Wall clock time and date at job start Tue Mar 31 2020 08:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00181 * 2 1 4 4 C 1.53006 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46617 * 65.00262 * 4 3 2 6 6 C 1.46498 * 119.99668 * 90.00103 * 5 4 3 7 7 C 1.52997 * 109.47270 * 90.00176 * 6 5 4 8 8 H 1.09002 * 109.81072 * 305.52052 * 7 6 5 9 9 C 1.53022 * 109.64574 * 66.04925 * 7 6 5 10 10 C 1.50070 * 110.14859 * 169.12298 * 9 7 6 11 11 C 1.29444 * 124.07290 * 342.87281 * 10 9 7 12 12 C 1.50069 * 124.07734 * 0.46469 * 11 10 9 13 13 C 1.53020 * 110.14686 * 342.87071 * 12 11 10 14 14 C 1.34776 * 119.99885 * 269.99378 * 5 4 3 15 15 O 1.21278 * 119.99819 * 180.02562 * 14 5 4 16 16 C 1.50696 * 120.00098 * 0.02562 * 14 5 4 17 17 C 1.52995 * 109.47240 * 179.97438 * 16 14 5 18 18 C 1.50706 * 109.47449 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00327 * 180.02562 * 18 17 16 21 21 N 1.31505 * 120.00267 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99746 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47235 * 90.00199 * 22 20 18 24 24 H 1.48503 * 109.47243 * 210.00308 * 22 20 18 25 25 H 1.48502 * 109.47491 * 329.99967 * 22 20 18 26 26 H 1.08999 * 109.47039 * 299.99888 * 1 2 3 27 27 H 1.08996 * 109.46411 * 59.99902 * 1 2 3 28 28 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47059 * 60.00225 * 3 2 1 30 30 H 1.08994 * 109.47039 * 300.00091 * 3 2 1 31 31 H 1.08998 * 109.47225 * 305.00737 * 4 3 2 32 32 H 1.08999 * 109.47231 * 184.99719 * 4 3 2 33 33 H 1.08997 * 109.47183 * 329.99614 * 6 5 4 34 34 H 1.09006 * 109.46655 * 209.99557 * 6 5 4 35 35 H 1.08995 * 109.36026 * 289.32814 * 9 7 6 36 36 H 1.08996 * 109.35863 * 48.91676 * 9 7 6 37 37 H 1.08001 * 117.96413 * 162.84552 * 10 9 7 38 38 H 1.07997 * 117.96092 * 180.44789 * 11 10 9 39 39 H 1.09003 * 109.35854 * 222.66652 * 12 11 10 40 40 H 1.08998 * 109.24890 * 103.00770 * 12 11 10 41 41 H 1.08998 * 109.64736 * 289.75406 * 13 12 11 42 42 H 1.09006 * 109.64414 * 169.11906 * 13 12 11 43 43 H 1.08997 * 109.47533 * 300.00260 * 16 14 5 44 44 H 1.09007 * 109.47083 * 59.99994 * 16 14 5 45 45 H 1.09003 * 109.47291 * 299.99832 * 17 16 14 46 46 H 1.08999 * 109.47390 * 60.00290 * 17 16 14 47 47 H 0.97000 * 120.00501 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.2883 1.3998 -2.4130 7 6 5.7684 1.7860 -2.3814 8 1 6.0075 2.2550 -1.4269 9 6 6.6303 0.5358 -2.5704 10 6 8.0605 0.9248 -2.8061 11 6 8.4411 2.1117 -3.1552 12 6 7.5065 3.2673 -3.3633 13 6 6.0713 2.7617 -3.5255 14 6 4.0959 -0.7760 -1.3333 15 8 4.4615 -1.2898 -2.3692 16 6 3.7750 -1.6359 -0.1380 17 6 3.9905 -3.1077 -0.4959 18 6 3.6689 -3.9677 0.6992 19 1 3.3438 -3.5101 1.6219 20 6 3.7908 -5.3384 0.6150 21 7 3.5107 -6.0888 1.6580 22 14 4.3539 -6.1297 -0.9806 23 1 5.8342 -6.2472 -0.9796 24 1 3.7502 -7.4810 -1.1031 25 1 3.9247 -5.2902 -2.1280 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8509 0.5684 0.8426 32 1 3.9786 2.1765 0.0902 33 1 3.6768 2.3017 -2.3863 34 1 4.0771 0.8446 -3.3270 35 1 6.5674 -0.0850 -1.6767 36 1 6.2638 -0.0296 -3.4271 37 1 8.8193 0.1674 -2.6760 38 1 9.4970 2.2810 -3.3058 39 1 7.8008 3.8131 -4.2597 40 1 7.5599 3.9324 -2.5014 41 1 5.9696 2.2482 -4.4816 42 1 5.3794 3.6029 -3.4826 43 1 4.4280 -1.3638 0.6912 44 1 2.7357 -1.4813 0.1522 45 1 3.3371 -3.3795 -1.3249 46 1 5.0296 -3.2626 -0.7863 47 1 3.5968 -7.0532 1.5990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360450374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:15 Heat of formation + Delta-G solvation = -104.697734 kcal Electronic energy + Delta-G solvation = -25063.779461 eV Core-core repulsion = 21631.460509 eV Total energy + Delta-G solvation = -3432.318952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23178 -39.27205 -38.72311 -36.48321 -35.52670 -33.56213 -32.70060 -31.62043 -30.35975 -28.54222 -27.18614 -26.42448 -24.02113 -23.91509 -22.97697 -21.82360 -19.78272 -19.20559 -18.71685 -17.75292 -17.49426 -17.32479 -16.84702 -16.54059 -16.25042 -16.11419 -15.39075 -15.28101 -14.91039 -14.63561 -14.44125 -14.41356 -14.07407 -13.67420 -13.53241 -13.39058 -13.31699 -13.06240 -12.91244 -12.82476 -12.67587 -12.36535 -12.23205 -11.95961 -11.77629 -11.63975 -11.58766 -11.48158 -11.34695 -11.05129 -10.77361 -10.52936 -10.51115 -9.87558 -9.51699 -8.31184 -6.32781 1.30464 1.31715 1.39386 1.48303 1.82233 2.14681 2.34515 2.95175 3.04336 3.71479 3.77774 3.91079 3.97250 4.19411 4.20782 4.31788 4.40067 4.45797 4.47182 4.49662 4.53127 4.56568 4.60830 4.63571 4.66735 4.72079 4.78926 4.80619 4.90439 4.95442 5.03392 5.06413 5.13874 5.16076 5.17086 5.33277 5.42074 5.51176 5.57232 5.62965 5.73875 5.78241 6.07618 6.26619 6.37747 6.48022 6.72479 7.31859 7.39003 8.84858 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.004939 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.455075 B = 5667.809446 C = 7410.040258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.415 6.415 3 C 0.038 3.962 4 C 0.104 3.896 5 N -0.607 5.607 6 C 0.119 3.881 7 C -0.092 4.092 8 H 0.083 0.917 9 C -0.076 4.076 10 C -0.176 4.176 11 C -0.153 4.153 12 C -0.087 4.087 13 C -0.109 4.109 14 C 0.523 3.477 15 O -0.582 6.582 16 C -0.120 4.120 17 C 0.012 3.988 18 C -0.523 4.523 19 H 0.047 0.953 20 C 0.016 3.984 21 N -0.943 5.943 22 Si 0.936 3.064 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.266 1.266 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 26.694 -7.337 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.335 6.335 3 C -0.039 4.039 4 C -0.019 4.019 5 N -0.339 5.339 6 C -0.003 4.003 7 C -0.112 4.112 8 H 0.102 0.898 9 C -0.114 4.114 10 C -0.194 4.194 11 C -0.171 4.171 12 C -0.124 4.124 13 C -0.147 4.147 14 C 0.313 3.687 15 O -0.462 6.462 16 C -0.159 4.159 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.065 0.935 20 C -0.181 4.181 21 N -0.584 5.584 22 Si 0.760 3.240 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.190 1.190 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.022 0.978 46 H 0.019 0.981 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.411 26.093 -7.817 27.275 hybrid contribution 0.116 -1.264 -0.319 1.308 sum 1.527 24.830 -8.136 26.173 Atomic orbital electron populations 1.22793 0.80314 1.02689 1.00822 1.87951 1.20875 1.29056 1.95583 1.23214 0.93787 0.84777 1.02082 1.21984 0.92986 1.01160 0.85731 1.47930 1.66803 1.05000 1.14190 1.21638 0.95545 0.94928 0.88162 1.21575 0.93954 0.95213 1.00441 0.89844 1.20354 0.93027 0.97811 1.00175 1.22137 0.96922 0.97984 1.02346 1.22300 1.00493 0.94749 0.99535 1.20504 0.93017 0.95757 1.03139 1.21599 0.97268 0.98680 0.97113 1.20971 0.75071 0.83146 0.89474 1.90602 1.48465 1.74053 1.33103 1.21638 1.04768 0.94024 0.95509 1.19160 0.95359 0.93010 0.95093 1.21397 1.44577 0.91770 0.98354 0.93459 1.25747 0.95047 0.98026 0.99308 1.70015 1.51078 1.05662 1.31642 0.85872 0.79165 0.77907 0.81014 1.19419 1.19976 1.19017 0.92332 0.93235 0.90989 0.89791 0.92028 0.90121 0.84925 0.87058 0.92584 0.94527 0.93023 0.89324 0.87020 0.89447 0.89386 0.92804 0.88731 0.89805 0.86747 0.97841 0.98061 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -11.41 7.42 -148.98 -1.11 -12.52 16 3 C 0.04 0.69 6.28 71.98 0.45 1.14 16 4 C 0.10 1.97 5.78 86.38 0.50 2.46 16 5 N -0.61 -16.26 2.39 -821.80 -1.96 -18.22 16 6 C 0.12 2.59 4.99 86.38 0.43 3.02 16 7 C -0.09 -1.88 2.45 -10.65 -0.03 -1.91 16 8 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 9 C -0.08 -2.22 4.02 29.66 0.12 -2.10 16 10 C -0.18 -4.44 9.80 27.04 0.27 -4.18 16 11 C -0.15 -2.94 9.80 27.04 0.27 -2.68 16 12 C -0.09 -1.21 6.11 29.66 0.18 -1.03 16 13 C -0.11 -1.64 5.31 30.73 0.16 -1.48 16 14 C 0.52 20.29 6.17 87.66 0.54 20.83 16 15 O -0.58 -26.97 13.59 -3.02 -0.04 -27.01 16 16 C -0.12 -5.18 4.12 29.85 0.12 -5.06 16 17 C 0.01 0.63 3.33 29.85 0.10 0.73 16 18 C -0.52 -31.93 9.66 25.60 0.25 -31.68 16 19 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 20 C 0.02 1.00 5.47 84.66 0.46 1.47 16 21 N -0.94 -60.79 13.96 21.45 0.30 -60.49 16 22 Si 0.94 48.98 27.47 68.60 1.88 50.86 16 23 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -14.02 6.54 99.48 0.65 -13.36 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.78 6.44 -2.39 -0.02 1.76 16 32 H 0.13 1.38 8.07 -2.39 -0.02 1.36 16 33 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.06 1.55 7.37 -2.38 -0.02 1.53 16 35 H 0.04 1.28 6.99 -2.39 -0.02 1.26 16 36 H 0.05 1.80 7.36 -2.39 -0.02 1.78 16 37 H 0.09 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.11 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 42 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.08 3.40 7.40 -2.39 -0.02 3.39 16 44 H 0.11 4.87 5.12 -2.38 -0.01 4.86 16 45 H 0.00 0.18 7.16 -2.39 -0.02 0.17 16 46 H 0.00 0.06 7.53 -2.39 -0.02 0.04 16 47 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -79.30 365.19 5.01 -74.29 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.86 Total: 11.65 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 5.07 Total: -18.55 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.66 Total: -78.72 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.15 Total: -39.53 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.88 Total: 50.86 kcal Total: -79.30 5.01 -74.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360450374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.410 kcal (2) G-P(sol) polarization free energy of solvation -79.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds