Wall clock time and date at job start Tue Mar 31 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 N 1.46507 * 109.46872 * 184.60780 * 3 2 1 5 5 C 1.37104 * 119.99487 * 86.99298 * 4 3 2 6 6 H 1.07994 * 120.00301 * 319.32124 * 5 4 3 7 7 C 1.38951 * 119.99865 * 139.31949 * 5 4 3 8 8 N 1.31407 * 120.00143 * 158.47644 * 7 5 4 9 9 Si 1.86801 * 119.99976 * 338.48348 * 7 5 4 10 10 H 1.48499 * 109.47358 * 95.30614 * 9 7 5 11 11 H 1.48500 * 109.46904 * 215.30666 * 9 7 5 12 12 H 1.48499 * 109.47290 * 335.30248 * 9 7 5 13 13 C 1.34771 * 120.00202 * 266.71530 * 4 3 2 14 14 O 1.21292 * 119.99799 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00190 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47225 * 180.02562 * 15 13 4 17 17 H 1.08998 * 109.47162 * 54.99878 * 16 15 13 18 18 O 1.42903 * 109.46802 * 295.00062 * 16 15 13 19 19 C 1.42903 * 113.99572 * 150.00116 * 18 16 15 20 20 C 1.53003 * 109.47164 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47016 * 175.00276 * 16 15 13 22 22 C 1.30527 * 124.44638 * 245.01934 * 21 16 15 23 23 C 1.51110 * 111.10177 * 179.97438 * 22 21 16 24 24 C 1.54627 * 104.72655 * 16.44146 * 23 22 21 25 25 C 1.51108 * 124.44991 * 64.72784 * 21 16 15 26 26 H 1.09004 * 109.46851 * 175.21823 * 1 2 3 27 27 H 1.08999 * 109.46916 * 295.21406 * 1 2 3 28 28 H 1.08997 * 109.47083 * 55.21748 * 1 2 3 29 29 H 1.09000 * 109.47467 * 239.99907 * 2 1 3 30 30 H 1.09005 * 109.47004 * 119.99845 * 2 1 3 31 31 H 1.09004 * 109.46944 * 64.61766 * 3 2 1 32 32 H 1.08999 * 109.47021 * 304.60945 * 3 2 1 33 33 H 0.96996 * 120.00255 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47182 * 300.00574 * 15 13 4 35 35 H 1.09004 * 109.46957 * 59.99814 * 15 13 4 36 36 H 1.09000 * 109.47437 * 299.99875 * 19 18 16 37 37 H 1.09002 * 109.47513 * 60.00453 * 19 18 16 38 38 H 1.09000 * 109.46894 * 300.00272 * 20 19 18 39 39 H 1.09003 * 109.46902 * 59.99552 * 20 19 18 40 40 H 1.08994 * 109.47265 * 179.97438 * 20 19 18 41 41 H 1.07994 * 124.44889 * 359.96393 * 22 21 16 42 42 H 1.08998 * 110.38003 * 135.25384 * 23 22 21 43 43 H 1.09002 * 110.38454 * 257.62851 * 23 22 21 44 44 H 1.09004 * 111.03720 * 93.39554 * 24 23 22 45 45 H 1.09005 * 111.04044 * 217.33205 * 24 23 22 46 46 H 1.09004 * 110.38159 * 282.39655 * 25 21 16 47 47 H 1.09000 * 110.38860 * 44.76725 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5008 1.4440 -0.1110 5 6 4.0944 1.4142 -1.3465 6 1 3.6906 0.7833 -2.1245 7 6 5.2155 2.1957 -1.5977 8 7 6.0280 1.8821 -2.5817 9 14 5.5677 3.6921 -0.5365 10 1 6.5151 3.3201 0.5449 11 1 6.1672 4.7623 -1.3733 12 1 4.3009 4.1834 0.0626 13 6 4.2611 1.4803 1.0012 14 8 5.4705 1.4820 0.9093 15 6 3.6086 1.5188 2.3591 16 6 4.6880 1.5561 3.4428 17 1 5.3587 2.3955 3.2588 18 8 5.4326 0.3367 3.4155 19 6 6.7913 0.4758 3.8358 20 6 7.4882 -0.8846 3.7675 21 6 4.0389 1.7183 4.7930 22 6 4.1865 2.7621 5.5626 23 6 3.4017 2.6081 6.8447 24 6 3.0713 1.0996 6.9246 25 6 3.1265 0.6965 5.4311 26 1 -0.3633 -1.0241 -0.0857 27 1 -0.3633 0.4378 0.9298 28 1 -0.3633 0.5862 -0.8440 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7457 1.9319 0.9285 32 1 1.6107 1.9796 -0.8458 33 1 6.8103 2.4279 -2.7573 34 1 2.9848 2.4092 2.4373 35 1 2.9914 0.6301 2.4910 36 1 7.3039 1.1803 3.1809 37 1 6.8186 0.8464 4.8605 38 1 6.9754 -1.5888 4.4227 39 1 7.4609 -1.2557 2.7429 40 1 8.5246 -0.7784 4.0876 41 1 4.7903 3.6227 5.3156 42 1 4.0074 2.9099 7.6991 43 1 2.4847 3.1959 6.8016 44 1 3.8224 0.5648 7.5060 45 1 2.0741 0.9385 7.3342 46 1 2.1329 0.7440 4.9854 47 1 3.5441 -0.3047 5.3242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362568736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:24 Heat of formation + Delta-G solvation = -87.902806 kcal Electronic energy + Delta-G solvation = -25551.781000 eV Core-core repulsion = 22120.190331 eV Total energy + Delta-G solvation = -3431.590669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10006 -39.87557 -38.23454 -36.93961 -34.81683 -33.67534 -33.18826 -31.28989 -29.95060 -28.95433 -27.55584 -26.15751 -24.06533 -23.72715 -22.46936 -21.67058 -20.96679 -19.48535 -18.78648 -17.94019 -17.55114 -17.30864 -16.70635 -16.37071 -16.04240 -15.72402 -15.53520 -15.38873 -14.96999 -14.56545 -14.39689 -13.90042 -13.85801 -13.60635 -13.41985 -13.26201 -13.07362 -13.02609 -12.80160 -12.66655 -12.58129 -12.45254 -12.18252 -12.10374 -12.04624 -12.01034 -11.89217 -11.87063 -11.66574 -11.49722 -10.72924 -10.48936 -10.31593 -9.69697 -9.51818 -8.41595 -6.12288 1.15715 1.19624 1.31571 1.46745 2.01611 2.45228 2.66562 2.82197 3.14058 3.58673 3.71317 3.93981 4.03377 4.08972 4.12718 4.14596 4.25366 4.26373 4.34142 4.43900 4.46741 4.50316 4.52807 4.61531 4.73550 4.78303 4.83301 4.83831 4.91682 4.94766 5.02120 5.05632 5.08372 5.09396 5.20548 5.24788 5.25606 5.33611 5.42461 5.53099 5.61103 5.73351 5.86540 5.87179 6.36148 6.79815 6.96196 7.39117 7.95367 8.67824 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.006105 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.134608 B = 4585.329151 C = 5541.649366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.481 5.481 5 C -0.344 4.344 6 H 0.062 0.938 7 C 0.044 3.956 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.279 1.279 11 H -0.307 1.307 12 H -0.262 1.262 13 C 0.444 3.556 14 O -0.581 6.581 15 C -0.119 4.119 16 C 0.157 3.843 17 H 0.042 0.958 18 O -0.382 6.382 19 C 0.063 3.937 20 C -0.141 4.141 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.093 4.093 24 C -0.118 4.118 25 C -0.087 4.087 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.270 0.730 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -0.021 20.597 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.023 4.023 4 N -0.204 5.204 5 C -0.471 4.471 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.236 1.236 12 H -0.186 1.186 13 C 0.236 3.764 14 O -0.465 6.465 15 C -0.159 4.159 16 C 0.098 3.902 17 H 0.060 0.940 18 O -0.301 6.301 19 C -0.014 4.014 20 C -0.198 4.198 21 C -0.165 4.165 22 C -0.177 4.177 23 C -0.130 4.130 24 C -0.156 4.156 25 C -0.124 4.124 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.403 -0.186 20.363 22.430 hybrid contribution 1.039 0.802 -0.678 1.478 sum -8.364 0.617 19.685 21.397 Atomic orbital electron populations 1.21652 0.92699 1.02399 1.02814 1.21820 0.97721 0.96391 1.01168 1.21917 0.79749 0.97705 1.02922 1.43899 1.06052 1.66274 1.04147 1.18656 1.12752 1.25830 0.89874 0.91983 1.25919 0.94581 0.99664 0.95821 1.69872 1.12775 1.38791 1.33603 0.85512 0.79080 0.77283 0.78697 1.20612 1.23638 1.18647 1.21198 0.87776 0.80260 0.87193 1.90485 1.16044 1.53117 1.86864 1.21751 0.98687 1.05619 0.89801 1.20336 0.91474 0.87226 0.91146 0.93998 1.87866 1.22951 1.31234 1.88067 1.22438 0.82423 0.98839 0.97683 1.21685 1.00634 0.95555 1.01919 1.22424 1.00123 0.98533 0.95391 1.23470 0.99522 0.97714 0.96990 1.21359 0.99646 0.97132 0.94859 1.22482 1.02803 0.95303 0.94975 1.21255 0.98295 0.97466 0.95417 0.91913 0.90758 0.92415 0.94475 0.92252 0.88893 0.90980 0.92051 0.86627 0.87083 0.96099 0.92293 0.90893 0.94211 0.89172 0.86273 0.90052 0.89319 0.91171 0.89063 0.89739 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.13 -4.12 6.25 30.59 0.19 -3.93 16 3 C 0.10 3.53 5.24 86.38 0.45 3.98 16 4 N -0.48 -23.39 2.19 -635.52 -1.39 -24.78 16 5 C -0.34 -20.37 9.72 84.04 0.82 -19.56 16 6 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 7 C 0.04 2.72 4.79 84.93 0.41 3.13 16 8 N -0.91 -59.51 13.96 21.66 0.30 -59.20 16 9 Si 0.96 52.37 24.82 68.60 1.70 54.08 16 10 H -0.28 -16.07 6.27 99.48 0.62 -15.45 16 11 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 12 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.44 21.39 5.79 87.66 0.51 21.89 16 14 O -0.58 -33.29 10.76 10.73 0.12 -33.18 16 15 C -0.12 -4.16 3.86 29.85 0.12 -4.04 16 16 C 0.16 5.42 2.05 29.85 0.06 5.48 16 17 H 0.04 1.64 7.52 -2.39 -0.02 1.62 16 18 O -0.38 -14.55 9.19 -135.18 -1.24 -15.80 16 19 C 0.06 2.13 6.46 71.98 0.46 2.59 16 20 C -0.14 -4.09 10.28 71.98 0.74 -3.35 16 21 C -0.16 -4.24 5.03 -15.87 -0.08 -4.32 16 22 C -0.16 -3.51 10.55 26.26 0.28 -3.23 16 23 C -0.09 -1.46 6.81 30.53 0.21 -1.25 16 24 C -0.12 -1.82 7.20 31.76 0.23 -1.59 16 25 C -0.09 -1.82 6.70 30.59 0.21 -1.61 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.81 7.59 -2.38 -0.02 1.79 16 31 H 0.09 2.61 6.32 -2.38 -0.02 2.60 16 32 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 33 H 0.27 16.67 8.31 -92.71 -0.77 15.90 16 34 H 0.12 3.38 7.41 -2.39 -0.02 3.37 16 35 H 0.11 3.44 7.55 -2.39 -0.02 3.42 16 36 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.04 373.03 5.62 -72.42 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.82 Total: 14.57 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.31 Total: -8.11 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.09 Total: -83.99 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.13 Total: -48.97 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 1.70 Total: 54.08 kcal Total: -78.04 5.62 -72.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362568736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.480 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds