Wall clock time and date at job start Tue Mar 31 2020 07:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.41858 * 2 1 4 4 O 1.44423 * 110.37153 * 122.31222 * 2 1 3 5 5 C 1.44424 * 105.27262 * 159.34330 * 4 2 1 6 6 H 1.09000 * 110.37216 * 78.42879 * 5 4 2 7 7 C 1.53000 * 110.37044 * 200.65597 * 5 4 2 8 8 C 1.54481 * 104.80519 * 319.48527 * 5 4 2 9 9 H 1.09003 * 110.50945 * 265.33665 * 8 5 4 10 10 C 1.52992 * 110.51432 * 142.62409 * 8 5 4 11 11 C 1.54482 * 110.37091 * 237.69190 * 2 1 3 12 12 H 1.09000 * 110.50966 * 98.40271 * 11 2 1 13 13 C 1.50706 * 110.50738 * 335.83304 * 11 2 1 14 14 O 1.21283 * 120.00051 * 275.11374 * 13 11 2 15 15 N 1.34782 * 119.99823 * 95.12083 * 13 11 2 16 16 C 1.46926 * 120.63176 * 354.75536 * 15 13 11 17 17 C 1.53190 * 108.76791 * 126.40465 * 16 15 13 18 18 C 1.53042 * 109.31181 * 54.65511 * 17 16 15 19 19 C 1.53040 * 109.52544 * 298.61517 * 18 17 16 20 20 H 1.08997 * 109.50314 * 301.42065 * 19 18 17 21 21 C 1.50704 * 109.49746 * 181.31901 * 19 18 17 22 22 H 1.07997 * 120.00278 * 240.00090 * 21 19 18 23 23 C 1.37881 * 119.99544 * 60.00558 * 21 19 18 24 24 N 1.31511 * 119.99926 * 359.97438 * 23 21 19 25 25 Si 1.86798 * 119.99772 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47103 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47411 * 119.99633 * 25 23 21 28 28 H 1.48499 * 109.46978 * 239.99729 * 25 23 21 29 29 C 1.46924 * 120.62919 * 174.77777 * 15 13 11 30 30 H 1.09001 * 109.47522 * 187.28499 * 1 2 3 31 31 H 1.09004 * 109.47132 * 307.28026 * 1 2 3 32 32 H 1.09003 * 109.47424 * 67.28332 * 1 2 3 33 33 H 1.08998 * 109.47712 * 58.54371 * 7 5 4 34 34 H 1.08996 * 109.47294 * 178.54845 * 7 5 4 35 35 H 1.08999 * 109.47048 * 298.54624 * 7 5 4 36 36 H 1.09005 * 109.46842 * 305.36292 * 10 8 5 37 37 H 1.09001 * 109.46732 * 65.35588 * 10 8 5 38 38 H 1.08996 * 109.47229 * 185.35874 * 10 8 5 39 39 H 1.08995 * 109.58555 * 246.20606 * 16 15 13 40 40 H 1.09006 * 109.58397 * 6.62571 * 16 15 13 41 41 H 1.09002 * 109.50978 * 294.70225 * 17 16 15 42 42 H 1.09000 * 109.48694 * 174.59979 * 17 16 15 43 43 H 1.08998 * 109.46301 * 178.60282 * 18 17 16 44 44 H 1.08997 * 109.45685 * 58.62446 * 18 17 16 45 45 H 0.97004 * 119.99810 * 180.02562 * 24 23 21 46 46 H 1.08993 * 109.58642 * 113.79847 * 29 15 13 47 47 H 1.08996 * 109.58764 * 353.37015 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 1.1443 5 6 3.3873 -1.0871 0.7994 6 1 4.0528 -0.2329 0.9239 7 6 3.8601 -2.2594 1.6615 8 6 3.3177 -1.5057 -0.6860 9 1 3.1955 -2.5853 -0.7732 10 6 4.5713 -1.0447 -1.4322 11 6 2.0678 -0.7740 -1.2240 12 1 2.3405 -0.0840 -2.0225 13 6 1.0442 -1.7666 -1.7124 14 8 0.9753 -2.8660 -1.2049 15 7 0.2056 -1.4325 -2.7132 16 6 0.1988 -0.0690 -3.2605 17 6 0.3860 -0.1466 -4.7790 18 6 -0.6814 -1.0678 -5.3741 19 6 -0.5223 -2.4757 -4.7956 20 1 0.4761 -2.8508 -5.0203 21 6 -1.5530 -3.3899 -5.4062 22 1 -2.2749 -3.8875 -4.7756 23 6 -1.5743 -3.5912 -6.7701 24 7 -0.6955 -2.9850 -7.5380 25 14 -2.8523 -4.7238 -7.5272 26 1 -3.7187 -5.2785 -6.4562 27 1 -3.6840 -3.9582 -8.4903 28 1 -2.1701 -5.8356 -8.2369 29 6 -0.7196 -2.4248 -3.2772 30 1 -0.3634 -1.0193 0.1303 31 1 -0.3633 0.6225 0.8177 32 1 -0.3634 0.3969 -0.9480 33 1 3.1938 -3.1096 1.5157 34 1 4.8732 -2.5380 1.3718 35 1 3.8501 -1.9658 2.7111 36 1 4.7024 0.0285 -1.2938 37 1 5.4416 -1.5707 -1.0397 38 1 4.4629 -1.2636 -2.4944 39 1 -0.7530 0.4111 -3.0335 40 1 1.0142 0.5053 -2.8207 41 1 1.3758 -0.5439 -5.0039 42 1 0.2871 0.8501 -5.2089 43 1 -0.5659 -1.1052 -6.4573 44 1 -1.6711 -0.6836 -5.1274 45 1 -0.7107 -3.1263 -8.4976 46 1 -1.7463 -2.1368 -3.0516 47 1 -0.5102 -3.4048 -2.8485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397845242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:50 Heat of formation + Delta-G solvation = -115.884846 kcal Electronic energy + Delta-G solvation = -25841.381698 eV Core-core repulsion = 22408.577636 eV Total energy + Delta-G solvation = -3432.804062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00664 -39.99648 -38.23098 -35.48715 -34.73630 -33.95909 -32.84911 -31.88232 -30.29265 -28.51706 -27.03907 -26.09813 -24.15053 -23.48790 -23.07468 -21.78305 -20.98551 -19.56403 -18.56991 -18.06924 -17.35846 -17.00491 -16.80022 -16.57005 -15.76091 -15.62006 -15.11850 -15.07526 -14.65635 -14.44662 -14.29928 -14.04357 -13.78855 -13.74064 -13.61519 -13.31105 -13.19856 -12.90889 -12.87639 -12.74658 -12.64635 -12.58613 -12.34727 -12.05515 -11.86567 -11.81679 -11.62642 -11.60608 -11.49694 -11.27694 -10.87232 -10.75419 -10.53003 -10.41273 -9.48392 -8.12489 -6.27436 1.38023 1.40555 1.51599 1.62201 2.08395 2.42401 2.82975 3.14058 3.34791 3.51825 3.73298 3.84206 3.94633 4.18301 4.22306 4.26678 4.30671 4.32137 4.38455 4.45533 4.48316 4.56993 4.57582 4.63595 4.67237 4.80018 4.85320 4.87221 4.95042 4.97841 5.00834 5.06656 5.11849 5.15500 5.19407 5.28757 5.31032 5.36474 5.48450 5.57022 5.60540 5.92359 5.95904 6.13271 6.33789 6.57466 6.81907 7.24371 7.40781 8.91196 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.003981 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.950856 B = 7031.532924 C = 7126.505464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 H 0.119 0.881 4 O -0.391 6.391 5 C 0.077 3.923 6 H 0.101 0.899 7 C -0.146 4.146 8 C -0.113 4.113 9 H 0.062 0.938 10 C -0.138 4.138 11 C -0.140 4.140 12 H 0.133 0.867 13 C 0.519 3.481 14 O -0.593 6.593 15 N -0.605 5.605 16 C 0.105 3.895 17 C -0.127 4.127 18 C -0.105 4.105 19 C 0.043 3.957 20 H -0.014 1.014 21 C -0.539 4.539 22 H 0.049 0.951 23 C 0.019 3.981 24 N -0.911 5.911 25 Si 0.953 3.047 26 H -0.271 1.271 27 H -0.274 1.274 28 H -0.282 1.282 29 C 0.132 3.868 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.262 0.738 46 H 0.058 0.942 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.437 12.924 12.826 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.137 0.863 4 O -0.311 6.311 5 C 0.020 3.980 6 H 0.119 0.881 7 C -0.203 4.203 8 C -0.132 4.132 9 H 0.080 0.920 10 C -0.195 4.195 11 C -0.161 4.161 12 H 0.150 0.850 13 C 0.309 3.691 14 O -0.474 6.474 15 N -0.336 5.336 16 C -0.016 4.016 17 C -0.165 4.165 18 C -0.144 4.144 19 C 0.024 3.976 20 H 0.004 0.996 21 C -0.577 4.577 22 H 0.067 0.933 23 C -0.180 4.180 24 N -0.550 5.550 25 Si 0.779 3.221 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.208 1.208 29 C 0.009 3.991 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.322 12.324 13.100 20.258 hybrid contribution -0.886 -1.427 -1.087 2.001 sum 8.436 10.897 12.013 18.282 Atomic orbital electron populations 1.22023 0.93647 1.01661 1.04133 1.23015 0.95180 0.95970 0.82417 0.86345 1.89150 1.28565 1.75014 1.38346 1.23225 0.84108 0.98244 0.92431 0.88119 1.21819 1.01650 0.96593 1.00240 1.22592 0.94259 1.00419 0.95937 0.91964 1.21815 0.95329 1.02827 0.99531 1.23042 0.94600 0.97454 1.01014 0.84960 1.20881 0.81600 0.88055 0.78591 1.90628 1.72557 1.25777 1.58470 1.48339 1.37677 1.12974 1.34603 1.22108 1.03987 0.81588 0.93943 1.21921 0.98912 1.00571 0.95115 1.21416 0.96515 0.94565 1.01865 1.18864 0.94632 0.94502 0.89625 0.99617 1.21464 1.15947 1.27601 0.92733 0.93273 1.25650 0.97614 0.97139 0.97597 1.70005 1.36502 1.43661 1.04881 0.85578 0.79276 0.78848 0.78385 1.19536 1.19981 1.20837 1.21503 0.91631 0.90972 0.94957 0.95196 0.89921 0.89397 0.94411 0.89171 0.91102 0.89690 0.90840 0.93007 0.89730 0.86778 0.93540 0.88958 0.91891 0.94436 0.92900 0.92370 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.52 71.98 0.61 -3.12 16 2 C 0.09 2.02 3.83 31.10 0.12 2.14 16 3 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 4 O -0.39 -10.51 11.04 -148.98 -1.64 -12.16 16 5 C 0.08 1.64 3.47 31.10 0.11 1.75 16 6 H 0.10 1.51 7.83 -2.39 -0.02 1.49 16 7 C -0.15 -3.01 9.52 71.98 0.69 -2.33 16 8 C -0.11 -2.72 2.77 -9.78 -0.03 -2.75 16 9 H 0.06 2.01 6.64 -2.39 -0.02 1.99 16 10 C -0.14 -2.33 8.97 71.98 0.65 -1.69 16 11 C -0.14 -3.50 2.28 -10.52 -0.02 -3.53 16 12 H 0.13 2.51 5.72 -2.39 -0.01 2.50 16 13 C 0.52 18.81 4.75 87.66 0.42 19.22 16 14 O -0.59 -27.34 15.19 -3.04 -0.05 -27.39 16 15 N -0.60 -21.75 2.79 -818.90 -2.29 -24.04 16 16 C 0.11 2.80 4.67 86.36 0.40 3.20 16 17 C -0.13 -4.09 6.08 30.67 0.19 -3.90 16 18 C -0.11 -4.66 4.96 30.62 0.15 -4.51 16 19 C 0.04 2.18 2.25 -11.46 -0.03 2.15 16 20 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 21 C -0.54 -30.20 8.56 25.60 0.22 -29.98 16 22 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 23 C 0.02 1.07 5.30 84.66 0.45 1.52 16 24 N -0.91 -51.97 11.31 21.45 0.24 -51.72 16 25 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 C 0.13 5.93 5.64 86.37 0.49 6.42 16 30 H 0.03 0.95 7.26 -2.39 -0.02 0.93 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.83 5.66 -2.39 -0.01 1.82 16 33 H 0.04 0.99 8.12 -2.39 -0.02 0.98 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.99 7.70 -2.39 -0.02 1.97 16 40 H 0.11 2.11 5.39 -2.38 -0.01 2.09 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 43 H 0.06 3.21 6.04 -2.39 -0.01 3.20 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.05 2.33 7.04 -2.39 -0.02 2.32 16 Total: -1.00 -72.12 353.87 3.63 -68.49 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.93 Total: 16.32 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 4.41 Total: -15.40 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -2.04 Total: -75.76 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.69 Total: -39.55 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.12 3.63 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397845242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.396 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds