Wall clock time and date at job start Tue Mar 31 2020 06:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 N 1.46507 * 109.46872 * 184.60780 * 3 2 1 5 5 C 1.37104 * 119.99487 * 86.99298 * 4 3 2 6 6 H 1.07994 * 120.00301 * 319.32124 * 5 4 3 7 7 C 1.38951 * 119.99865 * 139.31949 * 5 4 3 8 8 N 1.31407 * 120.00143 * 158.47644 * 7 5 4 9 9 Si 1.86801 * 119.99976 * 338.48348 * 7 5 4 10 10 H 1.48499 * 109.47358 * 95.30614 * 9 7 5 11 11 H 1.48500 * 109.46904 * 215.30666 * 9 7 5 12 12 H 1.48499 * 109.47290 * 335.30248 * 9 7 5 13 13 C 1.34771 * 120.00202 * 266.71530 * 4 3 2 14 14 O 1.21292 * 119.99799 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00190 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47225 * 180.02562 * 15 13 4 17 17 H 1.08998 * 109.47162 * 54.99878 * 16 15 13 18 18 O 1.42903 * 109.46802 * 295.00062 * 16 15 13 19 19 C 1.42903 * 113.99572 * 150.00116 * 18 16 15 20 20 C 1.53003 * 109.47164 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47016 * 175.00276 * 16 15 13 22 22 C 1.30527 * 124.44638 * 245.01934 * 21 16 15 23 23 C 1.51110 * 111.10177 * 179.97438 * 22 21 16 24 24 C 1.54627 * 104.72655 * 16.44146 * 23 22 21 25 25 C 1.51108 * 124.44991 * 64.72784 * 21 16 15 26 26 H 1.09004 * 109.46851 * 175.21823 * 1 2 3 27 27 H 1.08999 * 109.46916 * 295.21406 * 1 2 3 28 28 H 1.08997 * 109.47083 * 55.21748 * 1 2 3 29 29 H 1.09000 * 109.47467 * 239.99907 * 2 1 3 30 30 H 1.09005 * 109.47004 * 119.99845 * 2 1 3 31 31 H 1.09004 * 109.46944 * 64.61766 * 3 2 1 32 32 H 1.08999 * 109.47021 * 304.60945 * 3 2 1 33 33 H 0.96996 * 120.00255 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47182 * 300.00574 * 15 13 4 35 35 H 1.09004 * 109.46957 * 59.99814 * 15 13 4 36 36 H 1.09000 * 109.47437 * 299.99875 * 19 18 16 37 37 H 1.09002 * 109.47513 * 60.00453 * 19 18 16 38 38 H 1.09000 * 109.46894 * 300.00272 * 20 19 18 39 39 H 1.09003 * 109.46902 * 59.99552 * 20 19 18 40 40 H 1.08994 * 109.47265 * 179.97438 * 20 19 18 41 41 H 1.07994 * 124.44889 * 359.96393 * 22 21 16 42 42 H 1.08998 * 110.38003 * 135.25384 * 23 22 21 43 43 H 1.09002 * 110.38454 * 257.62851 * 23 22 21 44 44 H 1.09004 * 111.03720 * 93.39554 * 24 23 22 45 45 H 1.09005 * 111.04044 * 217.33205 * 24 23 22 46 46 H 1.09004 * 110.38159 * 282.39655 * 25 21 16 47 47 H 1.09000 * 110.38860 * 44.76725 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5008 1.4440 -0.1110 5 6 4.0944 1.4142 -1.3465 6 1 3.6906 0.7833 -2.1245 7 6 5.2155 2.1957 -1.5977 8 7 6.0280 1.8821 -2.5817 9 14 5.5677 3.6921 -0.5365 10 1 6.5151 3.3201 0.5449 11 1 6.1672 4.7623 -1.3733 12 1 4.3009 4.1834 0.0626 13 6 4.2611 1.4803 1.0012 14 8 5.4705 1.4820 0.9093 15 6 3.6086 1.5188 2.3591 16 6 4.6880 1.5561 3.4428 17 1 5.3587 2.3955 3.2588 18 8 5.4326 0.3367 3.4155 19 6 6.7913 0.4758 3.8358 20 6 7.4882 -0.8846 3.7675 21 6 4.0389 1.7183 4.7930 22 6 4.1865 2.7621 5.5626 23 6 3.4017 2.6081 6.8447 24 6 3.0713 1.0996 6.9246 25 6 3.1265 0.6965 5.4311 26 1 -0.3633 -1.0241 -0.0857 27 1 -0.3633 0.4378 0.9298 28 1 -0.3633 0.5862 -0.8440 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7457 1.9319 0.9285 32 1 1.6107 1.9796 -0.8458 33 1 6.8103 2.4279 -2.7573 34 1 2.9848 2.4092 2.4373 35 1 2.9914 0.6301 2.4910 36 1 7.3039 1.1803 3.1809 37 1 6.8186 0.8464 4.8605 38 1 6.9754 -1.5888 4.4227 39 1 7.4609 -1.2557 2.7429 40 1 8.5246 -0.7784 4.0876 41 1 4.7903 3.6227 5.3156 42 1 4.0074 2.9099 7.6991 43 1 2.4847 3.1959 6.8016 44 1 3.8224 0.5648 7.5060 45 1 2.0741 0.9385 7.3342 46 1 2.1329 0.7440 4.9854 47 1 3.5441 -0.3047 5.3242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362568736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:25 Heat of formation + Delta-G solvation = -68.093175 kcal Electronic energy + Delta-G solvation = -25550.921990 eV Core-core repulsion = 22120.190331 eV Total energy + Delta-G solvation = -3430.731659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.53464 -38.49449 -37.00508 -35.19019 -32.93627 -32.26886 -31.39086 -29.98479 -28.84157 -27.95851 -25.96361 -24.49567 -22.53517 -22.44666 -21.13157 -20.73236 -19.09827 -18.25386 -17.07496 -16.52485 -16.09324 -15.54113 -15.36966 -14.98274 -14.68440 -14.21878 -14.04820 -13.86323 -13.25269 -12.89666 -12.77656 -12.69509 -12.55931 -12.21205 -12.12811 -11.98789 -11.67708 -11.63692 -11.57100 -11.40889 -11.29804 -11.17382 -11.09445 -10.92588 -10.80826 -10.65950 -10.37424 -10.17036 -9.97159 -9.86800 -9.13994 -8.77208 -8.45624 -8.31780 -7.48552 -6.11579 -3.83648 2.17182 3.36374 3.49158 3.67956 3.94972 4.08775 4.47102 4.61725 4.64031 4.68418 4.96817 5.13256 5.29712 5.35740 5.37179 5.40182 5.41928 5.45608 5.51707 5.60723 5.66055 5.69127 5.72331 5.75257 5.80546 5.83152 5.89176 5.92026 6.00299 6.08547 6.11491 6.17022 6.20963 6.22969 6.30021 6.33473 6.33667 6.43023 6.58573 6.62008 6.82597 6.88412 7.69328 7.94095 8.07719 8.88845 9.05039 9.53770 9.95600 10.94335 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.006105 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.134608 B = 4585.329151 C = 5541.649366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.105 3.895 4 N -0.467 5.467 5 C -0.349 4.349 6 H 0.091 0.909 7 C 0.093 3.907 8 N -0.867 5.867 9 Si 0.911 3.089 10 H -0.257 1.257 11 H -0.311 1.311 12 H -0.284 1.284 13 C 0.452 3.548 14 O -0.536 6.536 15 C -0.130 4.130 16 C 0.157 3.843 17 H 0.069 0.931 18 O -0.359 6.359 19 C 0.064 3.936 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.171 4.171 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.089 4.089 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.270 0.730 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -0.642 16.973 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.019 4.019 4 N -0.189 5.189 5 C -0.475 4.475 6 H 0.109 0.891 7 C -0.115 4.115 8 N -0.502 5.502 9 Si 0.742 3.258 10 H -0.182 1.182 11 H -0.241 1.241 12 H -0.210 1.210 13 C 0.242 3.758 14 O -0.418 6.418 15 C -0.170 4.170 16 C 0.098 3.902 17 H 0.087 0.913 18 O -0.278 6.278 19 C -0.013 4.013 20 C -0.204 4.204 21 C -0.145 4.145 22 C -0.189 4.189 23 C -0.133 4.133 24 C -0.162 4.162 25 C -0.126 4.126 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.698 -0.812 16.732 18.041 hybrid contribution 0.217 1.070 0.431 1.174 sum -6.482 0.258 17.163 18.348 Atomic orbital electron populations 1.21713 0.96238 1.01167 1.01346 1.21903 0.94763 0.98410 1.02664 1.21620 0.83455 0.95773 1.01038 1.43652 1.03513 1.66159 1.05571 1.18730 1.12919 1.27156 0.88647 0.89141 1.25240 0.94315 0.97233 0.94722 1.69781 1.11742 1.37292 1.31416 0.86389 0.78954 0.79686 0.80722 1.18244 1.24076 1.20969 1.20139 0.88062 0.82347 0.85296 1.90509 1.13746 1.51665 1.85917 1.21739 0.98288 1.03417 0.93558 1.20363 0.92070 0.88626 0.89098 0.91311 1.87913 1.22082 1.30316 1.87490 1.22358 0.83312 0.98268 0.97326 1.21686 0.99012 0.96499 1.03188 1.22667 0.98357 0.96740 0.96692 1.23162 1.00745 0.98659 0.96336 1.21301 0.99235 0.96667 0.96059 1.22474 1.01433 0.95684 0.96630 1.21235 0.98570 0.98861 0.93900 0.93133 0.93192 0.92742 0.91237 0.92398 0.92592 0.90972 0.92038 0.89471 0.89161 0.92969 0.94620 0.92530 0.91473 0.91766 0.86108 0.91493 0.90911 0.91329 0.91183 0.90709 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.14 -2.27 6.25 -26.73 -0.17 -2.43 16 3 C 0.11 1.97 5.24 -4.04 -0.02 1.94 16 4 N -0.47 -11.35 2.19 -114.80 -0.25 -11.60 16 5 C -0.35 -10.01 9.72 -14.93 -0.15 -10.15 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 7 C 0.09 2.81 4.79 -17.47 -0.08 2.72 16 8 N -0.87 -27.07 13.96 55.50 0.77 -26.30 16 9 Si 0.91 24.70 24.82 -169.99 -4.22 20.48 16 10 H -0.26 -7.21 6.27 56.52 0.35 -6.86 16 11 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 12 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 13 C 0.45 10.91 5.79 -10.99 -0.06 10.84 16 14 O -0.54 -14.97 10.76 -8.88 -0.10 -15.06 16 15 C -0.13 -2.40 3.86 -27.88 -0.11 -2.50 16 16 C 0.16 2.79 2.05 -27.89 -0.06 2.73 16 17 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 18 O -0.36 -6.84 9.19 -49.66 -0.46 -7.30 16 19 C 0.06 1.08 6.46 37.16 0.24 1.32 16 20 C -0.15 -2.14 10.28 37.16 0.38 -1.76 16 21 C -0.14 -2.04 5.03 -100.74 -0.51 -2.55 16 22 C -0.17 -2.15 10.55 -35.69 -0.38 -2.52 16 23 C -0.10 -0.96 6.81 -26.83 -0.18 -1.14 16 24 C -0.12 -1.23 7.20 -24.93 -0.18 -1.41 16 25 C -0.09 -1.07 6.70 -26.74 -0.18 -1.25 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 0.94 7.59 -51.93 -0.39 0.55 16 31 H 0.06 0.90 6.32 -51.93 -0.33 0.57 16 32 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 34 H 0.09 1.44 7.41 -51.93 -0.38 1.05 16 35 H 0.09 1.53 7.55 -51.93 -0.39 1.13 16 36 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -33.82 373.03 -8.38 -42.21 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.67 Total: -0.41 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.08 Total: -7.63 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.52 Total: -37.90 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.55 Total: -22.36 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.22 Total: 20.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.82 -8.38 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362568736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.886 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds