Wall clock time and date at job start Tue Mar 31 2020 07:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46687 * 2 1 4 4 C 1.42902 * 113.99536 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.86413 * 20.34033 * 4 3 2 6 6 C 1.53843 * 113.63241 * 249.08437 * 4 3 2 7 7 C 1.53854 * 87.14448 * 270.63430 * 6 4 3 8 8 H 1.09005 * 113.62997 * 220.23843 * 7 6 4 9 9 N 1.46494 * 113.63384 * 89.36501 * 7 6 4 10 10 C 1.46508 * 119.99855 * 359.83415 * 9 7 6 11 11 C 1.34780 * 120.00386 * 179.83427 * 9 7 6 12 12 O 1.21681 * 119.99785 * 359.97438 * 11 9 7 13 13 C 1.46370 * 120.00146 * 180.02562 * 11 9 7 14 14 H 1.08005 * 120.00030 * 0.02562 * 13 11 9 15 15 C 1.40049 * 120.00295 * 179.97438 * 13 11 9 16 16 N 1.30676 * 119.99548 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 120.00282 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47161 * 90.00422 * 17 15 13 19 19 H 1.48499 * 109.47336 * 210.00396 * 17 15 13 20 20 H 1.48502 * 109.47408 * 330.00550 * 17 15 13 21 21 C 1.53414 * 113.62947 * 151.58811 * 4 3 2 22 22 C 1.52727 * 113.49525 * 334.65133 * 21 4 3 23 23 C 1.53142 * 109.23041 * 285.34031 * 22 21 4 24 24 C 1.52974 * 109.43408 * 302.16583 * 23 22 21 25 25 C 1.52968 * 109.69953 * 61.68860 * 24 23 22 26 26 C 1.52720 * 113.50194 * 203.93458 * 21 4 3 27 27 H 1.09000 * 109.47469 * 299.99439 * 1 2 3 28 28 H 1.09002 * 109.47771 * 59.99958 * 1 2 3 29 29 H 1.09009 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47303 * 120.00548 * 2 1 3 31 31 H 1.09006 * 109.46788 * 240.00447 * 2 1 3 32 32 H 1.08994 * 113.60755 * 25.19832 * 6 4 3 33 33 H 1.09004 * 113.60688 * 155.99208 * 6 4 3 34 34 H 1.09007 * 109.46651 * 95.51863 * 10 9 7 35 35 H 1.09000 * 109.47052 * 215.51810 * 10 9 7 36 36 H 1.08997 * 109.46739 * 335.51948 * 10 9 7 37 37 H 0.96997 * 119.99627 * 180.02562 * 16 15 13 38 38 H 1.08991 * 109.51119 * 45.26494 * 22 21 4 39 39 H 1.08997 * 109.51033 * 165.41891 * 22 21 4 40 40 H 1.08999 * 109.47788 * 182.18085 * 23 22 21 41 41 H 1.08995 * 109.48710 * 62.16113 * 23 22 21 42 42 H 1.08999 * 109.42833 * 301.61998 * 24 23 22 43 43 H 1.09002 * 109.39173 * 181.74152 * 24 23 22 44 44 H 1.09002 * 109.47408 * 178.32331 * 25 24 23 45 45 H 1.09002 * 109.47665 * 58.30287 * 25 24 23 46 46 H 1.08994 * 109.51913 * 194.58162 * 26 21 4 47 47 H 1.09001 * 109.50921 * 314.68328 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9275 0.5548 -0.3482 6 6 4.0053 2.0106 1.3173 7 6 3.8478 3.4151 0.7093 8 1 4.6803 4.0830 0.9310 9 7 2.5425 4.0258 0.9720 10 6 1.5354 3.2969 1.7471 11 6 2.2678 5.2583 0.5006 12 8 3.1044 5.8639 -0.1428 13 6 0.9637 5.8687 0.7636 14 1 0.2216 5.3316 1.3357 15 6 0.6785 7.1495 0.2742 16 7 1.5766 7.7995 -0.4176 17 14 -0.9860 7.9282 0.6092 18 1 -0.9264 8.6971 1.8784 19 1 -1.3387 8.8419 -0.5069 20 1 -2.0162 6.8647 0.7228 21 6 3.9465 2.7410 -0.6681 22 6 2.9827 3.3180 -1.7029 23 6 3.0289 2.4587 -2.9696 24 6 4.4615 2.4170 -3.5044 25 6 5.3816 1.7754 -2.4644 26 6 5.3773 2.6226 -1.1886 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.3639 1.8345 2.1808 33 1 5.0419 1.7242 1.4947 34 1 1.5891 3.6034 2.7918 35 1 0.5433 3.5190 1.3539 36 1 1.7245 2.2261 1.6724 37 1 1.3792 8.6868 -0.7562 38 1 1.9706 3.3162 -1.2985 39 1 3.2771 4.3392 -1.9449 40 1 2.3714 2.8892 -3.7250 41 1 2.6990 1.4468 -2.7348 42 1 4.8008 3.4318 -3.7119 43 1 4.4880 1.8308 -4.4230 44 1 6.3955 1.7204 -2.8608 45 1 5.0260 0.7709 -2.2349 46 1 5.7677 3.6159 -1.4100 47 1 6.0015 2.1464 -0.4325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364104568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:23 Heat of formation + Delta-G solvation = -62.998518 kcal Electronic energy + Delta-G solvation = -26780.722160 eV Core-core repulsion = 23350.211421 eV Total energy + Delta-G solvation = -3430.510738 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69507 -37.02858 -36.81516 -34.96798 -32.55904 -32.24006 -30.82133 -30.17808 -28.15677 -26.41659 -25.59458 -23.66448 -22.90886 -22.13283 -21.93932 -20.38089 -19.01325 -17.57601 -16.41895 -16.14909 -15.69132 -15.54218 -15.33976 -14.48748 -14.25843 -13.91157 -13.81211 -13.54277 -13.20068 -12.87571 -12.76623 -12.47292 -12.17820 -12.09677 -11.94777 -11.63623 -11.55500 -11.31137 -11.14583 -11.04847 -10.98216 -10.85877 -10.76806 -10.57414 -10.44430 -10.20901 -10.17497 -9.97546 -9.55305 -9.44049 -9.39872 -8.82173 -8.73178 -7.40900 -6.88990 -6.07711 -4.50678 3.19280 3.26213 3.29421 3.80555 4.17762 4.62176 4.72916 4.90063 4.96553 5.13131 5.18463 5.20861 5.25083 5.28776 5.43568 5.47286 5.58269 5.67506 5.73313 5.80894 5.93188 5.94230 5.95844 6.00907 6.03501 6.05876 6.13237 6.18527 6.24978 6.35796 6.41661 6.43838 6.47104 6.60539 6.62768 6.70922 6.82754 6.89045 6.94501 7.20594 7.43729 7.55684 7.61496 7.84410 8.31785 8.55736 9.14566 9.63440 10.71280 10.93010 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.006279 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.202915 B = 4458.155938 C = 5162.338565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.339 6.339 4 C 0.077 3.923 5 H 0.062 0.938 6 C -0.176 4.176 7 C 0.161 3.839 8 H 0.069 0.931 9 N -0.620 5.620 10 C 0.097 3.903 11 C 0.565 3.435 12 O -0.575 6.575 13 C -0.541 4.541 14 H 0.069 0.931 15 C 0.089 3.911 16 N -0.769 5.769 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.083 4.083 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.091 4.091 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.016 0.984 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.265 0.735 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -15.761 -0.614 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.258 6.258 4 C 0.019 3.981 5 H 0.080 0.920 6 C -0.214 4.214 7 C 0.055 3.945 8 H 0.087 0.913 9 N -0.357 5.357 10 C -0.047 4.047 11 C 0.370 3.630 12 O -0.457 6.457 13 C -0.578 4.578 14 H 0.087 0.913 15 C -0.130 4.130 16 N -0.398 5.398 17 Si 0.726 3.274 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.129 4.129 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.876 -15.084 -1.063 15.393 hybrid contribution -0.753 0.068 0.280 0.807 sum 2.123 -15.016 -0.783 15.186 Atomic orbital electron populations 1.21720 0.93926 1.01550 1.03509 1.22458 0.95522 0.85073 0.99240 1.88124 1.19506 1.24329 1.93805 1.23002 0.81540 0.97321 0.96234 0.92043 1.23883 1.01021 0.98183 0.98331 1.21358 0.88812 0.91496 0.92871 0.91340 1.47548 1.12117 1.17910 1.58131 1.21613 0.92952 0.96842 0.93268 1.18072 0.88438 0.77853 0.78631 1.90576 1.49802 1.61960 1.43410 1.21003 0.99112 1.01187 1.36449 0.91313 1.25693 0.97254 0.96878 0.93223 1.70030 1.32916 1.10839 1.26028 0.86475 0.83145 0.79368 0.78366 1.19894 1.20601 1.18986 1.22252 0.94873 0.94566 0.96807 1.21191 1.00006 0.98904 0.92370 1.21513 0.95436 0.99880 0.98243 1.21516 0.96111 1.00732 0.97224 1.21487 0.98874 0.98762 0.95881 1.21241 0.94695 1.00642 0.96340 0.91677 0.91774 0.91784 0.94031 0.94071 0.90325 0.89446 0.96519 0.92272 0.90955 0.92392 0.90460 0.90694 0.92938 0.93168 0.92004 0.93142 0.92591 0.92744 0.90979 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.27 16 2 C 0.05 0.65 6.50 37.16 0.24 0.89 16 3 O -0.34 -5.31 5.47 -35.23 -0.19 -5.50 16 4 C 0.08 1.16 3.39 -26.08 -0.09 1.07 16 5 H 0.06 0.81 7.10 -51.93 -0.37 0.44 16 6 C -0.18 -2.66 6.84 -25.85 -0.18 -2.84 16 7 C 0.16 3.19 3.48 -67.14 -0.23 2.96 16 8 H 0.07 1.49 8.05 -51.93 -0.42 1.07 16 9 N -0.62 -14.28 2.14 -174.68 -0.37 -14.66 16 10 C 0.10 1.93 8.30 59.85 0.50 2.43 16 11 C 0.56 16.00 6.28 -12.99 -0.08 15.92 16 12 O -0.58 -18.20 13.50 5.21 0.07 -18.13 16 13 C -0.54 -15.45 8.73 -35.63 -0.31 -15.76 16 14 H 0.07 1.84 6.12 -52.48 -0.32 1.52 16 15 C 0.09 2.50 5.50 -17.36 -0.10 2.41 16 16 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 17 Si 0.90 20.60 29.56 -169.99 -5.02 15.57 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 C -0.08 -1.45 0.73 -154.23 -0.11 -1.56 16 22 C -0.09 -1.77 3.50 -26.80 -0.09 -1.86 16 23 C -0.11 -1.86 5.85 -26.67 -0.16 -2.02 16 24 C -0.12 -1.69 5.86 -26.76 -0.16 -1.85 16 25 C -0.11 -1.46 5.84 -26.67 -0.16 -1.62 16 26 C -0.09 -1.37 5.03 -26.80 -0.13 -1.50 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.18 6.20 -51.93 -0.32 0.86 16 33 H 0.09 1.12 7.61 -51.93 -0.40 0.72 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 1.25 6.42 -51.93 -0.33 0.91 16 36 H 0.07 1.25 3.63 -51.93 -0.19 1.06 16 37 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 38 H 0.08 1.79 6.22 -51.93 -0.32 1.47 16 39 H 0.07 1.85 6.89 -51.93 -0.36 1.49 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.78 7.97 -51.93 -0.41 0.37 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 0.75 7.31 -51.93 -0.38 0.37 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -32.94 348.68 -8.27 -41.21 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.99 Total: 3.41 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.68 Total: -4.61 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.28 Total: -37.21 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.12 Total: -23.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.94 -8.27 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364104568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.789 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds