Wall clock time and date at job start Tue Mar 31 2020 07:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47235 * 2 1 4 4 C 1.42901 * 113.99775 * 179.97438 * 3 2 1 5 5 H 1.08995 * 112.92629 * 341.30782 * 4 3 2 6 6 C 1.54037 * 113.68036 * 112.54657 * 4 3 2 7 7 C 1.53853 * 87.07813 * 139.62598 * 6 4 3 8 8 H 1.08999 * 113.63362 * 89.48334 * 7 6 4 9 9 N 1.46500 * 113.63314 * 220.36005 * 7 6 4 10 10 C 1.46499 * 119.99910 * 21.52492 * 9 7 6 11 11 C 1.34776 * 120.00001 * 201.53200 * 9 7 6 12 12 O 1.21696 * 120.00051 * 359.97438 * 11 9 7 13 13 C 1.46369 * 119.99926 * 179.97438 * 11 9 7 14 14 H 1.07994 * 120.00283 * 0.02562 * 13 11 9 15 15 C 1.40050 * 120.00008 * 179.97438 * 13 11 9 16 16 N 1.30673 * 120.00155 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00126 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47001 * 90.00428 * 17 15 13 19 19 H 1.48504 * 109.46990 * 210.00072 * 17 15 13 20 20 H 1.48495 * 109.47041 * 330.00043 * 17 15 13 21 21 C 1.53389 * 113.63104 * 209.99859 * 4 3 2 22 22 C 1.52730 * 113.55320 * 334.84879 * 21 4 3 23 23 C 1.53137 * 109.23593 * 187.46260 * 22 21 4 24 24 C 1.52969 * 109.43728 * 302.17506 * 23 22 21 25 25 C 1.52973 * 109.70233 * 61.68507 * 24 23 22 26 26 C 1.52718 * 113.55812 * 105.67124 * 21 4 3 27 27 H 1.09005 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47219 * 299.99660 * 1 2 3 29 29 H 1.09000 * 109.47441 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47075 * 239.99840 * 2 1 3 31 31 H 1.08997 * 109.47365 * 120.00572 * 2 1 3 32 32 H 1.08996 * 113.60578 * 25.09251 * 6 4 3 33 33 H 1.08998 * 113.65966 * 254.16517 * 6 4 3 34 34 H 1.08999 * 109.47300 * 264.23515 * 10 9 7 35 35 H 1.09001 * 109.46763 * 144.23250 * 10 9 7 36 36 H 1.09000 * 109.46908 * 24.23707 * 10 9 7 37 37 H 0.96999 * 120.00358 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.51112 * 307.39144 * 22 21 4 39 39 H 1.09000 * 109.51108 * 67.53371 * 22 21 4 40 40 H 1.09004 * 109.47873 * 182.18519 * 23 22 21 41 41 H 1.08998 * 109.47637 * 62.16618 * 23 22 21 42 42 H 1.09007 * 109.43160 * 301.61692 * 24 23 22 43 43 H 1.08999 * 109.39387 * 181.73610 * 24 23 22 44 44 H 1.09002 * 109.48241 * 178.31802 * 25 24 23 45 45 H 1.09002 * 109.47258 * 58.29166 * 25 24 23 46 46 H 1.09002 * 109.51376 * 292.45969 * 26 21 4 47 47 H 1.09009 * 109.51007 * 52.60510 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9290 0.5456 0.3226 6 6 4.0055 2.0478 -1.3021 7 6 4.9862 2.8393 -0.4196 8 1 5.9150 2.3074 -0.2130 9 7 5.2068 4.2144 -0.8741 10 6 4.2189 4.8684 -1.7359 11 6 6.3186 4.8778 -0.4996 12 8 7.1391 4.3347 0.2165 13 6 6.5392 6.2515 -0.9542 14 1 5.8109 6.7337 -1.5893 15 6 7.6942 6.9411 -0.5646 16 7 8.5753 6.3579 0.2043 17 14 7.9754 8.6946 -1.1441 18 1 7.3809 9.6405 -0.1659 19 1 9.4339 8.9507 -1.2569 20 1 7.3352 8.8863 -2.4702 21 6 3.9475 2.7218 0.7032 22 6 2.9375 3.8674 0.7208 23 6 3.6123 5.1265 1.2726 24 6 4.1555 4.8404 2.6738 25 6 5.2081 3.7327 2.6026 26 6 4.5615 2.4488 2.0746 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.3008 2.6778 -1.8448 33 1 4.4908 1.3083 -1.9390 34 1 4.5203 4.7643 -2.7782 35 1 4.1566 5.9260 -1.4794 36 1 3.2447 4.4014 -1.5910 37 1 9.3751 6.8356 0.4745 38 1 2.5852 4.0578 -0.2929 39 1 2.0934 3.5987 1.3559 40 1 2.8846 5.9364 1.3233 41 1 4.4333 5.4160 0.6167 42 1 3.3383 4.5231 3.3217 43 1 4.6084 5.7457 3.0782 44 1 5.6141 3.5525 3.5980 45 1 6.0115 4.0374 1.9319 46 1 3.7825 2.1234 2.7641 47 1 5.3188 1.6697 1.9859 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364104567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:19 Heat of formation + Delta-G solvation = -78.804438 kcal Electronic energy + Delta-G solvation = -26586.347139 eV Core-core repulsion = 23155.151004 eV Total energy + Delta-G solvation = -3431.196135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15676 -39.01413 -37.93852 -36.33465 -34.69421 -34.48965 -31.85175 -31.41966 -29.49168 -28.43843 -27.53804 -25.01731 -23.90819 -23.61984 -23.08103 -21.49422 -21.07018 -18.99220 -18.38387 -17.83285 -17.37030 -16.80134 -16.48573 -16.37161 -15.92075 -15.45104 -15.30481 -14.67699 -14.56247 -14.24034 -14.13405 -13.96690 -13.70253 -13.34588 -13.23870 -13.15450 -13.04758 -12.91410 -12.75617 -12.63615 -12.31429 -12.29014 -12.04687 -12.02564 -11.98257 -11.78774 -11.62883 -11.51310 -11.08375 -10.96414 -10.81585 -10.77368 -10.08662 -9.59316 -8.75935 -8.20302 -6.73218 1.40458 1.40706 1.54682 2.25909 2.55057 2.68524 3.15638 3.51748 3.56529 3.74948 3.79683 3.94583 4.11527 4.19975 4.27548 4.33893 4.41260 4.45898 4.50327 4.57573 4.58260 4.60251 4.73588 4.79917 4.82713 4.86302 4.90936 4.93962 4.95028 5.03765 5.06328 5.12094 5.21278 5.25373 5.30146 5.36324 5.42349 5.46664 5.53585 5.59874 5.66024 5.84176 5.91934 6.22721 6.43661 6.57959 6.97282 7.56326 8.59355 8.79171 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.004947 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.338868 B = 5658.371830 C = 5949.312453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.379 6.379 4 C 0.087 3.913 5 H 0.096 0.904 6 C -0.155 4.155 7 C 0.136 3.864 8 H 0.068 0.932 9 N -0.623 5.623 10 C 0.093 3.907 11 C 0.554 3.446 12 O -0.615 6.615 13 C -0.568 4.568 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.817 5.817 17 Si 0.982 3.018 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.251 1.251 21 C -0.084 4.084 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.103 4.103 25 C -0.138 4.138 26 C -0.087 4.087 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.264 -8.686 -1.100 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.298 6.298 4 C 0.029 3.971 5 H 0.114 0.886 6 C -0.194 4.194 7 C 0.031 3.969 8 H 0.086 0.914 9 N -0.357 5.357 10 C -0.049 4.049 11 C 0.360 3.640 12 O -0.501 6.501 13 C -0.604 4.604 14 H 0.102 0.898 15 C -0.180 4.180 16 N -0.447 5.447 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.174 1.174 21 C -0.086 4.086 22 C -0.103 4.103 23 C -0.176 4.176 24 C -0.140 4.140 25 C -0.175 4.175 26 C -0.125 4.125 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.792 -8.821 -0.646 17.235 hybrid contribution 1.008 0.633 0.003 1.190 sum -13.785 -8.188 -0.643 16.046 Atomic orbital electron populations 1.21735 0.92862 1.03155 1.02630 1.22706 0.96342 0.83399 1.00545 1.87935 1.19925 1.27364 1.94530 1.23365 0.81296 0.97038 0.95412 0.88597 1.23951 0.98151 0.99705 0.97546 1.21851 0.95606 0.84241 0.95223 0.91427 1.47565 1.22424 1.12773 1.52973 1.21761 0.92238 0.97960 0.92991 1.18264 0.79296 0.86902 0.79544 1.90514 1.46644 1.70612 1.42331 1.21480 1.07240 0.98132 1.33582 0.89799 1.26773 0.94590 1.03652 0.92952 1.70180 1.08294 1.38462 1.27777 0.85249 0.77883 0.76821 0.79816 1.19019 1.20183 1.17403 1.22432 0.95913 0.95564 0.94717 1.21009 0.95763 0.92253 1.01254 1.21868 1.00900 0.97814 0.97024 1.21316 0.97867 0.97295 0.97556 1.21707 0.99365 0.96172 1.00276 1.21296 0.98759 0.96487 0.95914 0.89380 0.92453 0.92234 0.92764 0.92968 0.88102 0.90313 0.94456 0.92369 0.89612 0.92057 0.90937 0.91796 0.92417 0.91090 0.91475 0.94705 0.93564 0.91964 0.91181 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 0.85 6.50 71.98 0.47 1.31 16 3 O -0.38 -9.34 9.50 -148.98 -1.41 -10.75 16 4 C 0.09 2.33 3.75 31.08 0.12 2.44 16 5 H 0.10 2.31 7.82 -2.39 -0.02 2.29 16 6 C -0.16 -4.46 6.94 31.23 0.22 -4.25 16 7 C 0.14 5.18 3.30 45.42 0.15 5.33 16 8 H 0.07 3.01 7.46 -2.39 -0.02 2.99 16 9 N -0.62 -27.04 1.72 -825.29 -1.42 -28.46 16 10 C 0.09 3.31 7.31 127.77 0.93 4.25 16 11 C 0.55 30.65 5.62 86.36 0.49 31.14 16 12 O -0.61 -38.98 12.29 -4.33 -0.05 -39.03 16 13 C -0.57 -31.41 8.65 24.83 0.21 -31.19 16 14 H 0.08 4.24 6.12 -2.91 -0.02 4.22 16 15 C 0.04 1.96 5.50 85.30 0.47 2.43 16 16 N -0.82 -49.47 11.83 21.84 0.26 -49.21 16 17 Si 0.98 41.29 29.56 68.60 2.03 43.31 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 21 C -0.08 -2.75 0.74 -52.10 -0.04 -2.78 16 22 C -0.07 -2.09 3.80 30.55 0.12 -1.97 16 23 C -0.14 -5.10 5.40 30.63 0.17 -4.94 16 24 C -0.10 -3.83 5.86 30.57 0.18 -3.65 16 25 C -0.14 -5.61 5.85 30.63 0.18 -5.43 16 26 C -0.09 -2.96 5.09 30.55 0.16 -2.80 16 27 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 2.78 5.61 -2.39 -0.01 2.77 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 2.16 6.15 -2.39 -0.01 2.15 16 36 H 0.09 2.54 3.58 -2.39 -0.01 2.53 16 37 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 38 H 0.07 2.20 4.53 -2.39 -0.01 2.19 16 39 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 40 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.07 3.16 3.50 -2.39 -0.01 3.15 16 42 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 3.22 4.89 -2.39 -0.01 3.21 16 46 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 Total: -1.00 -70.22 342.66 4.91 -65.31 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.96 Total: 30.37 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.55 Total: -11.54 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.16 Total: -77.67 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.47 Total: -49.79 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -70.22 4.91 -65.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364104567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.494 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds