Wall clock time and date at job start Tue Mar 31 2020 07:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46768 * 2 1 4 4 C 1.42900 * 113.99879 * 180.02562 * 3 2 1 5 5 C 1.53782 * 113.61412 * 209.99884 * 4 3 2 6 6 C 1.53779 * 87.08113 * 220.01727 * 5 4 3 7 7 C 1.52992 * 113.61479 * 139.97995 * 6 5 4 8 8 C 1.50700 * 109.47590 * 175.00033 * 7 6 5 9 9 O 1.21290 * 119.99713 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46923 * 120.63176 * 0.02562 * 10 8 7 12 12 C 1.53190 * 108.89447 * 126.46480 * 11 10 8 13 13 C 1.53032 * 109.31397 * 54.56347 * 12 11 10 14 14 C 1.53044 * 109.53784 * 298.63312 * 13 12 11 15 15 H 1.09001 * 109.49644 * 301.41408 * 14 13 12 16 16 C 1.50699 * 109.49612 * 181.31947 * 14 13 12 17 17 H 1.08008 * 119.99583 * 275.05497 * 16 14 13 18 18 C 1.37880 * 120.00273 * 95.05651 * 16 14 13 19 19 N 1.31512 * 120.00161 * 186.19699 * 18 16 14 20 20 Si 1.86797 * 119.99890 * 6.19833 * 18 16 14 21 21 H 1.48504 * 109.46920 * 84.76650 * 20 18 16 22 22 H 1.48499 * 109.47012 * 204.76979 * 20 18 16 23 23 H 1.48500 * 109.46924 * 324.77376 * 20 18 16 24 24 C 1.46962 * 120.65096 * 179.81825 * 10 8 7 25 25 C 1.53778 * 113.61536 * 112.49844 * 4 3 2 26 26 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47152 * 299.99761 * 1 2 3 28 28 H 1.09000 * 109.47060 * 60.00439 * 1 2 3 29 29 H 1.08997 * 109.47496 * 239.99819 * 2 1 3 30 30 H 1.08996 * 109.47504 * 119.99746 * 2 1 3 31 31 H 1.09007 * 112.91029 * 341.24954 * 4 3 2 32 32 H 1.08998 * 113.61023 * 105.47205 * 5 4 3 33 33 H 1.08995 * 113.61442 * 334.56628 * 5 4 3 34 34 H 1.09007 * 113.61501 * 270.79984 * 6 5 4 35 35 H 1.09004 * 109.47182 * 54.99941 * 7 6 5 36 36 H 1.08998 * 109.47279 * 295.00217 * 7 6 5 37 37 H 1.08995 * 109.58568 * 6.59938 * 11 10 8 38 38 H 1.09002 * 109.58433 * 246.32313 * 11 10 8 39 39 H 1.09007 * 109.49483 * 174.51648 * 12 11 10 40 40 H 1.08997 * 109.49679 * 294.60956 * 12 11 10 41 41 H 1.08995 * 109.46358 * 58.65815 * 13 12 11 42 42 H 1.09003 * 109.45934 * 178.63117 * 13 12 11 43 43 H 0.97000 * 120.00291 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46332 * 113.75428 * 24 10 8 45 45 H 1.08994 * 109.71661 * 353.46903 * 24 10 8 46 46 H 1.08997 * 113.61611 * 25.43623 * 25 4 3 47 47 H 1.08992 * 113.61961 * 254.52819 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.9488 2.7253 0.7039 6 6 4.9895 2.8316 -0.4232 7 6 5.2306 4.2647 -0.9016 8 6 6.3475 4.2755 -1.9132 9 8 6.8964 3.2389 -2.2216 10 7 6.7358 5.4369 -2.4760 11 6 6.0802 6.7007 -2.1131 12 6 7.1498 7.7074 -1.6780 13 6 8.2002 7.8391 -2.7830 14 6 8.8758 6.4850 -3.0112 15 1 9.3367 6.1473 -2.0829 16 6 9.9323 6.6232 -4.0769 17 1 9.6608 6.5475 -5.1195 18 6 11.2456 6.8462 -3.7209 19 7 12.1463 7.0880 -4.6482 20 14 11.7455 6.8047 -1.9215 21 1 12.0172 5.4024 -1.5155 22 1 12.9703 7.6221 -1.7291 23 1 10.6461 7.3567 -1.0896 24 6 7.8261 5.4645 -3.4611 25 6 4.0017 2.0466 -1.3025 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9291 0.5459 0.3218 32 1 4.3848 2.5317 1.6839 33 1 3.2303 3.5449 0.7135 34 1 5.9144 2.2934 -0.2157 35 1 5.5039 4.8903 -0.0518 36 1 4.3211 4.6525 -1.3604 37 1 5.3845 6.5287 -1.2918 38 1 5.5389 7.0921 -2.9745 39 1 6.6855 8.6774 -1.4998 40 1 7.6269 7.3582 -0.7623 41 1 7.7185 8.1646 -3.7050 42 1 8.9495 8.5730 -2.4862 43 1 13.0701 7.2452 -4.3977 44 1 7.4291 5.7538 -4.4342 45 1 8.2829 4.4774 -3.5317 46 1 3.2978 2.6807 -1.8414 47 1 4.4806 1.3053 -1.9422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397565520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:17 Heat of formation + Delta-G solvation = -80.826180 kcal Electronic energy + Delta-G solvation = -24198.339650 eV Core-core repulsion = 20767.055846 eV Total energy + Delta-G solvation = -3431.283804 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19137 -39.17507 -37.13347 -36.37234 -33.43934 -31.84119 -31.50270 -30.73489 -29.51808 -25.82935 -25.24716 -24.89908 -23.24801 -22.64330 -21.71430 -19.90633 -19.48943 -18.48116 -17.07470 -17.00612 -16.58975 -15.88636 -15.63488 -15.37967 -15.11521 -14.37147 -14.17566 -13.82870 -13.51903 -13.45149 -12.99910 -12.83178 -12.69694 -12.57055 -12.54574 -12.47284 -12.30770 -11.99733 -11.54241 -11.46223 -11.25589 -11.11853 -10.93926 -10.85316 -10.67620 -10.41474 -10.37888 -10.02171 -9.84417 -9.61518 -9.58866 -9.33037 -9.01269 -8.54901 -8.04164 -6.11098 -4.10670 3.01504 3.28421 3.36370 3.38110 3.38704 3.54261 4.37101 4.40187 4.45463 4.64103 4.66164 4.79435 4.90449 4.93279 5.04032 5.07492 5.14059 5.22473 5.35378 5.37925 5.45109 5.55801 5.58927 5.59249 5.60662 5.64460 5.68205 5.80061 5.90665 5.95519 6.01398 6.08314 6.17528 6.26650 6.31912 6.39941 6.60270 6.71775 6.84536 6.92651 7.07454 7.26724 7.40377 7.73339 7.91026 8.46638 8.60619 8.93679 9.52071 11.01879 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.002884 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.575522 B = 9705.198801 C = 9894.969639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.061 3.939 5 C -0.132 4.132 6 C -0.092 4.092 7 C -0.128 4.128 8 C 0.508 3.492 9 O -0.547 6.547 10 N -0.610 5.610 11 C 0.110 3.890 12 C -0.140 4.140 13 C -0.112 4.112 14 C 0.005 3.995 15 H 0.034 0.966 16 C -0.512 4.512 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.265 1.265 24 C 0.122 3.878 25 C -0.145 4.145 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.264 0.736 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 -7.735 11.681 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.170 4.170 6 C -0.111 4.111 7 C -0.168 4.168 8 C 0.296 3.704 9 O -0.425 6.425 10 N -0.343 5.343 11 C -0.013 4.013 12 C -0.178 4.178 13 C -0.150 4.150 14 C -0.014 4.014 15 H 0.052 0.948 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.129 4.129 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.190 1.190 24 C 0.001 3.999 25 C -0.183 4.183 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.622 -8.086 11.460 24.939 hybrid contribution 0.628 -0.034 0.880 1.082 sum -19.993 -8.121 12.340 24.859 Atomic orbital electron populations 1.21748 0.93934 1.02131 1.03072 1.22491 0.95482 0.84242 0.99956 1.87943 1.20956 1.26048 1.94654 1.23696 0.80654 0.97910 0.97413 1.23314 0.97781 0.97854 0.98020 1.22078 0.97847 0.95060 0.96098 1.21651 0.98227 0.98195 0.98691 1.20569 0.84291 0.83443 0.82103 1.90663 1.56892 1.31794 1.63189 1.48430 1.36479 1.06353 1.43053 1.21681 0.95021 0.84681 0.99928 1.22032 0.97615 0.97855 1.00285 1.21831 0.96399 1.00536 0.96213 1.19461 0.93696 0.90807 0.97469 0.94812 1.20867 0.90884 1.49640 0.93663 0.90739 1.25040 0.96541 0.94162 0.97133 1.69904 1.02657 1.47878 1.33036 0.86854 0.77888 0.78520 0.86226 1.20155 1.21626 1.19027 1.21944 0.86323 1.02092 0.89495 1.23518 0.97773 1.00172 0.96836 0.91258 0.91947 0.91846 0.93399 0.93547 0.89646 0.90989 0.89100 0.87938 0.88959 0.89072 0.90757 0.91657 0.91858 0.92346 0.92641 0.92610 0.92587 0.92385 0.89676 0.89479 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.45 6.50 37.16 0.24 0.69 16 3 O -0.38 -4.02 10.35 -35.23 -0.36 -4.39 16 4 C 0.06 0.61 4.31 -25.92 -0.11 0.50 16 5 C -0.13 -1.24 7.47 -25.92 -0.19 -1.44 16 6 C -0.09 -1.05 3.15 -89.81 -0.28 -1.34 16 7 C -0.13 -1.51 3.88 -27.89 -0.11 -1.62 16 8 C 0.51 8.58 7.70 -10.99 -0.08 8.49 16 9 O -0.55 -11.27 15.18 5.55 0.08 -11.19 16 10 N -0.61 -10.55 2.98 -172.76 -0.51 -11.07 16 11 C 0.11 1.50 6.34 -3.71 -0.02 1.48 16 12 C -0.14 -2.13 6.08 -26.62 -0.16 -2.29 16 13 C -0.11 -2.20 5.15 -26.69 -0.14 -2.34 16 14 C 0.01 0.12 1.93 -91.67 -0.18 -0.05 16 15 H 0.03 0.82 5.25 -51.93 -0.27 0.55 16 16 C -0.51 -14.09 8.86 -34.44 -0.31 -14.39 16 17 H 0.07 2.21 8.06 -52.48 -0.42 1.79 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 20 Si 0.88 21.68 27.03 -169.99 -4.59 17.09 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.23 6.77 56.52 0.38 -5.85 16 24 C 0.12 2.56 5.69 -3.71 -0.02 2.54 16 25 C -0.15 -1.64 7.46 -25.92 -0.19 -1.84 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.76 7.87 -51.93 -0.41 0.36 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.40 16 34 H 0.10 1.33 7.68 -51.93 -0.40 0.94 16 35 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 36 H 0.09 0.92 7.64 -51.93 -0.40 0.53 16 37 H 0.07 0.78 5.93 -51.93 -0.31 0.47 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 45 H 0.08 1.96 7.02 -51.93 -0.36 1.60 16 46 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -32.05 368.04 -8.80 -40.84 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.45 Total: -0.17 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.27 Total: -10.24 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.26 Total: -37.49 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.28 Total: -15.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.05 -8.80 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.983 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds