Wall clock time and date at job start Tue Mar 31 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47187 * 2 1 4 4 C 1.42900 * 114.00022 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.91846 * 18.69500 * 4 3 2 6 6 C 1.53839 * 113.63310 * 247.38840 * 4 3 2 7 7 C 1.53849 * 87.14707 * 270.63665 * 6 4 3 8 8 H 1.08996 * 113.63774 * 89.36743 * 7 6 4 9 9 N 1.46504 * 113.71347 * 220.31689 * 7 6 4 10 10 C 1.46504 * 119.99659 * 30.11694 * 9 7 6 11 11 C 1.34774 * 120.00235 * 210.11534 * 9 7 6 12 12 O 1.21689 * 119.99869 * 0.02562 * 11 9 7 13 13 C 1.46372 * 119.99873 * 179.97438 * 11 9 7 14 14 H 1.07993 * 120.00565 * 0.02562 * 13 11 9 15 15 C 1.40052 * 119.99679 * 180.02562 * 13 11 9 16 16 N 1.30668 * 120.00309 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99913 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46861 * 90.00064 * 17 15 13 19 19 H 1.48499 * 109.47135 * 210.00069 * 17 15 13 20 20 H 1.48501 * 109.47024 * 330.00362 * 17 15 13 21 21 C 1.53396 * 113.63184 * 149.99962 * 4 3 2 22 22 C 1.52720 * 113.54539 * 203.90185 * 21 4 3 23 23 C 1.53142 * 109.24902 * 187.41732 * 22 21 4 24 24 C 1.52966 * 109.43310 * 302.16283 * 23 22 21 25 25 C 1.52972 * 109.68821 * 61.69313 * 24 23 22 26 26 C 1.52725 * 113.54404 * 334.69407 * 21 4 3 27 27 H 1.08999 * 109.47029 * 59.99701 * 1 2 3 28 28 H 1.09001 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46580 * 300.00133 * 1 2 3 30 30 H 1.09000 * 109.46755 * 240.00390 * 2 1 3 31 31 H 1.08999 * 109.47029 * 120.00299 * 2 1 3 32 32 H 1.08997 * 113.60937 * 156.07228 * 6 4 3 33 33 H 1.08999 * 113.60663 * 25.19538 * 6 4 3 34 34 H 1.09000 * 109.47019 * 95.30241 * 10 9 7 35 35 H 1.09006 * 109.47036 * 215.29746 * 10 9 7 36 36 H 1.09000 * 109.47296 * 335.29325 * 10 9 7 37 37 H 0.96991 * 120.00186 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.50963 * 307.34985 * 22 21 4 39 39 H 1.09004 * 109.51012 * 67.48879 * 22 21 4 40 40 H 1.09003 * 109.47757 * 182.17085 * 23 22 21 41 41 H 1.09003 * 109.47754 * 62.15335 * 23 22 21 42 42 H 1.08997 * 109.43793 * 301.62698 * 24 23 22 43 43 H 1.08999 * 109.40066 * 181.73646 * 24 23 22 44 44 H 1.08999 * 109.48354 * 178.31017 * 25 24 23 45 45 H 1.09003 * 109.47561 * 58.28641 * 25 24 23 46 46 H 1.09003 * 109.51153 * 292.50494 * 26 21 4 47 47 H 1.08996 * 109.51064 * 52.60369 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9290 0.5456 -0.3227 6 6 4.0035 2.0488 1.3003 7 6 3.8469 3.4349 0.6514 8 1 2.8755 3.8949 0.8321 9 7 4.9652 4.3419 0.9221 10 6 6.3115 3.8029 1.1301 11 6 4.7554 5.6719 0.9797 12 8 3.6370 6.1195 0.8073 13 6 5.8726 6.5780 1.2507 14 1 6.8651 6.1808 1.4041 15 6 5.6545 7.9601 1.3111 16 7 4.4536 8.4407 1.1260 17 14 7.0803 9.1165 1.6563 18 1 7.7098 9.5226 0.3741 19 1 6.5800 10.3214 2.3656 20 1 8.0848 8.4247 2.5035 21 6 3.9475 2.7220 -0.7033 22 6 5.3793 2.5908 -1.2181 23 6 5.8581 3.9519 -1.7312 24 6 4.9137 4.4425 -2.8300 25 6 3.5063 4.6215 -2.2579 26 6 2.9856 3.2722 -1.7542 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0402 1.7689 1.4869 33 1 3.3608 1.8980 2.1676 34 1 6.8629 3.8299 0.1902 35 1 6.8328 4.4049 1.8745 36 1 6.2406 2.7732 1.4805 37 1 4.3025 9.3979 1.1682 38 1 6.0284 2.2583 -0.4080 39 1 5.4090 1.8647 -2.0305 40 1 6.8659 3.8542 -2.1349 41 1 5.8635 4.6686 -0.9098 42 1 4.8865 3.7114 -3.6379 43 1 5.2722 5.3967 -3.2161 44 1 2.8430 4.9996 -3.0358 45 1 3.5377 5.3306 -1.4306 46 1 2.9192 2.5735 -2.5883 47 1 1.9988 3.4045 -1.3107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364104566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:17 Heat of formation + Delta-G solvation = -55.115081 kcal Electronic energy + Delta-G solvation = -26547.362416 eV Core-core repulsion = 23117.193529 eV Total energy + Delta-G solvation = -3430.168887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80629 -37.56400 -36.46321 -34.77919 -33.08942 -32.43296 -30.72228 -30.24339 -28.11635 -26.53154 -25.86039 -23.59647 -22.98488 -22.13740 -21.89914 -19.99447 -19.47069 -17.66145 -16.47264 -16.26284 -15.66027 -15.54343 -15.45493 -14.77945 -14.30149 -14.11039 -13.74538 -13.33388 -13.15454 -12.83761 -12.69547 -12.53197 -12.33546 -12.12629 -11.96635 -11.57489 -11.47263 -11.33162 -11.27746 -11.10884 -11.05061 -10.87575 -10.82731 -10.48585 -10.25848 -10.18678 -10.16572 -10.00774 -9.63129 -9.52017 -9.38506 -8.95450 -8.79987 -7.50422 -7.03356 -6.15229 -4.60462 3.14996 3.22458 3.24892 3.70205 4.11511 4.57815 4.63731 4.82714 4.90592 5.07749 5.15876 5.24857 5.31182 5.34575 5.41955 5.50040 5.58706 5.72539 5.74355 5.83157 5.87300 5.90211 5.95207 6.01118 6.09311 6.09628 6.13625 6.20195 6.21864 6.30309 6.38839 6.49120 6.55414 6.62851 6.66616 6.79332 6.83299 6.89160 7.00717 7.10279 7.31600 7.47324 7.47732 7.69997 8.19754 8.43276 9.06265 9.49681 10.62328 10.82002 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.005042 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.095517 B = 5551.864365 C = 5767.819437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.359 6.359 4 C 0.073 3.927 5 H 0.067 0.933 6 C -0.178 4.178 7 C 0.162 3.838 8 H 0.109 0.891 9 N -0.629 5.629 10 C 0.083 3.917 11 C 0.560 3.440 12 O -0.572 6.572 13 C -0.544 4.544 14 H 0.070 0.930 15 C 0.089 3.911 16 N -0.765 5.765 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.090 4.090 22 C -0.087 4.087 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.128 4.128 26 C -0.083 4.083 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.044 0.956 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -14.894 -3.722 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.014 3.986 5 H 0.085 0.915 6 C -0.217 4.217 7 C 0.056 3.944 8 H 0.126 0.874 9 N -0.365 5.365 10 C -0.061 4.061 11 C 0.366 3.634 12 O -0.454 6.454 13 C -0.581 4.581 14 H 0.088 0.912 15 C -0.131 4.131 16 N -0.394 5.394 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.173 4.173 24 C -0.146 4.146 25 C -0.165 4.165 26 C -0.121 4.121 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.562 -14.288 -3.808 14.798 hybrid contribution 0.977 0.169 0.140 1.001 sum 0.415 -14.119 -3.669 14.594 Atomic orbital electron populations 1.21734 0.94009 1.01800 1.03278 1.22463 0.95386 0.84517 0.99557 1.87938 1.19979 1.25326 1.94518 1.22967 0.81066 0.97381 0.97164 0.91459 1.24021 1.01247 0.98756 0.97643 1.21970 0.93289 0.87547 0.91599 0.87362 1.47879 1.05800 1.06786 1.76049 1.21845 0.85954 0.97543 1.00728 1.18155 0.89661 0.78914 0.76691 1.90598 1.25513 1.74820 1.54494 1.21016 0.94707 0.90688 1.51679 0.91173 1.25697 0.95729 0.98737 0.92889 1.70012 1.20885 1.13256 1.35260 0.86467 0.81978 0.79907 0.78986 1.19802 1.20564 1.18969 1.22451 0.95416 0.94396 0.96965 1.21310 0.94017 0.97672 0.99462 1.21934 0.96875 0.98024 1.00423 1.21384 0.96118 0.99780 0.97286 1.21636 0.95160 0.98294 1.01437 1.21138 0.98264 0.96032 0.96617 0.91856 0.91498 0.91801 0.93783 0.93751 0.88939 0.91196 0.93457 0.91891 0.93451 0.92222 0.91551 0.93353 0.93417 0.87425 0.93820 0.92863 0.93546 0.88967 0.93707 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.66 6.50 37.16 0.24 0.90 16 3 O -0.36 -5.43 9.09 -35.23 -0.32 -5.75 16 4 C 0.07 1.07 3.81 -26.09 -0.10 0.97 16 5 H 0.07 0.85 7.82 -51.93 -0.41 0.45 16 6 C -0.18 -2.80 7.01 -25.85 -0.18 -2.98 16 7 C 0.16 3.18 3.36 -67.27 -0.23 2.95 16 8 H 0.11 2.54 7.27 -51.93 -0.38 2.17 16 9 N -0.63 -13.61 1.79 -174.84 -0.31 -13.92 16 10 C 0.08 1.48 7.34 59.85 0.44 1.92 16 11 C 0.56 15.22 6.15 -12.99 -0.08 15.14 16 12 O -0.57 -17.76 13.29 5.20 0.07 -17.70 16 13 C -0.54 -14.83 8.73 -35.63 -0.31 -15.14 16 14 H 0.07 1.76 6.11 -52.49 -0.32 1.44 16 15 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 16 N -0.77 -22.56 11.83 55.55 0.66 -21.90 16 17 Si 0.90 19.95 29.56 -169.99 -5.02 14.92 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.09 -1.51 0.74 -154.38 -0.11 -1.62 16 22 C -0.09 -1.34 4.42 -26.80 -0.12 -1.46 16 23 C -0.14 -2.35 4.41 -26.68 -0.12 -2.47 16 24 C -0.11 -1.89 5.86 -26.76 -0.16 -2.05 16 25 C -0.13 -2.48 5.85 -26.67 -0.16 -2.63 16 26 C -0.08 -1.46 4.70 -26.80 -0.13 -1.59 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.31 5.15 -51.93 -0.27 1.04 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.80 4.76 -51.93 -0.25 0.55 16 35 H 0.06 1.18 6.41 -51.93 -0.33 0.85 16 36 H 0.05 0.71 4.83 -51.93 -0.25 0.45 16 37 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 38 H 0.07 0.95 4.75 -51.93 -0.25 0.70 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 2.25 3.77 -51.93 -0.20 2.05 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.23 6.18 -51.93 -0.32 1.91 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 1.25 7.48 -51.93 -0.39 0.86 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -31.76 342.10 -8.06 -39.82 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.56 Total: 6.19 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.72 Total: -6.82 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.34 Total: -35.82 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.25 Total: -23.44 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.76 -8.06 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364104566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.292 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds