Wall clock time and date at job start Tue Mar 31 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.33361 * 2 1 4 4 O 1.44519 * 110.49632 * 122.21072 * 2 1 3 5 5 C 1.44422 * 105.22697 * 159.28944 * 4 2 1 6 6 H 1.09004 * 110.37241 * 78.52505 * 5 4 2 7 7 C 1.53001 * 110.37121 * 200.74595 * 5 4 2 8 8 C 1.54470 * 104.90078 * 319.63806 * 5 4 2 9 9 H 1.09004 * 110.51346 * 142.70935 * 8 5 4 10 10 C 1.53008 * 110.51034 * 265.27673 * 8 5 4 11 11 C 1.54483 * 110.37058 * 237.74944 * 2 1 3 12 12 H 1.08997 * 110.62808 * 335.78737 * 11 2 1 13 13 C 1.50703 * 110.50643 * 98.43155 * 11 2 1 14 14 O 1.21277 * 120.00431 * 19.95624 * 13 11 2 15 15 N 1.34782 * 119.99481 * 199.94563 * 13 11 2 16 16 C 1.46921 * 120.63366 * 4.92969 * 15 13 11 17 17 C 1.52764 * 109.00828 * 233.57900 * 16 15 13 18 18 C 1.53042 * 109.38213 * 305.58789 * 17 16 15 19 19 C 1.50700 * 109.45890 * 181.25819 * 18 17 16 20 20 H 1.07994 * 120.00453 * 239.93035 * 19 18 17 21 21 C 1.37875 * 119.99643 * 59.93060 * 19 18 17 22 22 N 1.31514 * 120.00551 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47056 * 90.00532 * 23 21 19 25 25 H 1.48497 * 109.47060 * 209.99918 * 23 21 19 26 26 H 1.48490 * 109.47409 * 330.00399 * 23 21 19 27 27 C 1.53036 * 109.53952 * 61.23864 * 18 17 16 28 28 C 1.46930 * 120.62500 * 185.20449 * 15 13 11 29 29 H 1.09002 * 109.47324 * 187.23929 * 1 2 3 30 30 H 1.09005 * 109.46440 * 307.23328 * 1 2 3 31 31 H 1.08996 * 109.47464 * 67.22973 * 1 2 3 32 32 H 1.09000 * 109.46839 * 177.04720 * 7 5 4 33 33 H 1.09005 * 109.47078 * 57.05200 * 7 5 4 34 34 H 1.08997 * 109.47574 * 297.05470 * 7 5 4 35 35 H 1.09000 * 109.46896 * 58.54961 * 10 8 5 36 36 H 1.09002 * 109.47188 * 178.54553 * 10 8 5 37 37 H 1.08997 * 109.47082 * 298.54519 * 10 8 5 38 38 H 1.09004 * 109.58436 * 353.41441 * 16 15 13 39 39 H 1.09001 * 109.59017 * 113.83710 * 16 15 13 40 40 H 1.08994 * 109.56305 * 185.54862 * 17 16 15 41 41 H 1.08996 * 109.38402 * 65.51556 * 17 16 15 42 42 H 1.08998 * 109.44987 * 301.22262 * 18 17 16 43 43 H 0.96997 * 120.00510 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.50160 * 178.68011 * 27 18 17 45 45 H 1.09012 * 109.52479 * 58.60197 * 27 18 17 46 46 H 1.09008 * 109.58327 * 246.15669 * 28 15 13 47 47 H 1.08997 * 109.59125 * 6.58364 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0360 -0.7216 1.1454 5 6 3.3898 -1.0846 0.7971 6 1 4.0553 -0.2301 0.9197 7 6 3.8652 -2.2565 1.6584 8 6 3.3193 -1.5027 -0.6883 9 1 4.2126 -1.1749 -1.2201 10 6 3.1499 -3.0184 -0.8112 11 6 2.0677 -0.7728 -1.2248 12 1 1.3292 -1.4915 -1.5799 13 6 2.4455 0.1824 -2.3275 14 8 2.6556 1.3495 -2.0734 15 7 2.5501 -0.2605 -3.5962 16 6 2.1950 -1.6447 -3.9376 17 6 3.3695 -2.2941 -4.6673 18 6 3.7611 -1.4307 -5.8687 19 6 4.8995 -2.0855 -6.6077 20 1 5.8399 -1.5666 -6.7202 21 6 4.7405 -3.3473 -7.1403 22 7 3.5955 -3.9796 -7.0029 23 14 6.1514 -4.1588 -8.0570 24 1 6.9800 -4.9371 -7.1015 25 1 5.6077 -5.0694 -9.0964 26 1 6.9881 -3.1152 -8.7018 27 6 4.1974 -0.0464 -5.3836 28 6 3.0271 0.6302 -4.6630 29 1 -0.3634 -1.0195 0.1295 30 1 -0.3632 0.6219 0.8183 31 1 -0.3634 0.3977 -0.9475 32 1 4.8675 -2.5521 1.3482 33 1 3.1836 -3.0981 1.5349 34 1 3.8831 -1.9541 2.7054 35 1 2.2423 -3.3258 -0.2918 36 1 3.0763 -3.2916 -1.8639 37 1 4.0104 -3.5174 -0.3656 38 1 1.9796 -2.2021 -3.0259 39 1 1.3187 -1.6479 -4.5859 40 1 3.0812 -3.2873 -5.0115 41 1 4.2170 -2.3767 -3.9869 42 1 2.9057 -1.3285 -6.5364 43 1 3.4835 -4.8671 -7.3779 44 1 4.4985 0.5603 -6.2377 45 1 5.0373 -0.1492 -4.6963 46 1 2.2200 0.8162 -5.3717 47 1 3.3605 1.5732 -4.2299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397311692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:41 Heat of formation + Delta-G solvation = -99.402863 kcal Electronic energy + Delta-G solvation = -25866.956335 eV Core-core repulsion = 22434.866986 eV Total energy + Delta-G solvation = -3432.089349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77281 -38.84166 -36.82262 -34.06971 -33.48596 -32.80392 -31.17339 -30.15166 -29.05740 -27.57321 -26.07367 -24.09305 -23.07474 -22.45257 -21.45760 -20.07053 -19.73930 -18.32751 -17.30625 -16.53034 -16.18364 -15.51564 -15.36392 -14.99703 -14.59356 -14.37222 -13.91388 -13.78983 -13.25966 -13.08699 -12.85990 -12.79050 -12.53788 -12.46194 -12.32626 -12.19396 -11.96408 -11.83159 -11.68655 -11.45630 -11.31515 -10.98127 -10.78353 -10.69396 -10.62983 -10.52269 -10.42595 -10.14709 -9.77967 -9.62283 -9.37276 -9.23194 -8.95938 -8.43195 -8.06495 -6.08064 -4.14244 2.84342 3.24586 3.32131 3.35170 3.36681 3.77718 4.36754 4.48605 4.56643 4.72153 4.86971 5.05897 5.13189 5.21989 5.26928 5.31666 5.41593 5.46693 5.48173 5.56601 5.67556 5.72345 5.78944 5.83073 5.89432 5.92286 6.00143 6.02279 6.04400 6.09481 6.13522 6.15438 6.22463 6.32863 6.40906 6.60253 6.82408 6.88163 6.98042 7.08191 7.21419 7.60981 7.85757 7.86457 7.98397 8.34831 8.47495 8.89136 9.51231 10.97434 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.004465 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.309925 B = 6270.093872 C = 6962.868141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.089 0.911 4 O -0.368 6.368 5 C 0.077 3.923 6 H 0.068 0.932 7 C -0.147 4.147 8 C -0.105 4.105 9 H 0.086 0.914 10 C -0.148 4.148 11 C -0.138 4.138 12 H 0.106 0.894 13 C 0.520 3.480 14 O -0.558 6.558 15 N -0.595 5.595 16 C 0.098 3.902 17 C -0.123 4.123 18 C 0.049 3.951 19 C -0.512 4.512 20 H 0.054 0.946 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.123 4.123 28 C 0.111 3.889 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 2.594 12.983 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.106 0.894 4 O -0.288 6.288 5 C 0.019 3.981 6 H 0.086 0.914 7 C -0.204 4.204 8 C -0.124 4.124 9 H 0.105 0.895 10 C -0.205 4.205 11 C -0.159 4.159 12 H 0.124 0.876 13 C 0.308 3.692 14 O -0.437 6.437 15 N -0.327 5.327 16 C -0.024 4.024 17 C -0.161 4.161 18 C 0.030 3.970 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.138 4.138 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.161 4.161 28 C -0.011 4.011 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.289 2.977 13.231 14.224 hybrid contribution 0.890 -0.571 -0.908 1.394 sum -3.399 2.406 12.323 13.008 Atomic orbital electron populations 1.21789 0.93083 1.02761 1.02487 1.22924 0.95111 0.96318 0.83064 0.89369 1.89116 1.26983 1.74831 1.37824 1.22967 0.84840 0.97203 0.93101 0.91388 1.21890 1.01404 0.97620 0.99469 1.22398 0.97265 0.96811 0.95912 0.89519 1.21985 1.02173 0.93398 1.02903 1.22823 0.99574 0.98121 0.95403 0.87576 1.20210 0.77303 0.88279 0.83414 1.90622 1.52217 1.18081 1.82808 1.48218 1.63726 1.13550 1.07196 1.22095 1.00052 0.80486 0.99779 1.21936 0.94280 1.02948 0.96970 1.18631 0.96657 0.88988 0.92704 1.21194 0.98870 1.00923 1.34024 0.92729 1.24944 0.95606 0.97263 0.96034 1.69825 1.23652 1.13816 1.45784 0.86628 0.82544 0.79369 0.79676 1.20727 1.21228 1.19962 1.22010 0.96010 0.99416 0.98687 1.21719 0.97433 0.93275 0.88678 0.91751 0.91786 0.91204 0.91064 0.91199 0.92206 0.92111 0.91339 0.91680 0.91069 0.91959 0.87706 0.94228 0.95465 0.92953 0.92102 0.93033 0.92155 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.53 37.16 0.35 -1.28 16 2 C 0.08 1.14 3.39 -25.95 -0.09 1.05 16 3 H 0.09 1.35 6.81 -51.93 -0.35 1.00 16 4 O -0.37 -5.07 11.05 -35.23 -0.39 -5.46 16 5 C 0.08 0.95 3.83 -25.96 -0.10 0.85 16 6 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.15 -1.47 8.39 37.16 0.31 -1.15 16 8 C -0.10 -1.37 3.23 -89.06 -0.29 -1.66 16 9 H 0.09 1.26 7.73 -51.93 -0.40 0.86 16 10 C -0.15 -1.73 7.50 37.16 0.28 -1.45 16 11 C -0.14 -1.93 1.82 -90.20 -0.16 -2.09 16 12 H 0.11 1.38 5.80 -51.93 -0.30 1.08 16 13 C 0.52 8.87 6.71 -10.98 -0.07 8.79 16 14 O -0.56 -10.91 14.98 5.56 0.08 -10.83 16 15 N -0.60 -10.39 2.98 -173.02 -0.52 -10.91 16 16 C 0.10 1.68 6.25 -3.93 -0.02 1.65 16 17 C -0.12 -2.58 5.14 -26.83 -0.14 -2.72 16 18 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 19 C -0.51 -13.30 8.56 -34.44 -0.29 -13.60 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 22 N -0.89 -23.83 11.30 55.43 0.63 -23.20 16 23 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 28 C 0.11 2.00 6.42 -3.71 -0.02 1.97 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.63 7.82 -51.93 -0.41 0.22 16 33 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 36 H 0.07 0.88 6.63 -51.93 -0.34 0.54 16 37 H 0.06 0.68 6.82 -51.93 -0.35 0.33 16 38 H 0.07 1.06 3.65 -51.93 -0.19 0.87 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 47 H 0.08 1.40 7.04 -51.93 -0.37 1.03 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -28.15 352.77 -8.53 -36.68 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.96 Total: 2.73 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.68 Total: -9.76 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.11 Total: -34.11 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.31 Total: -16.29 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.15 -8.53 -36.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397311692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.720 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds