Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.33153 * 2 1 4 4 O 1.44423 * 110.46623 * 122.31271 * 2 1 3 5 5 C 1.44427 * 105.27778 * 159.38786 * 4 2 1 6 6 H 1.08999 * 110.36836 * 78.32128 * 5 4 2 7 7 C 1.52995 * 110.47015 * 200.60820 * 5 4 2 8 8 C 1.54480 * 104.80476 * 319.49637 * 5 4 2 9 9 H 1.08997 * 110.50528 * 265.32816 * 8 5 4 10 10 C 1.52998 * 110.51512 * 142.75534 * 8 5 4 11 11 C 1.54478 * 110.37703 * 237.75187 * 2 1 3 12 12 H 1.09006 * 110.50728 * 335.72481 * 11 2 1 13 13 C 1.50695 * 110.62919 * 98.37471 * 11 2 1 14 14 O 1.21285 * 120.00185 * 29.01728 * 13 11 2 15 15 N 1.34784 * 120.00186 * 209.01310 * 13 11 2 16 16 C 1.46929 * 120.62894 * 354.13746 * 15 13 11 17 17 C 1.53619 * 108.54179 * 126.36514 * 16 15 13 18 18 C 1.53045 * 109.24135 * 54.86159 * 17 16 15 19 19 C 1.50706 * 109.45947 * 178.49120 * 18 17 16 20 20 H 1.07997 * 119.99972 * 120.06527 * 19 18 17 21 21 C 1.37880 * 119.99461 * 300.05953 * 19 18 17 22 22 N 1.31511 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99593 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47195 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47058 * 119.99943 * 23 21 19 26 26 H 1.48496 * 109.47618 * 240.00372 * 23 21 19 27 27 C 1.53044 * 109.53321 * 298.50690 * 18 17 16 28 28 C 1.46921 * 120.63094 * 174.41517 * 15 13 11 29 29 H 1.08993 * 109.47013 * 187.23680 * 1 2 3 30 30 H 1.08990 * 109.47067 * 307.24219 * 1 2 3 31 31 H 1.09007 * 109.46620 * 67.23934 * 1 2 3 32 32 H 1.09001 * 109.47205 * 176.98819 * 7 5 4 33 33 H 1.08995 * 109.47657 * 296.99127 * 7 5 4 34 34 H 1.09007 * 109.46988 * 56.99047 * 7 5 4 35 35 H 1.09004 * 109.46497 * 56.70906 * 10 8 5 36 36 H 1.08994 * 109.46988 * 176.70944 * 10 8 5 37 37 H 1.08997 * 109.47205 * 296.71721 * 10 8 5 38 38 H 1.08992 * 109.58811 * 246.20306 * 16 15 13 39 39 H 1.09008 * 109.58335 * 6.62725 * 16 15 13 40 40 H 1.08996 * 109.63724 * 294.86622 * 17 16 15 41 41 H 1.09000 * 109.45580 * 174.73892 * 17 16 15 42 42 H 1.08996 * 109.44909 * 58.52095 * 18 17 16 43 43 H 0.96999 * 119.99882 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.49759 * 301.41448 * 27 18 17 45 45 H 1.09000 * 109.52265 * 181.33661 * 27 18 17 46 46 H 1.08994 * 109.58908 * 353.37787 * 28 15 13 47 47 H 1.09002 * 109.58242 * 113.80396 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7233 1.1435 5 6 3.3898 -1.0846 0.7973 6 1 4.0537 -0.2289 0.9196 7 6 3.8678 -2.2556 1.6582 8 6 3.3195 -1.5026 -0.6882 9 1 3.1988 -2.5824 -0.7757 10 6 4.5732 -1.0424 -1.4346 11 6 2.0679 -0.7727 -1.2247 12 1 1.3284 -1.4916 -1.5776 13 6 2.4453 0.1800 -2.3297 14 8 2.8146 1.3037 -2.0618 15 7 2.3726 -0.2168 -3.6157 16 6 2.0514 -1.6105 -3.9521 17 6 0.8605 -1.6169 -4.9225 18 6 1.1906 -0.7389 -6.1318 19 6 0.0400 -0.7713 -7.1046 20 1 -0.4711 0.1432 -7.3670 21 6 -0.3599 -1.9684 -7.6597 22 7 0.2624 -3.0819 -7.3399 23 14 -1.7864 -2.0086 -8.8650 24 1 -2.3124 -0.6329 -9.0555 25 1 -1.3180 -2.5439 -10.1686 26 1 -2.8625 -2.8807 -8.3296 27 6 1.4271 0.7007 -5.6696 28 6 2.6189 0.7347 -4.7078 29 1 -0.3633 -1.0194 0.1294 30 1 -0.3633 0.6219 0.8180 31 1 -0.3633 0.3976 -0.9477 32 1 4.8705 -2.5493 1.3476 33 1 3.8857 -1.9533 2.7053 34 1 3.1877 -3.0986 1.5350 35 1 5.4577 -1.4499 -0.9448 36 1 4.5330 -1.3960 -2.4648 37 1 4.6222 0.0464 -1.4257 38 1 2.9139 -2.0804 -4.4247 39 1 1.7881 -2.1541 -3.0447 40 1 -0.0239 -1.2259 -4.4195 41 1 0.6687 -2.6370 -5.2551 42 1 2.0893 -1.1161 -6.6196 43 1 -0.0192 -3.9241 -7.7302 44 1 0.5373 1.0700 -5.1596 45 1 1.6388 1.3306 -6.5337 46 1 2.7302 1.7390 -4.2992 47 1 3.5268 0.4521 -5.2408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397311693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = -99.847163 kcal Electronic energy + Delta-G solvation = -25767.189885 eV Core-core repulsion = 22335.081270 eV Total energy + Delta-G solvation = -3432.108616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.86258 -38.78357 -36.76717 -33.96323 -33.46548 -32.81127 -31.15680 -30.10107 -29.42783 -27.40763 -26.13877 -23.79011 -22.90000 -22.46871 -21.52303 -20.98958 -19.46355 -18.13324 -17.09089 -16.26893 -16.14754 -15.92035 -15.68924 -14.90761 -14.59146 -14.41877 -13.79524 -13.44072 -13.29680 -13.18894 -13.08114 -12.75176 -12.54143 -12.45484 -12.37303 -12.14011 -11.98392 -11.83794 -11.63787 -11.46000 -11.34233 -11.08482 -10.99759 -10.66620 -10.65655 -10.48135 -10.41194 -10.15236 -9.80546 -9.65406 -9.36554 -9.22333 -8.94914 -8.42928 -8.04716 -6.07696 -4.13799 2.86254 3.24218 3.33073 3.36178 3.37376 3.75861 4.37324 4.42573 4.51541 4.71182 4.80697 5.08126 5.12010 5.20849 5.22394 5.31256 5.37791 5.40105 5.48379 5.52475 5.63400 5.73430 5.77272 5.80512 5.87252 5.91279 5.91941 6.03577 6.06208 6.07811 6.10156 6.18348 6.21249 6.25331 6.40279 6.60669 6.82516 6.85528 6.98449 7.08885 7.22428 7.61840 7.86320 7.87191 7.99034 8.35398 8.49332 8.89913 9.51755 10.97810 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.003974 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.159192 B = 7043.986894 C = 7161.243340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.087 0.913 4 O -0.368 6.368 5 C 0.076 3.924 6 H 0.071 0.929 7 C -0.145 4.145 8 C -0.103 4.103 9 H 0.090 0.910 10 C -0.157 4.157 11 C -0.144 4.144 12 H 0.107 0.893 13 C 0.529 3.471 14 O -0.559 6.559 15 N -0.596 5.596 16 C 0.100 3.900 17 C -0.124 4.124 18 C 0.049 3.951 19 C -0.512 4.512 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.123 4.123 28 C 0.112 3.888 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 0.790 13.802 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.029 3.971 3 H 0.105 0.895 4 O -0.288 6.288 5 C 0.018 3.982 6 H 0.089 0.911 7 C -0.202 4.202 8 C -0.123 4.123 9 H 0.109 0.891 10 C -0.215 4.215 11 C -0.165 4.165 12 H 0.125 0.875 13 C 0.317 3.683 14 O -0.439 6.439 15 N -0.328 5.328 16 C -0.022 4.022 17 C -0.162 4.162 18 C 0.030 3.970 19 C -0.550 4.550 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.161 4.161 28 C -0.010 4.010 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.122 0.878 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.215 1.133 14.068 15.422 hybrid contribution -0.759 -0.253 -1.047 1.318 sum 5.456 0.880 13.021 14.146 Atomic orbital electron populations 1.21819 0.92883 1.02959 1.02709 1.22896 0.95214 0.96121 0.82872 0.89527 1.89105 1.26851 1.74753 1.38091 1.23026 0.84958 0.97325 0.92857 0.91148 1.21800 1.01209 0.97319 0.99875 1.22465 0.94137 1.00627 0.95033 0.89146 1.22009 0.96232 1.02764 1.00450 1.22882 0.99543 0.98452 0.95629 0.87523 1.20006 0.77221 0.87618 0.83436 1.90623 1.48686 1.21459 1.83112 1.48232 1.67793 1.11714 1.05035 1.22193 1.00144 0.80281 0.99537 1.22103 0.93616 1.05361 0.95148 1.18636 0.97086 0.88692 0.92571 1.21243 1.15777 0.93438 1.24517 0.92650 1.24954 0.96682 0.95732 0.96561 1.69839 1.41053 0.98311 1.43881 0.86567 0.82471 0.78084 0.81074 1.19828 1.21040 1.21038 1.22011 0.95917 1.01127 0.97071 1.21700 0.98779 0.92840 0.87685 0.91622 0.91762 0.90934 0.91168 0.91907 0.91711 0.92153 0.91806 0.91128 0.91834 0.91355 0.94206 0.87774 0.95474 0.93017 0.92983 0.92125 0.90406 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.52 37.16 0.35 -1.46 16 2 C 0.09 1.21 3.42 -25.96 -0.09 1.12 16 3 H 0.09 1.34 6.91 -51.93 -0.36 0.98 16 4 O -0.37 -5.08 11.04 -35.23 -0.39 -5.47 16 5 C 0.08 0.89 3.47 -25.96 -0.09 0.80 16 6 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 7 C -0.14 -1.33 9.52 37.15 0.35 -0.97 16 8 C -0.10 -1.24 3.25 -89.05 -0.29 -1.53 16 9 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 10 C -0.16 -1.91 8.01 37.16 0.30 -1.62 16 11 C -0.14 -2.01 2.21 -90.21 -0.20 -2.21 16 12 H 0.11 1.46 5.93 -51.93 -0.31 1.15 16 13 C 0.53 8.80 4.75 -10.98 -0.05 8.75 16 14 O -0.56 -10.63 14.19 5.55 0.08 -10.55 16 15 N -0.60 -10.23 2.90 -172.51 -0.50 -10.73 16 16 C 0.10 1.72 6.34 -3.49 -0.02 1.70 16 17 C -0.12 -2.63 5.17 -26.39 -0.14 -2.76 16 18 C 0.05 1.12 2.06 -91.72 -0.19 0.93 16 19 C -0.51 -13.36 8.56 -34.44 -0.29 -13.65 16 20 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 22 N -0.89 -23.97 11.30 55.43 0.63 -23.34 16 23 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 28 C 0.11 1.99 6.41 -3.71 -0.02 1.96 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 37 H 0.07 1.01 6.43 -51.93 -0.33 0.67 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.02 5.42 -51.92 -0.28 0.74 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.38 7.04 -51.93 -0.37 1.01 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -28.10 356.89 -8.67 -36.77 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.23 Total: 2.42 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.62 Total: -10.01 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.13 Total: -34.07 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.31 Total: -16.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.10 -8.67 -36.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397311693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.076 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds