Wall clock time and date at job start Tue Mar 31 2020 07:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46768 * 2 1 4 4 C 1.42900 * 113.99879 * 180.02562 * 3 2 1 5 5 C 1.53782 * 113.61412 * 209.99884 * 4 3 2 6 6 C 1.53779 * 87.08113 * 220.01727 * 5 4 3 7 7 C 1.52992 * 113.61479 * 139.97995 * 6 5 4 8 8 C 1.50700 * 109.47590 * 175.00033 * 7 6 5 9 9 O 1.21290 * 119.99713 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46923 * 120.63176 * 0.02562 * 10 8 7 12 12 C 1.53190 * 108.89447 * 126.46480 * 11 10 8 13 13 C 1.53032 * 109.31397 * 54.56347 * 12 11 10 14 14 C 1.53044 * 109.53784 * 298.63312 * 13 12 11 15 15 H 1.09001 * 109.49644 * 301.41408 * 14 13 12 16 16 C 1.50699 * 109.49612 * 181.31947 * 14 13 12 17 17 H 1.08008 * 119.99583 * 275.05497 * 16 14 13 18 18 C 1.37880 * 120.00273 * 95.05651 * 16 14 13 19 19 N 1.31512 * 120.00161 * 186.19699 * 18 16 14 20 20 Si 1.86797 * 119.99890 * 6.19833 * 18 16 14 21 21 H 1.48504 * 109.46920 * 84.76650 * 20 18 16 22 22 H 1.48499 * 109.47012 * 204.76979 * 20 18 16 23 23 H 1.48500 * 109.46924 * 324.77376 * 20 18 16 24 24 C 1.46962 * 120.65096 * 179.81825 * 10 8 7 25 25 C 1.53778 * 113.61536 * 112.49844 * 4 3 2 26 26 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47152 * 299.99761 * 1 2 3 28 28 H 1.09000 * 109.47060 * 60.00439 * 1 2 3 29 29 H 1.08997 * 109.47496 * 239.99819 * 2 1 3 30 30 H 1.08996 * 109.47504 * 119.99746 * 2 1 3 31 31 H 1.09007 * 112.91029 * 341.24954 * 4 3 2 32 32 H 1.08998 * 113.61023 * 105.47205 * 5 4 3 33 33 H 1.08995 * 113.61442 * 334.56628 * 5 4 3 34 34 H 1.09007 * 113.61501 * 270.79984 * 6 5 4 35 35 H 1.09004 * 109.47182 * 54.99941 * 7 6 5 36 36 H 1.08998 * 109.47279 * 295.00217 * 7 6 5 37 37 H 1.08995 * 109.58568 * 6.59938 * 11 10 8 38 38 H 1.09002 * 109.58433 * 246.32313 * 11 10 8 39 39 H 1.09007 * 109.49483 * 174.51648 * 12 11 10 40 40 H 1.08997 * 109.49679 * 294.60956 * 12 11 10 41 41 H 1.08995 * 109.46358 * 58.65815 * 13 12 11 42 42 H 1.09003 * 109.45934 * 178.63117 * 13 12 11 43 43 H 0.97000 * 120.00291 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46332 * 113.75428 * 24 10 8 45 45 H 1.08994 * 109.71661 * 353.46903 * 24 10 8 46 46 H 1.08997 * 113.61611 * 25.43623 * 25 4 3 47 47 H 1.08992 * 113.61961 * 254.52819 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.9488 2.7253 0.7039 6 6 4.9895 2.8316 -0.4232 7 6 5.2306 4.2647 -0.9016 8 6 6.3475 4.2755 -1.9132 9 8 6.8964 3.2389 -2.2216 10 7 6.7358 5.4369 -2.4760 11 6 6.0802 6.7007 -2.1131 12 6 7.1498 7.7074 -1.6780 13 6 8.2002 7.8391 -2.7830 14 6 8.8758 6.4850 -3.0112 15 1 9.3367 6.1473 -2.0829 16 6 9.9323 6.6232 -4.0769 17 1 9.6608 6.5475 -5.1195 18 6 11.2456 6.8462 -3.7209 19 7 12.1463 7.0880 -4.6482 20 14 11.7455 6.8047 -1.9215 21 1 12.0172 5.4024 -1.5155 22 1 12.9703 7.6221 -1.7291 23 1 10.6461 7.3567 -1.0896 24 6 7.8261 5.4645 -3.4611 25 6 4.0017 2.0466 -1.3025 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9291 0.5459 0.3218 32 1 4.3848 2.5317 1.6839 33 1 3.2303 3.5449 0.7135 34 1 5.9144 2.2934 -0.2157 35 1 5.5039 4.8903 -0.0518 36 1 4.3211 4.6525 -1.3604 37 1 5.3845 6.5287 -1.2918 38 1 5.5389 7.0921 -2.9745 39 1 6.6855 8.6774 -1.4998 40 1 7.6269 7.3582 -0.7623 41 1 7.7185 8.1646 -3.7050 42 1 8.9495 8.5730 -2.4862 43 1 13.0701 7.2452 -4.3977 44 1 7.4291 5.7538 -4.4342 45 1 8.2829 4.4774 -3.5317 46 1 3.2978 2.6807 -1.8414 47 1 4.4806 1.3053 -1.9422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397565520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:17 Heat of formation + Delta-G solvation = -100.549192 kcal Electronic energy + Delta-G solvation = -24199.194904 eV Core-core repulsion = 20767.055846 eV Total energy + Delta-G solvation = -3432.139058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33772 -40.19456 -38.45384 -37.29616 -35.27670 -33.56631 -32.42614 -31.98263 -30.59660 -27.10773 -26.62072 -26.23690 -24.02889 -23.49887 -23.18775 -21.35053 -20.45074 -19.90551 -18.93455 -17.95740 -17.85395 -16.75447 -16.61177 -16.49404 -16.44696 -15.97792 -15.42434 -15.17099 -14.88551 -14.62244 -14.36950 -14.17132 -13.89731 -13.76000 -13.58612 -13.32155 -13.19649 -13.03752 -12.95495 -12.89471 -12.54301 -12.19973 -12.15145 -11.91431 -11.85325 -11.74049 -11.59776 -11.48891 -11.38080 -11.22685 -11.06234 -10.70837 -10.57654 -10.32144 -9.49845 -8.32942 -6.35832 1.29789 1.32462 1.42156 1.73096 2.14487 2.30885 2.80009 3.03556 3.47124 3.65442 3.80904 3.88442 3.95462 4.05677 4.15990 4.18655 4.21998 4.27649 4.37435 4.40196 4.51226 4.52057 4.61995 4.68643 4.72976 4.78103 4.82843 4.87784 4.90539 4.92217 4.97215 5.02443 5.04277 5.11533 5.13423 5.25686 5.27356 5.30067 5.43729 5.48553 5.53037 5.69985 5.77920 6.26457 6.37196 6.60895 6.70525 7.27988 7.30462 8.83862 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.002884 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.575522 B = 9705.198801 C = 9894.969639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.062 3.938 5 C -0.116 4.116 6 C -0.096 4.096 7 C -0.116 4.116 8 C 0.500 3.500 9 O -0.595 6.595 10 N -0.614 5.614 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.006 3.994 15 H 0.024 0.976 16 C -0.515 4.515 17 H 0.034 0.966 18 C 0.013 3.987 19 N -0.947 5.947 20 Si 0.941 3.059 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.241 1.241 24 C 0.133 3.867 25 C -0.151 4.151 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.266 0.734 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.974 -6.892 15.000 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.004 3.996 5 C -0.153 4.153 6 C -0.115 4.115 7 C -0.156 4.156 8 C 0.290 3.710 9 O -0.476 6.476 10 N -0.346 5.346 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.148 4.148 14 C -0.014 4.014 15 H 0.042 0.958 16 C -0.554 4.554 17 H 0.053 0.947 18 C -0.184 4.184 19 N -0.586 5.586 20 Si 0.765 3.235 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.165 1.165 24 C 0.010 3.990 25 C -0.188 4.188 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.653 -7.221 14.800 28.821 hybrid contribution 1.521 -0.365 -0.298 1.592 sum -22.132 -7.586 14.502 27.526 Atomic orbital electron populations 1.21759 0.92875 1.03254 1.02738 1.22687 0.96416 0.83393 1.00463 1.87916 1.21061 1.27465 1.94676 1.23701 0.80669 0.98698 0.96534 1.23226 0.96772 0.97635 0.97682 1.22018 0.97436 0.94738 0.97292 1.21717 0.96868 0.99031 0.97935 1.21580 0.84816 0.82370 0.82196 1.90649 1.58700 1.33563 1.64728 1.48487 1.35509 1.08345 1.42228 1.22030 0.94942 0.82329 1.02270 1.21986 0.96624 1.00484 0.97888 1.21678 0.97424 0.97356 0.98364 1.19409 0.93269 0.93555 0.95141 0.95819 1.21185 0.92494 1.48448 0.93257 0.94749 1.25892 0.96596 0.94178 1.01743 1.70047 1.03132 1.50043 1.35424 0.85834 0.78287 0.78374 0.80989 1.20471 1.21032 1.16461 1.21426 0.87392 0.99514 0.90693 1.23547 0.97953 1.00050 0.97300 0.89467 0.91932 0.92469 0.93493 0.92462 0.89036 0.89603 0.87907 0.90102 0.86097 0.86299 0.86137 0.90152 0.87986 0.92505 0.92697 0.94060 0.92512 0.92744 0.93020 0.89360 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.68 6.50 71.98 0.47 1.15 16 3 O -0.39 -7.54 10.35 -148.98 -1.54 -9.08 16 4 C 0.06 1.11 4.31 31.12 0.13 1.25 16 5 C -0.12 -1.78 7.47 31.12 0.23 -1.55 16 6 C -0.10 -1.99 3.15 -10.27 -0.03 -2.02 16 7 C -0.12 -2.31 3.88 29.85 0.12 -2.20 16 8 C 0.50 16.08 7.70 87.66 0.67 16.76 16 9 O -0.60 -24.92 15.18 -3.06 -0.05 -24.96 16 10 N -0.61 -20.04 2.98 -818.89 -2.44 -22.48 16 11 C 0.11 2.39 6.34 86.36 0.55 2.94 16 12 C -0.13 -3.44 6.08 30.67 0.19 -3.26 16 13 C -0.11 -4.16 5.15 30.62 0.16 -4.00 16 14 C 0.01 0.27 1.93 -11.47 -0.02 0.25 16 15 H 0.02 1.14 5.25 -2.39 -0.01 1.12 16 16 C -0.52 -29.55 8.86 25.60 0.23 -29.32 16 17 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 18 C 0.01 0.78 5.47 84.66 0.46 1.24 16 19 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 20 Si 0.94 45.29 27.03 68.60 1.85 47.14 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.24 -10.56 6.77 99.48 0.67 -9.89 16 24 C 0.13 5.65 5.69 86.34 0.49 6.14 16 25 C -0.15 -3.24 7.46 31.12 0.23 -3.00 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.50 7.87 -2.38 -0.02 1.48 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.08 2.05 7.68 -2.38 -0.02 2.03 16 35 H 0.12 1.79 7.69 -2.38 -0.02 1.77 16 36 H 0.12 1.78 7.64 -2.39 -0.02 1.76 16 37 H 0.12 1.70 5.93 -2.39 -0.01 1.69 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.97 8.14 -2.38 -0.02 1.96 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.05 2.51 7.02 -2.39 -0.02 2.49 16 46 H 0.09 1.85 7.90 -2.39 -0.02 1.83 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -74.84 368.04 3.62 -71.21 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.89 Total: 14.18 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 4.62 Total: -16.59 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.14 Total: -81.90 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.59 Total: -34.04 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -74.84 3.62 -71.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.337 kcal (2) G-P(sol) polarization free energy of solvation -74.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds