Wall clock time and date at job start Tue Mar 31 2020 07:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46687 * 2 1 4 4 C 1.42902 * 113.99536 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.86413 * 20.34033 * 4 3 2 6 6 C 1.53843 * 113.63241 * 249.08437 * 4 3 2 7 7 C 1.53854 * 87.14448 * 270.63430 * 6 4 3 8 8 H 1.09005 * 113.62997 * 220.23843 * 7 6 4 9 9 N 1.46494 * 113.63384 * 89.36501 * 7 6 4 10 10 C 1.46508 * 119.99855 * 359.83415 * 9 7 6 11 11 C 1.34780 * 120.00386 * 179.83427 * 9 7 6 12 12 O 1.21681 * 119.99785 * 359.97438 * 11 9 7 13 13 C 1.46370 * 120.00146 * 180.02562 * 11 9 7 14 14 H 1.08005 * 120.00030 * 0.02562 * 13 11 9 15 15 C 1.40049 * 120.00295 * 179.97438 * 13 11 9 16 16 N 1.30676 * 119.99548 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 120.00282 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47161 * 90.00422 * 17 15 13 19 19 H 1.48499 * 109.47336 * 210.00396 * 17 15 13 20 20 H 1.48502 * 109.47408 * 330.00550 * 17 15 13 21 21 C 1.53414 * 113.62947 * 151.58811 * 4 3 2 22 22 C 1.52727 * 113.49525 * 334.65133 * 21 4 3 23 23 C 1.53142 * 109.23041 * 285.34031 * 22 21 4 24 24 C 1.52974 * 109.43408 * 302.16583 * 23 22 21 25 25 C 1.52968 * 109.69953 * 61.68860 * 24 23 22 26 26 C 1.52720 * 113.50194 * 203.93458 * 21 4 3 27 27 H 1.09000 * 109.47469 * 299.99439 * 1 2 3 28 28 H 1.09002 * 109.47771 * 59.99958 * 1 2 3 29 29 H 1.09009 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47303 * 120.00548 * 2 1 3 31 31 H 1.09006 * 109.46788 * 240.00447 * 2 1 3 32 32 H 1.08994 * 113.60755 * 25.19832 * 6 4 3 33 33 H 1.09004 * 113.60688 * 155.99208 * 6 4 3 34 34 H 1.09007 * 109.46651 * 95.51863 * 10 9 7 35 35 H 1.09000 * 109.47052 * 215.51810 * 10 9 7 36 36 H 1.08997 * 109.46739 * 335.51948 * 10 9 7 37 37 H 0.96997 * 119.99627 * 180.02562 * 16 15 13 38 38 H 1.08991 * 109.51119 * 45.26494 * 22 21 4 39 39 H 1.08997 * 109.51033 * 165.41891 * 22 21 4 40 40 H 1.08999 * 109.47788 * 182.18085 * 23 22 21 41 41 H 1.08995 * 109.48710 * 62.16113 * 23 22 21 42 42 H 1.08999 * 109.42833 * 301.61998 * 24 23 22 43 43 H 1.09002 * 109.39173 * 181.74152 * 24 23 22 44 44 H 1.09002 * 109.47408 * 178.32331 * 25 24 23 45 45 H 1.09002 * 109.47665 * 58.30287 * 25 24 23 46 46 H 1.08994 * 109.51913 * 194.58162 * 26 21 4 47 47 H 1.09001 * 109.50921 * 314.68328 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9275 0.5548 -0.3482 6 6 4.0053 2.0106 1.3173 7 6 3.8478 3.4151 0.7093 8 1 4.6803 4.0830 0.9310 9 7 2.5425 4.0258 0.9720 10 6 1.5354 3.2969 1.7471 11 6 2.2678 5.2583 0.5006 12 8 3.1044 5.8639 -0.1428 13 6 0.9637 5.8687 0.7636 14 1 0.2216 5.3316 1.3357 15 6 0.6785 7.1495 0.2742 16 7 1.5766 7.7995 -0.4176 17 14 -0.9860 7.9282 0.6092 18 1 -0.9264 8.6971 1.8784 19 1 -1.3387 8.8419 -0.5069 20 1 -2.0162 6.8647 0.7228 21 6 3.9465 2.7410 -0.6681 22 6 2.9827 3.3180 -1.7029 23 6 3.0289 2.4587 -2.9696 24 6 4.4615 2.4170 -3.5044 25 6 5.3816 1.7754 -2.4644 26 6 5.3773 2.6226 -1.1886 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.3639 1.8345 2.1808 33 1 5.0419 1.7242 1.4947 34 1 1.5891 3.6034 2.7918 35 1 0.5433 3.5190 1.3539 36 1 1.7245 2.2261 1.6724 37 1 1.3792 8.6868 -0.7562 38 1 1.9706 3.3162 -1.2985 39 1 3.2771 4.3392 -1.9449 40 1 2.3714 2.8892 -3.7250 41 1 2.6990 1.4468 -2.7348 42 1 4.8008 3.4318 -3.7119 43 1 4.4880 1.8308 -4.4230 44 1 6.3955 1.7204 -2.8608 45 1 5.0260 0.7709 -2.2349 46 1 5.7677 3.6159 -1.4100 47 1 6.0015 2.1464 -0.4325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364104568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:22 Heat of formation + Delta-G solvation = -83.205989 kcal Electronic energy + Delta-G solvation = -26781.598421 eV Core-core repulsion = 23350.211421 eV Total energy + Delta-G solvation = -3431.387000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.09256 -38.88324 -38.04856 -36.49717 -34.58837 -34.17451 -31.88248 -31.41963 -29.50269 -28.44376 -27.35834 -25.13981 -24.07897 -23.26216 -23.24479 -22.03064 -20.57741 -19.01006 -18.27779 -17.77091 -17.25255 -17.00972 -16.68785 -16.15821 -15.76046 -15.37110 -15.18910 -14.90394 -14.65986 -14.27636 -14.17459 -13.98645 -13.52311 -13.37461 -13.28955 -13.10306 -13.04346 -12.84712 -12.78976 -12.63801 -12.59987 -12.22611 -12.12762 -12.02477 -11.96651 -11.81956 -11.64628 -11.56615 -10.94027 -10.89079 -10.79412 -10.70009 -10.05922 -9.63524 -8.78275 -8.23477 -6.77032 1.35576 1.37791 1.51810 2.23826 2.52634 2.70625 3.03017 3.56149 3.64939 3.75083 3.89475 3.98982 4.02994 4.21824 4.30468 4.33692 4.42689 4.46541 4.51142 4.60271 4.63930 4.68162 4.75979 4.79303 4.82299 4.87237 4.94033 4.94766 5.01820 5.07995 5.13527 5.15261 5.21874 5.25792 5.28061 5.36924 5.38849 5.42152 5.46551 5.48885 5.68208 5.73416 5.89686 6.22107 6.53407 6.66253 6.92933 7.58414 8.57872 8.77907 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.006279 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.202915 B = 4458.155938 C = 5162.338565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.093 3.907 5 H 0.101 0.899 6 C -0.153 4.153 7 C 0.128 3.872 8 H 0.034 0.966 9 N -0.619 5.619 10 C 0.102 3.898 11 C 0.551 3.449 12 O -0.623 6.623 13 C -0.571 4.571 14 H 0.081 0.919 15 C 0.030 3.970 16 N -0.822 5.822 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.252 1.252 21 C -0.085 4.085 22 C -0.073 4.073 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.090 4.090 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.021 0.979 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.270 0.730 38 H 0.038 0.962 39 H 0.011 0.989 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.038 0.962 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -19.629 0.044 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.289 6.289 4 C 0.034 3.966 5 H 0.118 0.882 6 C -0.191 4.191 7 C 0.022 3.978 8 H 0.052 0.948 9 N -0.353 5.353 10 C -0.040 4.040 11 C 0.356 3.644 12 O -0.510 6.510 13 C -0.608 4.608 14 H 0.099 0.901 15 C -0.184 4.184 16 N -0.452 5.452 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.175 1.175 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.143 4.143 24 C -0.155 4.155 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.057 0.943 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.647 -19.014 -0.377 19.201 hybrid contribution -0.670 1.271 0.078 1.439 sum 1.977 -17.743 -0.299 17.855 Atomic orbital electron populations 1.21745 0.93799 1.02956 1.02112 1.22706 0.95685 0.83419 1.00983 1.88097 1.19886 1.27113 1.93814 1.22879 0.81730 0.96949 0.94994 0.88170 1.23862 1.03324 0.93418 0.98469 1.21721 0.86032 0.93409 0.96596 0.94825 1.47309 1.13933 1.16815 1.57288 1.21699 0.91269 0.98400 0.92676 1.18343 0.88256 0.79441 0.78357 1.90527 1.51082 1.63928 1.45423 1.21492 0.99829 1.02269 1.37192 0.90128 1.26893 1.02075 0.97182 0.92263 1.70211 1.35972 1.11524 1.27510 0.85164 0.76965 0.78426 0.78640 1.18581 1.19797 1.17497 1.22305 0.96004 0.95953 0.94460 1.20898 0.98444 0.96536 0.95247 1.21446 0.97213 0.99735 0.95926 1.21519 0.94632 1.00230 0.99108 1.21477 0.99902 0.98943 0.93830 1.21261 0.93079 0.99881 0.98559 0.92655 0.93623 0.88950 0.91832 0.92548 0.89752 0.85975 0.96012 0.94029 0.87645 0.91993 0.94320 0.97053 0.94227 0.91029 0.94484 0.90219 0.90149 0.90184 0.94318 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.05 0.97 6.50 71.98 0.47 1.44 16 3 O -0.37 -10.75 5.47 -148.98 -0.82 -11.56 16 4 C 0.09 2.48 3.39 31.02 0.11 2.58 16 5 H 0.10 2.00 7.10 -2.39 -0.02 1.98 16 6 C -0.15 -4.19 6.84 31.17 0.21 -3.97 16 7 C 0.13 5.20 3.48 45.51 0.16 5.36 16 8 H 0.03 1.57 8.05 -2.38 -0.02 1.55 16 9 N -0.62 -29.84 2.14 -824.79 -1.76 -31.60 16 10 C 0.10 4.11 8.30 127.77 1.06 5.17 16 11 C 0.55 33.47 6.28 86.36 0.54 34.01 16 12 O -0.62 -42.98 13.50 -4.29 -0.06 -43.04 16 13 C -0.57 -34.33 8.73 24.83 0.22 -34.11 16 14 H 0.08 4.47 6.12 -2.91 -0.02 4.46 16 15 C 0.03 1.78 5.50 85.30 0.47 2.25 16 16 N -0.82 -52.64 11.83 21.84 0.26 -52.38 16 17 Si 0.99 43.54 29.56 68.60 2.03 45.57 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 21 C -0.09 -2.98 0.73 -52.00 -0.04 -3.02 16 22 C -0.07 -3.16 3.50 30.55 0.11 -3.05 16 23 C -0.11 -3.49 5.85 30.63 0.18 -3.31 16 24 C -0.12 -3.22 5.86 30.58 0.18 -3.04 16 25 C -0.10 -2.36 5.84 30.63 0.18 -2.18 16 26 C -0.09 -2.59 5.03 30.55 0.15 -2.44 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 2.24 6.20 -2.39 -0.01 2.23 16 33 H 0.12 2.54 7.61 -2.39 -0.02 2.52 16 34 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 35 H 0.04 1.79 6.42 -2.39 -0.02 1.78 16 36 H 0.11 3.50 3.63 -2.39 -0.01 3.50 16 37 H 0.27 15.77 8.29 -92.71 -0.77 15.00 16 38 H 0.04 1.91 6.22 -2.39 -0.01 1.90 16 39 H 0.01 0.59 6.89 -2.39 -0.02 0.57 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 2.07 7.97 -2.39 -0.02 2.05 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.47 7.38 -2.39 -0.02 1.46 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.09 2.00 7.31 -2.39 -0.02 1.98 16 Total: -1.00 -81.38 348.68 5.33 -76.05 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.94 Total: 23.47 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 4.73 Total: -6.51 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.50 Total: -83.99 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.87 Total: -54.60 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -81.38 5.33 -76.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364104568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.152 kcal (2) G-P(sol) polarization free energy of solvation -81.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds