Wall clock time and date at job start Tue Mar 31 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.33361 * 2 1 4 4 O 1.44519 * 110.49632 * 122.21072 * 2 1 3 5 5 C 1.44422 * 105.22697 * 159.28944 * 4 2 1 6 6 H 1.09004 * 110.37241 * 78.52505 * 5 4 2 7 7 C 1.53001 * 110.37121 * 200.74595 * 5 4 2 8 8 C 1.54470 * 104.90078 * 319.63806 * 5 4 2 9 9 H 1.09004 * 110.51346 * 142.70935 * 8 5 4 10 10 C 1.53008 * 110.51034 * 265.27673 * 8 5 4 11 11 C 1.54483 * 110.37058 * 237.74944 * 2 1 3 12 12 H 1.08997 * 110.62808 * 335.78737 * 11 2 1 13 13 C 1.50703 * 110.50643 * 98.43155 * 11 2 1 14 14 O 1.21277 * 120.00431 * 19.95624 * 13 11 2 15 15 N 1.34782 * 119.99481 * 199.94563 * 13 11 2 16 16 C 1.46921 * 120.63366 * 4.92969 * 15 13 11 17 17 C 1.52764 * 109.00828 * 233.57900 * 16 15 13 18 18 C 1.53042 * 109.38213 * 305.58789 * 17 16 15 19 19 C 1.50700 * 109.45890 * 181.25819 * 18 17 16 20 20 H 1.07994 * 120.00453 * 239.93035 * 19 18 17 21 21 C 1.37875 * 119.99643 * 59.93060 * 19 18 17 22 22 N 1.31514 * 120.00551 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47056 * 90.00532 * 23 21 19 25 25 H 1.48497 * 109.47060 * 209.99918 * 23 21 19 26 26 H 1.48490 * 109.47409 * 330.00399 * 23 21 19 27 27 C 1.53036 * 109.53952 * 61.23864 * 18 17 16 28 28 C 1.46930 * 120.62500 * 185.20449 * 15 13 11 29 29 H 1.09002 * 109.47324 * 187.23929 * 1 2 3 30 30 H 1.09005 * 109.46440 * 307.23328 * 1 2 3 31 31 H 1.08996 * 109.47464 * 67.22973 * 1 2 3 32 32 H 1.09000 * 109.46839 * 177.04720 * 7 5 4 33 33 H 1.09005 * 109.47078 * 57.05200 * 7 5 4 34 34 H 1.08997 * 109.47574 * 297.05470 * 7 5 4 35 35 H 1.09000 * 109.46896 * 58.54961 * 10 8 5 36 36 H 1.09002 * 109.47188 * 178.54553 * 10 8 5 37 37 H 1.08997 * 109.47082 * 298.54519 * 10 8 5 38 38 H 1.09004 * 109.58436 * 353.41441 * 16 15 13 39 39 H 1.09001 * 109.59017 * 113.83710 * 16 15 13 40 40 H 1.08994 * 109.56305 * 185.54862 * 17 16 15 41 41 H 1.08996 * 109.38402 * 65.51556 * 17 16 15 42 42 H 1.08998 * 109.44987 * 301.22262 * 18 17 16 43 43 H 0.96997 * 120.00510 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.50160 * 178.68011 * 27 18 17 45 45 H 1.09012 * 109.52479 * 58.60197 * 27 18 17 46 46 H 1.09008 * 109.58327 * 246.15669 * 28 15 13 47 47 H 1.08997 * 109.59125 * 6.58364 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0360 -0.7216 1.1454 5 6 3.3898 -1.0846 0.7971 6 1 4.0553 -0.2301 0.9197 7 6 3.8652 -2.2565 1.6584 8 6 3.3193 -1.5027 -0.6883 9 1 4.2126 -1.1749 -1.2201 10 6 3.1499 -3.0184 -0.8112 11 6 2.0677 -0.7728 -1.2248 12 1 1.3292 -1.4915 -1.5799 13 6 2.4455 0.1824 -2.3275 14 8 2.6556 1.3495 -2.0734 15 7 2.5501 -0.2605 -3.5962 16 6 2.1950 -1.6447 -3.9376 17 6 3.3695 -2.2941 -4.6673 18 6 3.7611 -1.4307 -5.8687 19 6 4.8995 -2.0855 -6.6077 20 1 5.8399 -1.5666 -6.7202 21 6 4.7405 -3.3473 -7.1403 22 7 3.5955 -3.9796 -7.0029 23 14 6.1514 -4.1588 -8.0570 24 1 6.9800 -4.9371 -7.1015 25 1 5.6077 -5.0694 -9.0964 26 1 6.9881 -3.1152 -8.7018 27 6 4.1974 -0.0464 -5.3836 28 6 3.0271 0.6302 -4.6630 29 1 -0.3634 -1.0195 0.1295 30 1 -0.3632 0.6219 0.8183 31 1 -0.3634 0.3977 -0.9475 32 1 4.8675 -2.5521 1.3482 33 1 3.1836 -3.0981 1.5349 34 1 3.8831 -1.9541 2.7054 35 1 2.2423 -3.3258 -0.2918 36 1 3.0763 -3.2916 -1.8639 37 1 4.0104 -3.5174 -0.3656 38 1 1.9796 -2.2021 -3.0259 39 1 1.3187 -1.6479 -4.5859 40 1 3.0812 -3.2873 -5.0115 41 1 4.2170 -2.3767 -3.9869 42 1 2.9057 -1.3285 -6.5364 43 1 3.4835 -4.8671 -7.3779 44 1 4.4985 0.5603 -6.2377 45 1 5.0373 -0.1492 -4.6963 46 1 2.2200 0.8162 -5.3717 47 1 3.3605 1.5732 -4.2299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397311692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:41 Heat of formation + Delta-G solvation = -114.268329 kcal Electronic energy + Delta-G solvation = -25867.600950 eV Core-core repulsion = 22434.866986 eV Total energy + Delta-G solvation = -3432.733964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99538 -40.13194 -38.38208 -35.45435 -34.89414 -33.94858 -32.84919 -31.71736 -29.97608 -28.76657 -27.70127 -25.28106 -24.56851 -23.93426 -22.74516 -21.31973 -21.01060 -19.76586 -18.76574 -18.19549 -17.60660 -16.64730 -16.60165 -16.43938 -16.17519 -15.67006 -15.12059 -14.93190 -14.89075 -14.61033 -14.32167 -14.07685 -13.92654 -13.52787 -13.35354 -13.29784 -13.24033 -13.14033 -12.82096 -12.77814 -12.62499 -12.48766 -12.45091 -12.16240 -11.92787 -11.81657 -11.64353 -11.56516 -11.43686 -11.02475 -10.99218 -10.71747 -10.61501 -10.38545 -9.59410 -8.07547 -6.20363 1.41397 1.44235 1.48458 1.52496 1.99428 2.44507 2.74978 3.19388 3.41575 3.48919 3.55628 3.82933 3.97848 4.05628 4.16845 4.24122 4.33717 4.34057 4.37199 4.44471 4.47771 4.52901 4.56232 4.63379 4.70899 4.74684 4.83204 4.85333 4.95504 4.95993 5.00581 5.08330 5.16213 5.17039 5.20793 5.23432 5.25315 5.39886 5.44093 5.52049 5.65156 5.86566 5.98796 6.13869 6.39191 6.45016 6.88612 7.08158 7.47473 8.95869 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.004465 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.309925 B = 6270.093872 C = 6962.868141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 H 0.067 0.933 4 O -0.373 6.373 5 C 0.073 3.927 6 H 0.060 0.940 7 C -0.143 4.143 8 C -0.104 4.104 9 H 0.068 0.932 10 C -0.143 4.143 11 C -0.134 4.134 12 H 0.122 0.878 13 C 0.521 3.479 14 O -0.584 6.584 15 N -0.598 5.598 16 C 0.109 3.891 17 C -0.111 4.111 18 C 0.045 3.955 19 C -0.534 4.534 20 H 0.046 0.954 21 C 0.022 3.978 22 N -0.910 5.910 23 Si 0.945 3.055 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.113 4.113 28 C 0.116 3.884 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.003 0.997 43 H 0.262 0.738 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 1.786 14.102 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.085 0.915 4 O -0.293 6.293 5 C 0.016 3.984 6 H 0.078 0.922 7 C -0.199 4.199 8 C -0.123 4.123 9 H 0.086 0.914 10 C -0.200 4.200 11 C -0.155 4.155 12 H 0.139 0.861 13 C 0.310 3.690 14 O -0.465 6.465 15 N -0.329 5.329 16 C -0.012 4.012 17 C -0.149 4.149 18 C 0.027 3.973 19 C -0.572 4.572 20 H 0.064 0.936 21 C -0.177 4.177 22 N -0.550 5.550 23 Si 0.772 3.228 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.151 4.151 28 C -0.007 4.007 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.680 2.168 14.356 15.255 hybrid contribution 1.051 -0.273 -1.269 1.670 sum -3.629 1.895 13.088 13.713 Atomic orbital electron populations 1.21788 0.91218 1.03781 1.02994 1.22893 0.96560 0.95100 0.82846 0.91543 1.89117 1.27543 1.74709 1.37898 1.23072 0.84302 0.97962 0.93071 0.92189 1.21894 1.02084 0.96627 0.99336 1.22400 0.95969 0.97764 0.96171 0.91371 1.21966 1.03523 0.92137 1.02370 1.22864 1.00388 0.97762 0.94471 0.86059 1.20701 0.76371 0.88365 0.83576 1.90611 1.53295 1.19478 1.83119 1.48247 1.63811 1.13460 1.07419 1.21963 0.98273 0.80322 1.00688 1.21673 0.95397 1.01633 0.96225 1.18608 0.94936 0.90808 0.92966 1.21512 0.99404 1.01464 1.34852 0.93609 1.25571 0.97645 0.97764 0.96766 1.69929 1.24847 1.13978 1.46199 0.85755 0.80053 0.78395 0.78620 1.20239 1.20902 1.19930 1.21852 0.96494 0.98041 0.98712 1.21613 0.96931 0.93152 0.88957 0.90529 0.90922 0.91034 0.89869 0.90570 0.91541 0.90772 0.92580 0.90308 0.88321 0.91572 0.90038 0.95063 0.97895 0.92894 0.91859 0.93959 0.91148 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.53 71.98 0.69 -2.21 16 2 C 0.08 2.18 3.39 31.10 0.11 2.28 16 3 H 0.07 2.02 6.81 -2.39 -0.02 2.01 16 4 O -0.37 -9.61 11.05 -148.98 -1.65 -11.25 16 5 C 0.07 1.71 3.83 31.09 0.12 1.83 16 6 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 7 C -0.14 -2.49 8.39 71.98 0.60 -1.89 16 8 C -0.10 -2.57 3.23 -9.78 -0.03 -2.61 16 9 H 0.07 1.95 7.73 -2.38 -0.02 1.93 16 10 C -0.14 -3.02 7.50 71.98 0.54 -2.48 16 11 C -0.13 -3.54 1.82 -10.52 -0.02 -3.55 16 12 H 0.12 2.84 5.80 -2.39 -0.01 2.82 16 13 C 0.52 17.30 6.71 87.66 0.59 17.89 16 14 O -0.58 -22.67 14.98 -3.02 -0.05 -22.72 16 15 N -0.60 -20.39 2.98 -819.71 -2.44 -22.83 16 16 C 0.11 3.64 6.25 86.22 0.54 4.18 16 17 C -0.11 -4.66 5.14 30.53 0.16 -4.50 16 18 C 0.05 2.12 2.07 -11.51 -0.02 2.09 16 19 C -0.53 -28.12 8.56 25.60 0.22 -27.90 16 20 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 21 C 0.02 1.14 5.30 84.65 0.45 1.59 16 22 N -0.91 -48.86 11.30 21.45 0.24 -48.62 16 23 Si 0.95 41.89 29.54 68.60 2.03 43.91 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.11 -4.54 5.30 30.67 0.16 -4.37 16 28 C 0.12 4.11 6.42 86.36 0.55 4.67 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.26 7.82 -2.39 -0.02 1.24 16 33 H 0.08 1.25 6.56 -2.38 -0.02 1.24 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 36 H 0.06 1.33 6.63 -2.39 -0.02 1.31 16 37 H 0.08 1.45 6.82 -2.39 -0.02 1.43 16 38 H 0.10 2.74 3.65 -2.38 -0.01 2.73 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.08 3.86 6.03 -2.39 -0.01 3.84 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 47 H 0.08 2.82 7.04 -2.39 -0.02 2.80 16 Total: -1.00 -59.89 352.77 3.72 -56.16 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.94 Total: 20.33 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.65 Total: -14.99 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -2.20 Total: -71.45 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.69 Total: -33.97 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -59.89 3.72 -56.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397311692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.105 kcal (2) G-P(sol) polarization free energy of solvation -59.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds