Wall clock time and date at job start Tue Mar 31 2020 08:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99934 * 2 1 4 4 C 1.52998 * 109.47269 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47209 * 64.99798 * 4 3 2 6 6 C 1.46502 * 120.00115 * 264.08465 * 5 4 3 7 7 C 1.50698 * 109.46593 * 269.16213 * 6 5 4 8 8 H 1.07996 * 120.00560 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99470 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00117 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47000 * 59.99798 * 11 9 7 13 13 H 1.48501 * 109.47154 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47548 * 299.99978 * 11 9 7 15 15 C 1.34781 * 119.99721 * 84.07605 * 5 4 3 16 16 O 1.21279 * 120.00069 * 4.46701 * 15 5 4 17 17 C 1.50694 * 120.00054 * 184.46174 * 15 5 4 18 18 H 1.09008 * 109.47457 * 305.26107 * 17 15 5 19 19 C 1.53004 * 109.47092 * 65.25376 * 17 15 5 20 20 C 1.53007 * 109.46747 * 119.99883 * 19 17 15 21 21 C 1.52994 * 109.47447 * 300.00426 * 20 19 17 22 22 C 1.52997 * 109.47162 * 59.99691 * 21 20 19 23 23 C 1.52990 * 109.47553 * 185.25652 * 17 15 5 24 24 C 1.53000 * 109.47585 * 180.02562 * 23 17 15 25 25 C 1.52995 * 109.46917 * 60.00186 * 24 23 17 26 26 H 1.09007 * 109.47268 * 300.00130 * 1 2 3 27 27 H 1.08994 * 109.47285 * 60.00065 * 1 2 3 28 28 H 1.09005 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47441 * 60.00231 * 3 2 1 30 30 H 1.08998 * 109.47428 * 300.00205 * 3 2 1 31 31 H 1.09005 * 109.47164 * 304.99975 * 4 3 2 32 32 H 1.09000 * 109.47656 * 184.99944 * 4 3 2 33 33 H 1.08993 * 109.47169 * 29.15872 * 6 5 4 34 34 H 1.09004 * 109.46735 * 149.16324 * 6 5 4 35 35 H 0.97002 * 119.99839 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47815 * 240.00291 * 19 17 15 37 37 H 1.09000 * 109.47087 * 0.02562 * 19 17 15 38 38 H 1.09004 * 109.46836 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.46962 * 300.00120 * 21 20 19 40 40 H 1.09003 * 109.47292 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47429 * 240.00383 * 22 21 20 42 42 H 1.09002 * 109.46744 * 120.00023 * 22 21 20 43 43 H 1.09004 * 109.47058 * 59.99835 * 23 17 15 44 44 H 1.09002 * 109.47476 * 179.97438 * 24 23 17 45 45 H 1.08997 * 109.47036 * 299.99745 * 24 23 17 46 46 H 1.09007 * 109.46978 * 240.00088 * 25 24 23 47 47 H 1.08998 * 109.47286 * 120.00776 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2311 -0.8778 -1.3035 7 6 5.6777 -1.1448 -0.9761 8 1 6.3412 -0.3228 -0.7517 9 6 6.1545 -2.4385 -0.9641 10 7 5.3466 -3.4395 -1.2379 11 14 7.9476 -2.7694 -0.5589 12 1 8.2486 -2.2634 0.8044 13 1 8.2056 -4.2308 -0.6122 14 1 8.8142 -2.0770 -1.5462 15 6 4.1483 1.3193 -2.3538 16 8 4.0163 2.5233 -2.2908 17 6 4.5044 0.6680 -3.6653 18 1 5.3993 0.0588 -3.5373 19 6 3.3455 -0.2187 -4.1255 20 6 2.8372 0.2705 -5.4832 21 6 2.3537 1.7164 -5.3560 22 6 3.5125 2.6030 -4.8957 23 6 4.7686 1.7481 -4.7161 24 6 5.1294 1.0868 -6.0477 25 6 3.9702 0.2006 -6.5077 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8507 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 3.5949 -1.3858 -0.5789 34 1 4.0105 -1.2494 -2.3043 35 1 5.6818 -4.3497 -1.2291 36 1 3.6899 -1.2488 -4.2162 37 1 2.5374 -0.1684 -3.3957 38 1 2.0113 -0.3610 -5.8109 39 1 1.5458 1.7665 -4.6260 40 1 1.9911 2.0648 -6.3231 41 1 3.2550 3.0741 -3.9471 42 1 3.7007 3.3726 -5.6443 43 1 5.5942 2.3798 -4.3882 44 1 5.3172 1.8563 -6.7965 45 1 6.0242 0.4775 -5.9201 46 1 4.3143 -0.8297 -6.5985 47 1 3.6079 0.5492 -7.4748 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389303360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:35 Heat of formation + Delta-G solvation = -116.529399 kcal Electronic energy + Delta-G solvation = -26317.101064 eV Core-core repulsion = 22884.269053 eV Total energy + Delta-G solvation = -3432.832012 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08006 -39.80687 -38.57831 -36.67101 -34.57636 -32.77707 -32.21043 -31.57778 -30.72826 -28.82124 -27.15500 -25.25948 -24.53977 -23.45312 -23.31894 -22.62989 -19.98078 -18.65610 -18.10767 -17.80499 -17.38637 -17.17542 -17.04700 -16.66640 -16.42986 -16.23737 -15.77613 -15.43610 -14.93294 -14.25494 -13.94043 -13.80513 -13.57717 -13.39564 -13.21694 -12.95589 -12.93012 -12.89862 -12.86675 -12.81541 -12.74112 -12.66758 -12.48309 -12.39616 -12.14795 -11.87891 -11.68031 -11.48912 -11.13762 -10.72759 -10.66937 -10.63146 -10.54945 -10.06076 -9.36635 -8.16614 -6.31229 1.41255 1.41482 1.49624 1.82758 2.32302 2.47100 2.91988 3.12374 3.60741 3.68439 3.78242 4.04054 4.14106 4.23739 4.32185 4.36338 4.39861 4.45532 4.46863 4.51115 4.53131 4.54140 4.57119 4.60116 4.64237 4.72069 4.78167 4.82203 4.87636 4.96168 5.06325 5.15926 5.21244 5.24234 5.33166 5.38215 5.43938 5.49463 5.53463 5.61939 5.69400 5.70567 5.93412 6.12471 6.27054 6.64276 6.87561 7.34983 7.47334 8.88275 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.007409 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.194037 B = 3778.483891 C = 5308.217818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.059 3.941 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.256 3.744 7 C -0.550 4.550 8 H 0.047 0.953 9 C 0.023 3.977 10 N -0.916 5.916 11 Si 0.953 3.047 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.272 1.272 15 C 0.518 3.482 16 O -0.584 6.584 17 C -0.093 4.093 18 H 0.077 0.923 19 C -0.090 4.090 20 C -0.083 4.083 21 C -0.105 4.105 22 C -0.122 4.122 23 C -0.062 4.062 24 C -0.110 4.110 25 C -0.108 4.108 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.015 0.985 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 7.699 -6.830 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.019 4.019 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.135 3.865 7 C -0.589 4.589 8 H 0.066 0.934 9 C -0.178 4.178 10 N -0.555 5.555 11 Si 0.778 3.222 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.197 1.197 15 C 0.308 3.692 16 O -0.467 6.467 17 C -0.114 4.114 18 H 0.095 0.905 19 C -0.128 4.128 20 C -0.102 4.102 21 C -0.143 4.143 22 C -0.159 4.159 23 C -0.081 4.081 24 C -0.148 4.148 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.295 7.919 -6.781 12.724 hybrid contribution 0.864 -0.437 0.856 1.292 sum -6.431 7.482 -5.925 11.509 Atomic orbital electron populations 1.22876 0.79939 1.03393 1.00611 1.87995 1.21212 1.28273 1.95473 1.22889 0.93548 0.84705 1.00733 1.21461 0.92897 0.99228 0.87270 1.48129 1.64332 1.10380 1.09379 1.19139 0.94444 0.74945 0.97966 1.21705 0.96159 0.92494 1.48521 0.93442 1.25620 1.01628 0.95729 0.94796 1.70019 1.36860 0.99619 1.49047 0.85686 0.80395 0.77198 0.78872 1.19910 1.20424 1.19694 1.20890 0.75548 0.86452 0.86290 1.90450 1.54980 1.15115 1.86188 1.21185 1.00268 0.98042 0.91943 0.90473 1.21409 0.95865 0.98056 0.97430 1.21070 0.98346 0.96843 0.93922 1.21494 0.97115 0.94406 1.01251 1.21747 0.94313 0.97677 1.02197 1.20779 0.98299 0.94901 0.94164 1.21548 0.98258 0.99280 0.95675 1.21511 0.94797 0.99817 0.98402 0.92431 0.93980 0.89159 0.90185 0.94188 0.90462 0.89289 0.96679 0.94209 0.92401 0.92244 0.93675 0.89980 0.93777 0.90021 0.91335 0.91295 0.92744 0.90010 0.92600 0.92119 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.78 10.26 -148.98 -1.53 -16.31 16 3 C 0.06 1.94 6.24 71.98 0.45 2.39 16 4 C 0.11 4.43 5.77 86.38 0.50 4.93 16 5 N -0.59 -26.28 2.39 -826.15 -1.97 -28.26 16 6 C 0.26 12.94 4.62 85.63 0.40 13.33 16 7 C -0.55 -29.95 9.18 25.60 0.23 -29.71 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 9 C 0.02 1.23 5.46 84.66 0.46 1.70 16 10 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 11 Si 0.95 43.00 29.54 68.60 2.03 45.02 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 C 0.52 22.20 6.41 87.65 0.56 22.76 16 16 O -0.58 -25.69 13.13 -3.03 -0.04 -25.73 16 17 C -0.09 -3.59 1.76 -11.54 -0.02 -3.61 16 18 H 0.08 3.37 7.66 -2.38 -0.02 3.36 16 19 C -0.09 -3.18 3.63 30.60 0.11 -3.07 16 20 C -0.08 -2.27 3.19 -10.82 -0.03 -2.30 16 21 C -0.11 -2.76 5.71 30.59 0.17 -2.59 16 22 C -0.12 -3.65 5.39 30.59 0.16 -3.48 16 23 C -0.06 -2.02 2.39 -10.80 -0.03 -2.05 16 24 C -0.11 -2.87 5.71 30.59 0.17 -2.70 16 25 C -0.11 -2.58 5.70 30.56 0.17 -2.40 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 3.07 8.03 -2.38 -0.02 3.06 16 32 H 0.09 3.29 7.55 -2.39 -0.02 3.27 16 33 H 0.02 0.84 7.71 -2.39 -0.02 0.82 16 34 H 0.04 2.06 4.58 -2.38 -0.01 2.05 16 35 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.06 2.27 7.50 -2.39 -0.02 2.25 16 37 H 0.04 1.74 7.30 -2.39 -0.02 1.73 16 38 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.07 2.46 5.32 -2.39 -0.01 2.45 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -62.54 357.85 4.26 -58.27 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.92 Total: 23.44 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 4.57 Total: -4.85 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.69 Total: -79.85 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.57 Total: -42.05 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -62.54 4.26 -58.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389303360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.257 kcal (2) G-P(sol) polarization free energy of solvation -62.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds