Wall clock time and date at job start Tue Mar 31 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.33153 * 2 1 4 4 O 1.44423 * 110.46623 * 122.31271 * 2 1 3 5 5 C 1.44427 * 105.27778 * 159.38786 * 4 2 1 6 6 H 1.08999 * 110.36836 * 78.32128 * 5 4 2 7 7 C 1.52995 * 110.47015 * 200.60820 * 5 4 2 8 8 C 1.54480 * 104.80476 * 319.49637 * 5 4 2 9 9 H 1.08997 * 110.50528 * 265.32816 * 8 5 4 10 10 C 1.52998 * 110.51512 * 142.75534 * 8 5 4 11 11 C 1.54478 * 110.37703 * 237.75187 * 2 1 3 12 12 H 1.09006 * 110.50728 * 335.72481 * 11 2 1 13 13 C 1.50695 * 110.62919 * 98.37471 * 11 2 1 14 14 O 1.21285 * 120.00185 * 29.01728 * 13 11 2 15 15 N 1.34784 * 120.00186 * 209.01310 * 13 11 2 16 16 C 1.46929 * 120.62894 * 354.13746 * 15 13 11 17 17 C 1.53619 * 108.54179 * 126.36514 * 16 15 13 18 18 C 1.53045 * 109.24135 * 54.86159 * 17 16 15 19 19 C 1.50706 * 109.45947 * 178.49120 * 18 17 16 20 20 H 1.07997 * 119.99972 * 120.06527 * 19 18 17 21 21 C 1.37880 * 119.99461 * 300.05953 * 19 18 17 22 22 N 1.31511 * 120.00261 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99593 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47195 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47058 * 119.99943 * 23 21 19 26 26 H 1.48496 * 109.47618 * 240.00372 * 23 21 19 27 27 C 1.53044 * 109.53321 * 298.50690 * 18 17 16 28 28 C 1.46921 * 120.63094 * 174.41517 * 15 13 11 29 29 H 1.08993 * 109.47013 * 187.23680 * 1 2 3 30 30 H 1.08990 * 109.47067 * 307.24219 * 1 2 3 31 31 H 1.09007 * 109.46620 * 67.23934 * 1 2 3 32 32 H 1.09001 * 109.47205 * 176.98819 * 7 5 4 33 33 H 1.08995 * 109.47657 * 296.99127 * 7 5 4 34 34 H 1.09007 * 109.46988 * 56.99047 * 7 5 4 35 35 H 1.09004 * 109.46497 * 56.70906 * 10 8 5 36 36 H 1.08994 * 109.46988 * 176.70944 * 10 8 5 37 37 H 1.08997 * 109.47205 * 296.71721 * 10 8 5 38 38 H 1.08992 * 109.58811 * 246.20306 * 16 15 13 39 39 H 1.09008 * 109.58335 * 6.62725 * 16 15 13 40 40 H 1.08996 * 109.63724 * 294.86622 * 17 16 15 41 41 H 1.09000 * 109.45580 * 174.73892 * 17 16 15 42 42 H 1.08996 * 109.44909 * 58.52095 * 18 17 16 43 43 H 0.96999 * 119.99882 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.49759 * 301.41448 * 27 18 17 45 45 H 1.09000 * 109.52265 * 181.33661 * 27 18 17 46 46 H 1.08994 * 109.58908 * 353.37787 * 28 15 13 47 47 H 1.09002 * 109.58242 * 113.80396 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7233 1.1435 5 6 3.3898 -1.0846 0.7973 6 1 4.0537 -0.2289 0.9196 7 6 3.8678 -2.2556 1.6582 8 6 3.3195 -1.5026 -0.6882 9 1 3.1988 -2.5824 -0.7757 10 6 4.5732 -1.0424 -1.4346 11 6 2.0679 -0.7727 -1.2247 12 1 1.3284 -1.4916 -1.5776 13 6 2.4453 0.1800 -2.3297 14 8 2.8146 1.3037 -2.0618 15 7 2.3726 -0.2168 -3.6157 16 6 2.0514 -1.6105 -3.9521 17 6 0.8605 -1.6169 -4.9225 18 6 1.1906 -0.7389 -6.1318 19 6 0.0400 -0.7713 -7.1046 20 1 -0.4711 0.1432 -7.3670 21 6 -0.3599 -1.9684 -7.6597 22 7 0.2624 -3.0819 -7.3399 23 14 -1.7864 -2.0086 -8.8650 24 1 -2.3124 -0.6329 -9.0555 25 1 -1.3180 -2.5439 -10.1686 26 1 -2.8625 -2.8807 -8.3296 27 6 1.4271 0.7007 -5.6696 28 6 2.6189 0.7347 -4.7078 29 1 -0.3633 -1.0194 0.1294 30 1 -0.3633 0.6219 0.8180 31 1 -0.3633 0.3976 -0.9477 32 1 4.8705 -2.5493 1.3476 33 1 3.8857 -1.9533 2.7053 34 1 3.1877 -3.0986 1.5350 35 1 5.4577 -1.4499 -0.9448 36 1 4.5330 -1.3960 -2.4648 37 1 4.6222 0.0464 -1.4257 38 1 2.9139 -2.0804 -4.4247 39 1 1.7881 -2.1541 -3.0447 40 1 -0.0239 -1.2259 -4.4195 41 1 0.6687 -2.6370 -5.2551 42 1 2.0893 -1.1161 -6.6196 43 1 -0.0192 -3.9241 -7.7302 44 1 0.5373 1.0700 -5.1596 45 1 1.6388 1.3306 -6.5337 46 1 2.7302 1.7390 -4.2992 47 1 3.5268 0.4521 -5.2408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397311693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:43 Heat of formation + Delta-G solvation = -114.608971 kcal Electronic energy + Delta-G solvation = -25767.830005 eV Core-core repulsion = 22335.081270 eV Total energy + Delta-G solvation = -3432.748736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06065 -40.04675 -38.29972 -35.40341 -34.81647 -33.91590 -32.83363 -31.67417 -30.29406 -28.61661 -27.77973 -25.15976 -24.24779 -23.86112 -22.77173 -22.07622 -20.97187 -19.52072 -18.62565 -17.99624 -17.35246 -17.03366 -16.80262 -16.50163 -16.11097 -15.61582 -15.04179 -14.90896 -14.66458 -14.53396 -14.33507 -14.22305 -13.89189 -13.58200 -13.41614 -13.29282 -13.11721 -13.08703 -12.85653 -12.83106 -12.67458 -12.56251 -12.42899 -12.16553 -12.03935 -11.92489 -11.64322 -11.49568 -11.45282 -11.01923 -10.98813 -10.71639 -10.60823 -10.38787 -9.55217 -8.08004 -6.20773 1.40062 1.43999 1.53276 1.54622 2.02281 2.44229 2.75439 3.18854 3.42659 3.48739 3.56014 3.77086 3.95194 4.16318 4.20231 4.25541 4.31267 4.34581 4.37358 4.42383 4.47651 4.50703 4.56103 4.58708 4.65565 4.72523 4.83622 4.85966 4.94522 4.98236 5.00434 5.03146 5.09929 5.17171 5.18837 5.24588 5.26770 5.32369 5.43517 5.54311 5.65517 5.85572 5.99025 6.13859 6.39477 6.48562 6.88729 7.13707 7.47133 8.95474 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.003974 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.159192 B = 7043.986894 C = 7161.243340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.067 0.933 4 O -0.377 6.377 5 C 0.071 3.929 6 H 0.065 0.935 7 C -0.140 4.140 8 C -0.100 4.100 9 H 0.111 0.889 10 C -0.152 4.152 11 C -0.143 4.143 12 H 0.114 0.886 13 C 0.532 3.468 14 O -0.583 6.583 15 N -0.599 5.599 16 C 0.114 3.886 17 C -0.115 4.115 18 C 0.046 3.954 19 C -0.534 4.534 20 H 0.046 0.954 21 C 0.020 3.980 22 N -0.911 5.911 23 Si 0.946 3.054 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.280 1.280 27 C -0.113 4.113 28 C 0.118 3.882 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.080 0.920 42 H 0.004 0.996 43 H 0.261 0.739 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -0.148 14.893 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.084 0.916 4 O -0.297 6.297 5 C 0.014 3.986 6 H 0.083 0.917 7 C -0.197 4.197 8 C -0.119 4.119 9 H 0.129 0.871 10 C -0.209 4.209 11 C -0.164 4.164 12 H 0.131 0.869 13 C 0.322 3.678 14 O -0.464 6.464 15 N -0.330 5.330 16 C -0.008 4.008 17 C -0.153 4.153 18 C 0.027 3.973 19 C -0.572 4.572 20 H 0.064 0.936 21 C -0.179 4.179 22 N -0.550 5.550 23 Si 0.773 3.227 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.151 4.151 28 C -0.004 4.004 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.022 0.978 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.545 0.196 15.168 16.521 hybrid contribution -0.840 0.083 -1.391 1.627 sum 5.705 0.279 13.777 14.914 Atomic orbital electron populations 1.21805 0.91888 1.03700 1.02743 1.22815 0.96028 0.95145 0.83052 0.91556 1.89102 1.27945 1.74607 1.38039 1.23196 0.84008 0.98215 0.93184 0.91739 1.21809 1.02211 0.96115 0.99578 1.22541 0.92924 1.01427 0.94986 0.87133 1.21947 0.97460 1.01163 1.00366 1.22929 1.00816 0.98050 0.94633 0.86851 1.20413 0.76241 0.87614 0.83535 1.90615 1.49685 1.22747 1.83396 1.48236 1.67984 1.11554 1.05233 1.22038 0.98466 0.80593 0.99742 1.21866 0.95044 1.03178 0.95247 1.18604 0.95031 0.90811 0.92808 1.21566 1.16788 0.93238 1.25605 0.93591 1.25590 0.98775 0.95534 0.98011 1.69940 1.41985 0.98581 1.44504 0.85688 0.79907 0.77934 0.79191 1.19787 1.20739 1.20592 1.21854 0.96550 0.99108 0.97617 1.21576 0.98002 0.93316 0.87544 0.90720 0.90831 0.91618 0.89221 0.91549 0.91410 0.89678 0.92532 0.93562 0.91339 0.88552 0.95192 0.90211 0.97823 0.92922 0.93943 0.91893 0.90229 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.52 71.98 0.69 -2.71 16 2 C 0.09 2.35 3.42 31.10 0.11 2.45 16 3 H 0.07 2.05 6.91 -2.39 -0.02 2.03 16 4 O -0.38 -9.75 11.04 -148.98 -1.65 -11.39 16 5 C 0.07 1.52 3.47 31.10 0.11 1.62 16 6 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 7 C -0.14 -2.14 9.52 71.98 0.69 -1.45 16 8 C -0.10 -2.15 3.25 -9.78 -0.03 -2.18 16 9 H 0.11 1.99 7.87 -2.39 -0.02 1.97 16 10 C -0.15 -3.38 8.01 71.98 0.58 -2.81 16 11 C -0.14 -3.77 2.21 -10.53 -0.02 -3.79 16 12 H 0.11 2.84 5.93 -2.38 -0.01 2.82 16 13 C 0.53 17.21 4.75 87.65 0.42 17.63 16 14 O -0.58 -22.00 14.19 -3.04 -0.04 -22.05 16 15 N -0.60 -19.98 2.90 -818.08 -2.37 -22.35 16 16 C 0.11 3.74 6.34 86.51 0.55 4.29 16 17 C -0.11 -4.87 5.17 30.82 0.16 -4.71 16 18 C 0.05 2.15 2.06 -11.51 -0.02 2.13 16 19 C -0.53 -28.26 8.56 25.60 0.22 -28.04 16 20 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 21 C 0.02 1.05 5.30 84.66 0.45 1.50 16 22 N -0.91 -49.20 11.30 21.45 0.24 -48.96 16 23 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C -0.11 -4.53 5.30 30.67 0.16 -4.37 16 28 C 0.12 4.13 6.41 86.36 0.55 4.68 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.34 7.89 -2.39 -0.02 1.32 16 37 H 0.05 1.26 6.43 -2.39 -0.02 1.25 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 2.65 5.42 -2.38 -0.01 2.63 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 3.82 6.03 -2.39 -0.01 3.81 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 44 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.08 2.78 7.04 -2.39 -0.02 2.77 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -60.19 356.89 3.73 -56.46 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.93 Total: 19.83 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.59 Total: -15.76 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -2.13 Total: -71.31 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.69 Total: -33.44 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -60.19 3.73 -56.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397311693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.149 kcal (2) G-P(sol) polarization free energy of solvation -60.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds