Wall clock time and date at job start Tue Mar 31 2020 08:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99934 * 2 1 4 4 C 1.52998 * 109.47269 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47209 * 64.99798 * 4 3 2 6 6 C 1.46502 * 120.00115 * 264.08465 * 5 4 3 7 7 C 1.50698 * 109.46593 * 269.16213 * 6 5 4 8 8 H 1.07996 * 120.00560 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99470 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00117 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47000 * 59.99798 * 11 9 7 13 13 H 1.48501 * 109.47154 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47548 * 299.99978 * 11 9 7 15 15 C 1.34781 * 119.99721 * 84.07605 * 5 4 3 16 16 O 1.21279 * 120.00069 * 4.46701 * 15 5 4 17 17 C 1.50694 * 120.00054 * 184.46174 * 15 5 4 18 18 H 1.09008 * 109.47457 * 305.26107 * 17 15 5 19 19 C 1.53004 * 109.47092 * 65.25376 * 17 15 5 20 20 C 1.53007 * 109.46747 * 119.99883 * 19 17 15 21 21 C 1.52994 * 109.47447 * 300.00426 * 20 19 17 22 22 C 1.52997 * 109.47162 * 59.99691 * 21 20 19 23 23 C 1.52990 * 109.47553 * 185.25652 * 17 15 5 24 24 C 1.53000 * 109.47585 * 180.02562 * 23 17 15 25 25 C 1.52995 * 109.46917 * 60.00186 * 24 23 17 26 26 H 1.09007 * 109.47268 * 300.00130 * 1 2 3 27 27 H 1.08994 * 109.47285 * 60.00065 * 1 2 3 28 28 H 1.09005 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47441 * 60.00231 * 3 2 1 30 30 H 1.08998 * 109.47428 * 300.00205 * 3 2 1 31 31 H 1.09005 * 109.47164 * 304.99975 * 4 3 2 32 32 H 1.09000 * 109.47656 * 184.99944 * 4 3 2 33 33 H 1.08993 * 109.47169 * 29.15872 * 6 5 4 34 34 H 1.09004 * 109.46735 * 149.16324 * 6 5 4 35 35 H 0.97002 * 119.99839 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47815 * 240.00291 * 19 17 15 37 37 H 1.09000 * 109.47087 * 0.02562 * 19 17 15 38 38 H 1.09004 * 109.46836 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.46962 * 300.00120 * 21 20 19 40 40 H 1.09003 * 109.47292 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47429 * 240.00383 * 22 21 20 42 42 H 1.09002 * 109.46744 * 120.00023 * 22 21 20 43 43 H 1.09004 * 109.47058 * 59.99835 * 23 17 15 44 44 H 1.09002 * 109.47476 * 179.97438 * 24 23 17 45 45 H 1.08997 * 109.47036 * 299.99745 * 24 23 17 46 46 H 1.09007 * 109.46978 * 240.00088 * 25 24 23 47 47 H 1.08998 * 109.47286 * 120.00776 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2311 -0.8778 -1.3035 7 6 5.6777 -1.1448 -0.9761 8 1 6.3412 -0.3228 -0.7517 9 6 6.1545 -2.4385 -0.9641 10 7 5.3466 -3.4395 -1.2379 11 14 7.9476 -2.7694 -0.5589 12 1 8.2486 -2.2634 0.8044 13 1 8.2056 -4.2308 -0.6122 14 1 8.8142 -2.0770 -1.5462 15 6 4.1483 1.3193 -2.3538 16 8 4.0163 2.5233 -2.2908 17 6 4.5044 0.6680 -3.6653 18 1 5.3993 0.0588 -3.5373 19 6 3.3455 -0.2187 -4.1255 20 6 2.8372 0.2705 -5.4832 21 6 2.3537 1.7164 -5.3560 22 6 3.5125 2.6030 -4.8957 23 6 4.7686 1.7481 -4.7161 24 6 5.1294 1.0868 -6.0477 25 6 3.9702 0.2006 -6.5077 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8507 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 3.5949 -1.3858 -0.5789 34 1 4.0105 -1.2494 -2.3043 35 1 5.6818 -4.3497 -1.2291 36 1 3.6899 -1.2488 -4.2162 37 1 2.5374 -0.1684 -3.3957 38 1 2.0113 -0.3610 -5.8109 39 1 1.5458 1.7665 -4.6260 40 1 1.9911 2.0648 -6.3231 41 1 3.2550 3.0741 -3.9471 42 1 3.7007 3.3726 -5.6443 43 1 5.5942 2.3798 -4.3882 44 1 5.3172 1.8563 -6.7965 45 1 6.0242 0.4775 -5.9201 46 1 4.3143 -0.8297 -6.5985 47 1 3.6079 0.5492 -7.4748 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389303360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:36 Heat of formation + Delta-G solvation = -101.447590 kcal Electronic energy + Delta-G solvation = -26316.447068 eV Core-core repulsion = 22884.269053 eV Total energy + Delta-G solvation = -3432.178015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65245 -38.34315 -37.20184 -34.91327 -32.58788 -31.32283 -30.94675 -30.42979 -29.20716 -26.96317 -25.91697 -23.63693 -22.81468 -22.22778 -21.94232 -21.32301 -18.37308 -16.80391 -16.47378 -16.28874 -16.10325 -15.82286 -15.65060 -15.26913 -14.94739 -14.59259 -14.37573 -13.89061 -13.48344 -12.57932 -12.45066 -12.33032 -11.98566 -11.89707 -11.80993 -11.73472 -11.65721 -11.62848 -11.60265 -11.37745 -11.17080 -11.04269 -10.93975 -10.79776 -10.41751 -10.32682 -10.03521 -9.86420 -9.62621 -9.47437 -9.38835 -9.35257 -8.59444 -8.39898 -7.59429 -6.09554 -4.16099 3.27988 3.32854 3.35084 3.50480 3.97840 4.17740 4.40370 4.87762 4.98381 5.03554 5.23208 5.39199 5.42981 5.53200 5.57656 5.61413 5.64877 5.66250 5.71093 5.73491 5.75996 5.77291 5.79741 5.84360 5.88216 5.96840 6.01623 6.08236 6.26230 6.32348 6.39377 6.42653 6.51869 6.58664 6.66477 6.76002 6.79146 6.86611 6.92004 7.04666 7.41310 7.49408 7.68163 7.87428 8.18231 8.47912 8.88749 9.13692 9.50507 10.96763 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.007409 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.194037 B = 3778.483891 C = 5308.217818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.234 3.766 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.523 3.477 16 O -0.576 6.576 17 C -0.095 4.095 18 H 0.104 0.896 19 C -0.097 4.097 20 C -0.087 4.087 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.063 4.063 24 C -0.113 4.113 25 C -0.111 4.111 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 7.023 -5.452 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.115 3.885 7 C -0.577 4.577 8 H 0.075 0.925 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.313 3.687 16 O -0.459 6.459 17 C -0.116 4.116 18 H 0.123 0.877 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.147 4.147 22 C -0.163 4.163 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.148 4.148 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.975 7.224 -5.410 11.406 hybrid contribution 0.809 -0.247 0.360 0.919 sum -6.166 6.977 -5.050 10.593 Atomic orbital electron populations 1.22674 0.82240 1.02328 0.99154 1.88045 1.18579 1.27578 1.95199 1.23026 0.95457 0.84788 0.99665 1.21295 0.90816 0.99509 0.88590 1.48140 1.63942 1.11382 1.08155 1.19601 0.96059 0.73458 0.99427 1.21518 0.95284 0.92501 1.48378 0.92454 1.24907 0.97751 0.95991 0.95060 1.69923 1.35145 0.99273 1.48435 0.86637 0.85124 0.77087 0.79078 1.20246 1.21198 1.20191 1.20523 0.75897 0.86491 0.85818 1.90454 1.54573 1.14908 1.85956 1.21185 1.01039 0.97433 0.91954 0.87746 1.21507 0.97086 0.99123 0.95724 1.21055 0.97339 0.96413 0.95709 1.21515 0.98098 0.95048 1.00063 1.21833 0.94334 0.97234 1.02930 1.20757 0.98173 0.95618 0.93605 1.21550 0.98103 0.98697 0.96736 1.21503 0.95771 0.99861 0.97703 0.94756 0.94685 0.89914 0.93405 0.93380 0.89568 0.89831 0.93972 0.93508 0.92626 0.90606 0.91761 0.91629 0.92798 0.92947 0.88518 0.93414 0.91309 0.92399 0.91983 0.92011 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.71 10.26 -35.23 -0.36 -7.07 16 3 C 0.05 0.80 6.24 37.16 0.23 1.04 16 4 C 0.12 2.29 5.77 -4.04 -0.02 2.27 16 5 N -0.59 -12.50 2.39 -175.06 -0.42 -12.92 16 6 C 0.23 5.65 4.62 -5.19 -0.02 5.63 16 7 C -0.54 -14.20 9.18 -34.44 -0.32 -14.51 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 11 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.52 10.85 6.41 -10.99 -0.07 10.78 16 16 O -0.58 -12.42 13.13 5.56 0.07 -12.34 16 17 C -0.10 -1.78 1.76 -91.78 -0.16 -1.94 16 18 H 0.10 2.17 7.66 -51.92 -0.40 1.77 16 19 C -0.10 -1.68 3.63 -26.73 -0.10 -1.78 16 20 C -0.09 -1.26 3.19 -90.66 -0.29 -1.55 16 21 C -0.11 -1.57 5.71 -26.74 -0.15 -1.72 16 22 C -0.13 -1.98 5.39 -26.73 -0.14 -2.12 16 23 C -0.06 -1.03 2.39 -90.62 -0.22 -1.25 16 24 C -0.11 -1.59 5.71 -26.73 -0.15 -1.74 16 25 C -0.11 -1.48 5.70 -26.78 -0.15 -1.63 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 32 H 0.08 1.51 7.55 -51.93 -0.39 1.12 16 33 H 0.04 1.11 7.71 -51.93 -0.40 0.71 16 34 H 0.05 1.15 4.58 -51.93 -0.24 0.91 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.39 7.50 -51.93 -0.39 1.00 16 37 H 0.06 1.20 7.30 -51.93 -0.38 0.82 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.75 5.32 -51.93 -0.28 1.48 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -28.63 357.85 -8.51 -37.14 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.35 Total: 3.29 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.55 Total: -5.31 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.32 Total: -36.91 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.29 Total: -19.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.63 -8.51 -37.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389303360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.309 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds