5065 3.2673 -3.3633 13 6 6.0713 2.7617 -3.5255 14 6 4.0959 -0.7760 -1.3333 15 8 4.4615 -1.2898 -2.3692 16 6 3.7750 -1.6359 -0.1380 17 6 3.9905 -3.1077 -0.4959 18 6 3.6689 -3.9677 0.6992 19 1 3.3438 -3.5101 1.6219 20 6 3.7908 -5.3384 0.6150 21 7 3.5107 -6.0888 1.6580 22 14 4.3539 -6.1297 -0.9806 23 1 5.8342 -6.2472 -0.9796 24 1 3.7502 -7.4810 -1.1031 25 1 3.9247 -5.2902 -2.1280 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8509 0.5684 0.8426 32 1 3.9786 2.1765 0.0902 33 1 3.6768 2.3017 -2.3863 34 1 4.0771 0.8446 -3.3270 35 1 6.5674 -0.0850 -1.6767 36 1 6.2638 -0.0296 -3.4271 37 1 8.8193 0.1674 -2.6760 38 1 9.4970 2.2810 -3.3058 39 1 7.8008 3.8131 -4.2597 40 1 7.5599 3.9324 -2.5014 41 1 5.9696 2.2482 -4.4816 42 1 5.3794 3.6029 -3.4826 43 1 4.4280 -1.3638 0.6912 44 1 2.7357 -1.4813 0.1522 45 1 3.3371 -3.3795 -1.3249 46 1 5.0296 -3.2626 -0.7863 47 1 3.5968 -7.0532 1.5990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360450374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:16 Heat of formation + Delta-G solvation = -83.443282 kcal Electronic energy + Delta-G solvation = -25062.857799 eV Core-core repulsion = 21631.460509 eV Total energy + Delta-G solvation = -3431.397290 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99958 -38.29240 -37.65966 -35.28539 -33.40623 -32.21618 -31.01115 -30.72945 -29.38226 -26.88955 -26.27536 -24.96679 -23.15074 -22.86991 -21.51312 -20.43102 -18.44433 -17.92952 -17.07785 -16.64636 -16.33521 -16.07424 -15.75536 -15.46153 -15.06228 -14.44954 -14.08032 -14.00728 -13.60769 -13.42225 -13.16026 -12.94081 -12.63845 -12.59174 -12.44029 -12.38091 -12.04680 -11.88582 -11.80427 -11.52625 -11.30997 -11.09517 -10.78246 -10.72885 -10.57596 -10.19484 -9.89591 -9.84217 -9.66459 -9.63149 -9.08258 -8.99684 -8.90949 -8.42717 -8.35771 -5.93915 -3.90807 2.30626 3.27445 3.30154 3.43810 3.49972 3.62311 3.80730 4.59219 4.63190 4.63911 4.78393 4.97260 5.03012 5.05862 5.21206 5.28352 5.31554 5.32329 5.38555 5.40501 5.42090 5.45873 5.50937 5.51947 5.66661 5.72408 5.74450 5.81614 5.82945 5.92863 5.99502 6.15968 6.22537 6.29620 6.43585 6.53403 6.65826 6.79748 6.99312 7.01562 7.22330 7.53405 7.61010 7.76286 7.91752 8.62280 8.81799 9.11210 9.70253 11.19250 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.004939 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.455075 B = 5667.809446 C = 7410.040258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.041 3.959 4 C 0.112 3.888 5 N -0.620 5.620 6 C 0.120 3.880 7 C -0.100 4.100 8 H 0.070 0.930 9 C -0.083 4.083 10 C -0.141 4.141 11 C -0.175 4.175 12 C -0.085 4.085 13 C -0.113 4.113 14 C 0.522 3.478 15 O -0.540 6.540 16 C -0.128 4.128 17 C 0.004 3.996 18 C -0.517 4.517 19 H 0.072 0.928 20 C 0.068 3.932 21 N -0.907 5.907 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.261 1.261 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.021 0.979 46 H 0.014 0.986 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 22.995 -6.576 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.037 4.037 4 C -0.012 4.012 5 N -0.355 5.355 6 C -0.003 4.003 7 C -0.120 4.120 8 H 0.088 0.912 9 C -0.120 4.120 10 C -0.159 4.159 11 C -0.193 4.193 12 C -0.122 4.122 13 C -0.151 4.151 14 C 0.314 3.686 15 O -0.416 6.416 16 C -0.167 4.167 17 C -0.034 4.034 18 C -0.555 4.555 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.546 5.546 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.185 1.185 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.260 22.340 -7.079 23.469 hybrid contribution 0.168 -0.211 -0.626 0.681 sum 1.428 22.129 -7.704 23.475 Atomic orbital electron populations 1.22740 0.81363 1.03200 0.99170 1.88039 1.19465 1.26451 1.95238 1.23045 0.94709 0.85935 1.00057 1.21606 0.92056 0.99524 0.87974 1.48021 1.68599 1.06590 1.12262 1.21435 0.94193 0.94410 0.90267 1.21614 0.95351 0.96216 0.98792 0.91151 1.20527 0.91215 0.97012 1.03247 1.22241 0.97956 0.96899 0.98770 1.21951 0.99140 0.95126 1.03115 1.20380 0.94018 0.96426 1.01393 1.21599 0.96116 0.98532 0.98861 1.21470 0.74893 0.81286 0.90997 1.90616 1.46235 1.72700 1.32095 1.21859 1.04180 0.96596 0.94040 1.19343 0.96856 0.89946 0.97275 1.21144 1.45073 0.91100 0.98146 0.90996 1.24957 0.94857 0.97331 0.96136 1.69913 1.49948 1.05058 1.29725 0.86825 0.79157 0.78452 0.85289 1.20374 1.21589 1.18539 0.94335 0.94637 0.89239 0.92610 0.93476 0.88848 0.89380 0.91358 0.90021 0.91001 0.89705 0.88248 0.88481 0.91448 0.91321 0.91591 0.91807 0.90629 0.87100 0.96083 0.96793 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.37 -5.32 7.42 -35.23 -0.26 -5.58 16 3 C 0.04 0.43 6.28 37.16 0.23 0.66 16 4 C 0.11 1.22 5.78 -4.04 -0.02 1.20 16 5 N -0.62 -8.69 2.39 -173.68 -0.41 -9.10 16 6 C 0.12 1.43 4.99 -4.04 -0.02 1.41 16 7 C -0.10 -1.12 2.45 -90.40 -0.22 -1.34 16 8 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 9 C -0.08 -1.17 4.02 -28.18 -0.11 -1.28 16 10 C -0.14 -1.77 9.80 -35.90 -0.35 -2.12 16 11 C -0.18 -1.88 9.80 -35.90 -0.35 -2.23 16 12 C -0.09 -0.76 6.11 -28.18 -0.17 -0.93 16 13 C -0.11 -1.05 5.31 -26.52 -0.14 -1.19 16 14 C 0.52 9.89 6.17 -10.99 -0.07 9.82 16 15 O -0.54 -11.93 13.59 5.56 0.08 -11.86 16 16 C -0.13 -2.66 4.12 -27.89 -0.12 -2.78 16 17 C 0.00 0.10 3.33 -27.88 -0.09 0.00 16 18 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 19 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 22 Si 0.88 23.21 27.47 -169.99 -4.67 18.54 16 23 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.26 -6.92 6.54 56.52 0.37 -6.55 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 1.10 6.44 -51.93 -0.33 0.77 16 32 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.08 1.14 7.37 -51.93 -0.38 0.76 16 35 H 0.07 1.18 6.99 -51.93 -0.36 0.82 16 36 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16 37 H 0.10 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.10 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.49 7.40 -51.93 -0.38 1.10 16 44 H 0.11 2.29 5.12 -51.92 -0.27 2.03 16 45 H 0.02 0.57 7.16 -51.93 -0.37 0.20 16 46 H 0.01 0.37 7.53 -51.93 -0.39 -0.02 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -34.54 365.19 -8.12 -42.66 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.37 Total: -1.37 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.75 Total: -10.91 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.36 Total: -36.98 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.19 Total: -17.44 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.67 Total: 18.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.54 -8.12 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360450374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.787 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds