Wall clock time and date at job start Tue Mar 31 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47187 * 2 1 4 4 C 1.42900 * 114.00022 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.91846 * 18.69500 * 4 3 2 6 6 C 1.53839 * 113.63310 * 247.38840 * 4 3 2 7 7 C 1.53849 * 87.14707 * 270.63665 * 6 4 3 8 8 H 1.08996 * 113.63774 * 89.36743 * 7 6 4 9 9 N 1.46504 * 113.71347 * 220.31689 * 7 6 4 10 10 C 1.46504 * 119.99659 * 30.11694 * 9 7 6 11 11 C 1.34774 * 120.00235 * 210.11534 * 9 7 6 12 12 O 1.21689 * 119.99869 * 0.02562 * 11 9 7 13 13 C 1.46372 * 119.99873 * 179.97438 * 11 9 7 14 14 H 1.07993 * 120.00565 * 0.02562 * 13 11 9 15 15 C 1.40052 * 119.99679 * 180.02562 * 13 11 9 16 16 N 1.30668 * 120.00309 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99913 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46861 * 90.00064 * 17 15 13 19 19 H 1.48499 * 109.47135 * 210.00069 * 17 15 13 20 20 H 1.48501 * 109.47024 * 330.00362 * 17 15 13 21 21 C 1.53396 * 113.63184 * 149.99962 * 4 3 2 22 22 C 1.52720 * 113.54539 * 203.90185 * 21 4 3 23 23 C 1.53142 * 109.24902 * 187.41732 * 22 21 4 24 24 C 1.52966 * 109.43310 * 302.16283 * 23 22 21 25 25 C 1.52972 * 109.68821 * 61.69313 * 24 23 22 26 26 C 1.52725 * 113.54404 * 334.69407 * 21 4 3 27 27 H 1.08999 * 109.47029 * 59.99701 * 1 2 3 28 28 H 1.09001 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46580 * 300.00133 * 1 2 3 30 30 H 1.09000 * 109.46755 * 240.00390 * 2 1 3 31 31 H 1.08999 * 109.47029 * 120.00299 * 2 1 3 32 32 H 1.08997 * 113.60937 * 156.07228 * 6 4 3 33 33 H 1.08999 * 113.60663 * 25.19538 * 6 4 3 34 34 H 1.09000 * 109.47019 * 95.30241 * 10 9 7 35 35 H 1.09006 * 109.47036 * 215.29746 * 10 9 7 36 36 H 1.09000 * 109.47296 * 335.29325 * 10 9 7 37 37 H 0.96991 * 120.00186 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.50963 * 307.34985 * 22 21 4 39 39 H 1.09004 * 109.51012 * 67.48879 * 22 21 4 40 40 H 1.09003 * 109.47757 * 182.17085 * 23 22 21 41 41 H 1.09003 * 109.47754 * 62.15335 * 23 22 21 42 42 H 1.08997 * 109.43793 * 301.62698 * 24 23 22 43 43 H 1.08999 * 109.40066 * 181.73646 * 24 23 22 44 44 H 1.08999 * 109.48354 * 178.31017 * 25 24 23 45 45 H 1.09003 * 109.47561 * 58.28641 * 25 24 23 46 46 H 1.09003 * 109.51153 * 292.50494 * 26 21 4 47 47 H 1.08996 * 109.51064 * 52.60369 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9290 0.5456 -0.3227 6 6 4.0035 2.0488 1.3003 7 6 3.8469 3.4349 0.6514 8 1 2.8755 3.8949 0.8321 9 7 4.9652 4.3419 0.9221 10 6 6.3115 3.8029 1.1301 11 6 4.7554 5.6719 0.9797 12 8 3.6370 6.1195 0.8073 13 6 5.8726 6.5780 1.2507 14 1 6.8651 6.1808 1.4041 15 6 5.6545 7.9601 1.3111 16 7 4.4536 8.4407 1.1260 17 14 7.0803 9.1165 1.6563 18 1 7.7098 9.5226 0.3741 19 1 6.5800 10.3214 2.3656 20 1 8.0848 8.4247 2.5035 21 6 3.9475 2.7220 -0.7033 22 6 5.3793 2.5908 -1.2181 23 6 5.8581 3.9519 -1.7312 24 6 4.9137 4.4425 -2.8300 25 6 3.5063 4.6215 -2.2579 26 6 2.9856 3.2722 -1.7542 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0402 1.7689 1.4869 33 1 3.3608 1.8980 2.1676 34 1 6.8629 3.8299 0.1902 35 1 6.8328 4.4049 1.8745 36 1 6.2406 2.7732 1.4805 37 1 4.3025 9.3979 1.1682 38 1 6.0284 2.2583 -0.4080 39 1 5.4090 1.8647 -2.0305 40 1 6.8659 3.8542 -2.1349 41 1 5.8635 4.6686 -0.9098 42 1 4.8865 3.7114 -3.6379 43 1 5.2722 5.3967 -3.2161 44 1 2.8430 4.9996 -3.0358 45 1 3.5377 5.3306 -1.4306 46 1 2.9192 2.5735 -2.5883 47 1 1.9988 3.4045 -1.3107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364104566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:17 Heat of formation + Delta-G solvation = -74.654628 kcal Electronic energy + Delta-G solvation = -26548.209714 eV Core-core repulsion = 23117.193529 eV Total energy + Delta-G solvation = -3431.016185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19649 -39.05095 -38.05099 -36.24719 -34.71881 -34.52500 -31.72360 -31.62234 -29.50179 -28.45935 -27.46537 -25.08443 -24.07102 -23.35400 -23.27637 -21.50645 -21.16130 -19.05181 -18.35417 -17.71896 -17.35901 -16.90413 -16.49974 -16.35174 -15.89739 -15.56249 -15.25796 -14.72736 -14.43229 -14.39314 -14.21314 -13.82029 -13.75121 -13.40478 -13.24990 -13.10177 -13.01026 -12.87099 -12.77223 -12.54328 -12.36771 -12.28731 -12.15114 -12.03837 -11.96850 -11.91424 -11.61466 -11.39661 -11.01234 -10.96489 -10.83226 -10.71020 -10.16162 -9.62756 -8.76904 -8.21269 -6.75252 1.39219 1.40552 1.54690 2.25727 2.54555 2.68210 3.01121 3.55708 3.59129 3.74101 3.91556 3.98015 4.13449 4.20499 4.24571 4.32139 4.36501 4.41970 4.50108 4.55374 4.57641 4.65050 4.73575 4.74676 4.84653 4.87626 4.89541 4.93656 5.03173 5.05984 5.07771 5.14335 5.18347 5.25107 5.28420 5.30517 5.41372 5.45480 5.51747 5.53418 5.61398 5.82160 5.90510 6.23596 6.45565 6.59596 6.95356 7.58187 8.59222 8.78887 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.005042 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.095517 B = 5551.864365 C = 5767.819437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.389 6.389 4 C 0.089 3.911 5 H 0.108 0.892 6 C -0.164 4.164 7 C 0.141 3.859 8 H 0.050 0.950 9 N -0.624 5.624 10 C 0.080 3.920 11 C 0.549 3.451 12 O -0.627 6.627 13 C -0.567 4.567 14 H 0.089 0.911 15 C 0.031 3.969 16 N -0.823 5.823 17 Si 0.987 3.013 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.247 1.247 21 C -0.087 4.087 22 C -0.081 4.081 23 C -0.138 4.138 24 C -0.104 4.104 25 C -0.127 4.127 26 C -0.076 4.076 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.269 0.731 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.046 0.954 45 H 0.033 0.967 46 H 0.072 0.928 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -18.348 -4.422 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.309 6.309 4 C 0.030 3.970 5 H 0.126 0.874 6 C -0.202 4.202 7 C 0.036 3.964 8 H 0.068 0.932 9 N -0.358 5.358 10 C -0.062 4.062 11 C 0.354 3.646 12 O -0.514 6.514 13 C -0.604 4.604 14 H 0.107 0.893 15 C -0.184 4.184 16 N -0.453 5.453 17 Si 0.807 3.193 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.170 1.170 21 C -0.089 4.089 22 C -0.118 4.118 23 C -0.175 4.175 24 C -0.142 4.142 25 C -0.165 4.165 26 C -0.113 4.113 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.273 -17.814 -4.504 18.514 hybrid contribution -0.014 1.207 0.341 1.254 sum 2.259 -16.607 -4.162 17.269 Atomic orbital electron populations 1.21769 0.93578 1.03268 1.02164 1.22731 0.95870 0.82904 1.01097 1.87944 1.20361 1.28042 1.94521 1.22853 0.81312 0.97610 0.95197 0.87432 1.24003 1.02808 0.95295 0.98126 1.22027 0.90197 0.88558 0.95659 0.93189 1.47614 1.07885 1.05433 1.74883 1.22038 0.83697 0.99111 1.01338 1.18431 0.88914 0.81071 0.76153 1.90553 1.27476 1.76668 1.56698 1.21513 0.95549 0.91508 1.51784 0.89290 1.26894 0.98795 1.00776 0.91930 1.70214 1.24068 1.13758 1.37264 0.85180 0.77880 0.77006 0.79247 1.18846 1.20304 1.17036 1.22459 0.96687 0.94923 0.94817 1.21324 0.92481 0.96941 1.01054 1.21899 0.98181 0.98405 0.99039 1.21361 0.94426 1.00122 0.98260 1.21556 0.97250 0.98204 0.99470 1.21046 0.97186 0.95416 0.97690 0.92777 0.88692 0.93167 0.91822 0.92384 0.86288 0.91764 0.91970 0.93049 0.89676 0.92097 0.89726 0.90073 0.91007 0.91436 0.90560 0.94311 0.93512 0.94796 0.90967 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.05 0.99 6.50 71.98 0.47 1.46 16 3 O -0.39 -11.25 9.09 -148.98 -1.35 -12.60 16 4 C 0.09 2.33 3.81 31.01 0.12 2.45 16 5 H 0.11 2.05 7.82 -2.39 -0.02 2.03 16 6 C -0.16 -4.81 7.01 31.16 0.22 -4.59 16 7 C 0.14 5.68 3.36 45.41 0.15 5.83 16 8 H 0.05 2.58 7.27 -2.39 -0.02 2.57 16 9 N -0.62 -27.66 1.79 -825.29 -1.48 -29.14 16 10 C 0.08 2.73 7.34 127.77 0.94 3.66 16 11 C 0.55 31.65 6.15 86.36 0.53 32.18 16 12 O -0.63 -42.49 13.29 -4.31 -0.06 -42.55 16 13 C -0.57 -31.98 8.73 24.83 0.22 -31.77 16 14 H 0.09 4.50 6.11 -2.91 -0.02 4.48 16 15 C 0.03 1.73 5.50 85.31 0.47 2.20 16 16 N -0.82 -51.52 11.83 21.84 0.26 -51.26 16 17 Si 0.99 41.77 29.56 68.60 2.03 43.80 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 21 C -0.09 -2.77 0.74 -52.10 -0.04 -2.81 16 22 C -0.08 -2.16 4.42 30.55 0.14 -2.02 16 23 C -0.14 -4.51 4.41 30.63 0.13 -4.38 16 24 C -0.10 -3.57 5.86 30.57 0.18 -3.39 16 25 C -0.13 -5.16 5.85 30.63 0.18 -4.98 16 26 C -0.08 -2.68 4.70 30.55 0.14 -2.54 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.12 2.83 5.15 -2.39 -0.01 2.81 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.95 4.76 -2.39 -0.01 1.94 16 35 H 0.05 1.86 6.41 -2.38 -0.02 1.84 16 36 H 0.09 2.20 4.83 -2.39 -0.01 2.19 16 37 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 38 H 0.08 1.96 4.75 -2.39 -0.01 1.95 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.82 3.77 -2.39 -0.01 2.81 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.03 1.78 6.18 -2.39 -0.01 1.77 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.04 1.51 7.48 -2.39 -0.02 1.50 16 Total: -1.00 -78.32 342.10 4.94 -73.37 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.96 Total: 29.09 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.59 Total: -10.72 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.22 Total: -80.40 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -1.41 Total: -55.15 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -78.32 4.94 -73.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364104566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.281 kcal (2) G-P(sol) polarization free energy of solvation -78.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds