Wall clock time and date at job start Tue Mar 31 2020 07:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.42901 * 113.99775 * 179.97438 * 3 2 1 5 5 H 1.08995 * 112.92629 * 341.30782 * 4 3 2 6 6 C 1.54037 * 113.68036 * 112.54657 * 4 3 2 7 7 C 1.53853 * 87.07813 * 139.62598 * 6 4 3 8 8 H 1.08999 * 113.63362 * 89.48334 * 7 6 4 9 9 N 1.46500 * 113.63314 * 220.36005 * 7 6 4 10 10 C 1.46499 * 119.99910 * 21.52492 * 9 7 6 11 11 C 1.34776 * 120.00001 * 201.53200 * 9 7 6 12 12 O 1.21696 * 120.00051 * 359.97438 * 11 9 7 13 13 C 1.46369 * 119.99926 * 179.97438 * 11 9 7 14 14 H 1.07994 * 120.00283 * 0.02562 * 13 11 9 15 15 C 1.40050 * 120.00008 * 179.97438 * 13 11 9 16 16 N 1.30673 * 120.00155 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00126 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47001 * 90.00428 * 17 15 13 19 19 H 1.48504 * 109.46990 * 210.00072 * 17 15 13 20 20 H 1.48495 * 109.47041 * 330.00043 * 17 15 13 21 21 C 1.53389 * 113.63104 * 209.99859 * 4 3 2 22 22 C 1.52730 * 113.55320 * 334.84879 * 21 4 3 23 23 C 1.53137 * 109.23593 * 187.46260 * 22 21 4 24 24 C 1.52969 * 109.43728 * 302.17506 * 23 22 21 25 25 C 1.52973 * 109.70233 * 61.68507 * 24 23 22 26 26 C 1.52718 * 113.55812 * 105.67124 * 21 4 3 27 27 H 1.09005 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47219 * 299.99660 * 1 2 3 29 29 H 1.09000 * 109.47441 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47075 * 239.99840 * 2 1 3 31 31 H 1.08997 * 109.47365 * 120.00572 * 2 1 3 32 32 H 1.08996 * 113.60578 * 25.09251 * 6 4 3 33 33 H 1.08998 * 113.65966 * 254.16517 * 6 4 3 34 34 H 1.08999 * 109.47300 * 264.23515 * 10 9 7 35 35 H 1.09001 * 109.46763 * 144.23250 * 10 9 7 36 36 H 1.09000 * 109.46908 * 24.23707 * 10 9 7 37 37 H 0.96999 * 120.00358 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.51112 * 307.39144 * 22 21 4 39 39 H 1.09000 * 109.51108 * 67.53371 * 22 21 4 40 40 H 1.09004 * 109.47873 * 182.18519 * 23 22 21 41 41 H 1.08998 * 109.47637 * 62.16618 * 23 22 21 42 42 H 1.09007 * 109.43160 * 301.61692 * 24 23 22 43 43 H 1.08999 * 109.39387 * 181.73610 * 24 23 22 44 44 H 1.09002 * 109.48241 * 178.31802 * 25 24 23 45 45 H 1.09002 * 109.47258 * 58.29166 * 25 24 23 46 46 H 1.09002 * 109.51376 * 292.45969 * 26 21 4 47 47 H 1.09009 * 109.51007 * 52.60510 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9290 0.5456 0.3226 6 6 4.0055 2.0478 -1.3021 7 6 4.9862 2.8393 -0.4196 8 1 5.9150 2.3074 -0.2130 9 7 5.2068 4.2144 -0.8741 10 6 4.2189 4.8684 -1.7359 11 6 6.3186 4.8778 -0.4996 12 8 7.1391 4.3347 0.2165 13 6 6.5392 6.2515 -0.9542 14 1 5.8109 6.7337 -1.5893 15 6 7.6942 6.9411 -0.5646 16 7 8.5753 6.3579 0.2043 17 14 7.9754 8.6946 -1.1441 18 1 7.3809 9.6405 -0.1659 19 1 9.4339 8.9507 -1.2569 20 1 7.3352 8.8863 -2.4702 21 6 3.9475 2.7218 0.7032 22 6 2.9375 3.8674 0.7208 23 6 3.6123 5.1265 1.2726 24 6 4.1555 4.8404 2.6738 25 6 5.2081 3.7327 2.6026 26 6 4.5615 2.4488 2.0746 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.3008 2.6778 -1.8448 33 1 4.4908 1.3083 -1.9390 34 1 4.5203 4.7643 -2.7782 35 1 4.1566 5.9260 -1.4794 36 1 3.2447 4.4014 -1.5910 37 1 9.3751 6.8356 0.4745 38 1 2.5852 4.0578 -0.2929 39 1 2.0934 3.5987 1.3559 40 1 2.8846 5.9364 1.3233 41 1 4.4333 5.4160 0.6167 42 1 3.3383 4.5231 3.3217 43 1 4.6084 5.7457 3.0782 44 1 5.6141 3.5525 3.5980 45 1 6.0115 4.0374 1.9319 46 1 3.7825 2.1234 2.7641 47 1 5.3188 1.6697 1.9859 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364104567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:20 Heat of formation + Delta-G solvation = -61.379624 kcal Electronic energy + Delta-G solvation = -26585.591542 eV Core-core repulsion = 23155.151004 eV Total energy + Delta-G solvation = -3430.440538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74384 -37.54036 -36.41386 -34.84838 -33.03863 -32.45262 -30.90144 -30.02664 -28.06683 -26.53465 -25.91936 -23.58684 -22.87928 -22.20288 -21.78443 -19.91175 -19.43746 -17.50799 -16.72685 -16.28806 -15.64245 -15.53593 -15.41993 -14.86091 -14.21919 -13.93437 -13.75823 -13.34504 -13.23399 -12.85554 -12.62084 -12.44254 -12.38511 -12.20054 -12.02174 -11.57800 -11.41561 -11.37037 -11.24989 -11.15658 -11.02146 -10.93266 -10.59588 -10.53646 -10.31204 -10.24096 -10.11718 -10.04133 -9.70783 -9.43986 -9.37424 -8.87816 -8.79160 -7.53767 -7.03738 -6.18221 -4.62851 3.13959 3.21717 3.24133 3.78051 4.11574 4.53864 4.67093 4.82408 4.91044 5.03332 5.05244 5.21762 5.25003 5.33275 5.49789 5.55333 5.60003 5.77502 5.82973 5.84378 5.86933 5.91381 5.97744 6.02559 6.04397 6.16756 6.19722 6.22565 6.25032 6.35184 6.43917 6.51022 6.52412 6.66588 6.71837 6.76227 6.92811 6.95905 7.02566 7.27408 7.44398 7.46308 7.48552 7.65511 8.17206 8.39815 9.03906 9.45475 10.58739 10.77990 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.004947 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.338868 B = 5658.371830 C = 5949.312453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.069 3.931 5 H 0.082 0.918 6 C -0.169 4.169 7 C 0.154 3.846 8 H 0.101 0.899 9 N -0.626 5.626 10 C 0.092 3.908 11 C 0.561 3.439 12 O -0.571 6.571 13 C -0.543 4.543 14 H 0.070 0.930 15 C 0.090 3.910 16 N -0.765 5.765 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.084 4.084 22 C -0.076 4.076 23 C -0.137 4.137 24 C -0.106 4.106 25 C -0.137 4.137 26 C -0.092 4.092 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.267 0.733 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.110 0.890 46 H 0.047 0.953 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -8.167 -0.260 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.011 3.989 5 H 0.100 0.900 6 C -0.207 4.207 7 C 0.047 3.953 8 H 0.119 0.881 9 N -0.363 5.363 10 C -0.052 4.052 11 C 0.368 3.632 12 O -0.454 6.454 13 C -0.580 4.580 14 H 0.088 0.912 15 C -0.130 4.130 16 N -0.393 5.393 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.086 4.086 22 C -0.113 4.113 23 C -0.175 4.175 24 C -0.143 4.143 25 C -0.174 4.174 26 C -0.129 4.129 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.128 0.872 46 H 0.066 0.934 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.902 -8.277 0.221 14.499 hybrid contribution 0.172 0.553 -0.286 0.647 sum -11.730 -7.724 -0.066 14.044 Atomic orbital electron populations 1.21727 0.94204 1.01781 1.03002 1.22443 0.95251 0.84868 0.99610 1.87960 1.20954 1.25158 1.94583 1.23648 0.80396 0.97791 0.97115 0.90038 1.24031 0.99400 1.00090 0.97225 1.21738 0.95708 0.85484 0.92325 0.88109 1.47809 1.23270 1.11911 1.53295 1.21660 0.91793 0.98368 0.93354 1.18106 0.78473 0.86568 0.80063 1.90548 1.44560 1.69644 1.40623 1.21013 1.06526 0.97318 1.33098 0.91159 1.25686 0.95187 0.98798 0.93333 1.70007 1.07419 1.36097 1.25814 0.86465 0.77890 0.83159 0.79838 1.19780 1.20560 1.18937 1.22455 0.96549 0.93909 0.95655 1.21092 0.95885 0.93456 1.00873 1.21912 1.01587 0.96240 0.97731 1.21341 0.97625 0.98420 0.96938 1.21793 1.00070 0.94279 1.01220 1.21335 0.98412 0.98053 0.95144 0.91570 0.91985 0.91978 0.93790 0.93795 0.88755 0.91671 0.95188 0.91522 0.92403 0.92211 0.91528 0.93080 0.93770 0.87768 0.94094 0.93002 0.93810 0.87197 0.93397 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.60 6.50 37.16 0.24 0.85 16 3 O -0.37 -5.20 9.50 -35.23 -0.33 -5.54 16 4 C 0.07 1.01 3.75 -25.99 -0.10 0.91 16 5 H 0.08 1.10 7.82 -51.93 -0.41 0.69 16 6 C -0.17 -2.61 6.94 -25.75 -0.18 -2.79 16 7 C 0.15 2.91 3.30 -67.27 -0.22 2.69 16 8 H 0.10 2.14 7.46 -51.93 -0.39 1.75 16 9 N -0.63 -13.39 1.72 -174.84 -0.30 -13.69 16 10 C 0.09 1.68 7.31 59.85 0.44 2.12 16 11 C 0.56 14.88 5.62 -12.99 -0.07 14.81 16 12 O -0.57 -17.02 12.29 5.19 0.06 -16.95 16 13 C -0.54 -14.60 8.65 -35.63 -0.31 -14.91 16 14 H 0.07 1.76 6.12 -52.49 -0.32 1.44 16 15 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 16 N -0.76 -22.10 11.83 55.55 0.66 -21.44 16 17 Si 0.90 19.79 29.56 -169.99 -5.02 14.76 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 C -0.08 -1.42 0.74 -154.38 -0.11 -1.53 16 22 C -0.08 -1.29 3.80 -26.80 -0.10 -1.39 16 23 C -0.14 -2.57 5.40 -26.68 -0.14 -2.71 16 24 C -0.11 -1.97 5.86 -26.76 -0.16 -2.13 16 25 C -0.14 -2.70 5.85 -26.67 -0.16 -2.86 16 26 C -0.09 -1.59 5.09 -26.80 -0.14 -1.73 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.45 5.61 -51.93 -0.29 1.15 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 1.25 6.15 -51.93 -0.32 0.94 16 36 H 0.06 0.92 3.58 -51.93 -0.19 0.74 16 37 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 38 H 0.07 1.10 4.53 -51.93 -0.24 0.87 16 39 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 2.28 3.50 -51.93 -0.18 2.10 16 42 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.11 2.68 4.89 -51.93 -0.25 2.43 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.92 8.10 -51.92 -0.42 0.50 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -30.60 342.66 -8.13 -38.73 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.63 Total: 6.31 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.72 Total: -7.34 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.36 Total: -35.13 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.27 Total: -22.49 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.60 -8.13 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364104567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.651 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds