Wall clock time and date at job start Tue Mar 31 2020 08:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00034 * 2 1 4 4 C 1.53000 * 112.85013 * 306.17329 * 3 2 1 5 5 C 1.50710 * 109.46701 * 291.34515 * 4 3 2 6 6 O 1.21276 * 120.00147 * 4.52559 * 5 4 3 7 7 N 1.34774 * 119.99536 * 184.53029 * 5 4 3 8 8 C 1.46931 * 120.63547 * 359.71697 * 7 5 4 9 9 C 1.52763 * 109.00788 * 233.58691 * 8 7 5 10 10 C 1.53037 * 109.38321 * 305.58558 * 9 8 7 11 11 C 1.52996 * 109.45844 * 181.26373 * 10 9 8 12 12 C 1.50697 * 109.47490 * 64.93260 * 11 10 9 13 13 H 1.07999 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00182 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00366 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47422 * 89.99839 * 16 14 12 18 18 H 1.48503 * 109.47126 * 209.99860 * 16 14 12 19 19 H 1.48505 * 109.47188 * 329.99758 * 16 14 12 20 20 C 1.53038 * 109.53990 * 61.24281 * 10 9 8 21 21 C 1.46931 * 120.62797 * 179.97438 * 7 5 4 22 22 C 1.53776 * 113.61442 * 174.97055 * 3 2 1 23 23 C 1.53778 * 87.08104 * 219.93663 * 22 3 2 24 24 C 1.53776 * 87.17405 * 25.39086 * 23 22 3 25 25 H 1.09002 * 109.47222 * 185.51280 * 1 2 3 26 26 H 1.09001 * 109.47066 * 305.50467 * 1 2 3 27 27 H 1.08993 * 109.47423 * 65.51097 * 1 2 3 28 28 H 1.09003 * 109.47565 * 51.34168 * 4 3 2 29 29 H 1.08992 * 109.47400 * 171.34687 * 4 3 2 30 30 H 1.08998 * 109.58022 * 353.41908 * 8 7 5 31 31 H 1.09002 * 109.58423 * 113.84428 * 8 7 5 32 32 H 1.09001 * 109.56056 * 185.55461 * 9 8 7 33 33 H 1.08992 * 109.36051 * 65.49758 * 9 8 7 34 34 H 1.08998 * 109.46242 * 301.21957 * 10 9 8 35 35 H 1.09005 * 109.47446 * 184.93100 * 11 10 9 36 36 H 1.09000 * 109.47325 * 304.92627 * 11 10 9 37 37 H 0.97002 * 119.99753 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.49852 * 178.68175 * 20 10 9 39 39 H 1.09000 * 109.52111 * 58.60056 * 20 10 9 40 40 H 1.08997 * 109.58492 * 246.15122 * 21 7 5 41 41 H 1.08993 * 109.58498 * 6.44083 * 21 7 5 42 42 H 1.09007 * 113.61121 * 105.38800 * 22 3 2 43 43 H 1.08991 * 113.69199 * 334.49974 * 22 3 2 44 44 H 1.08998 * 113.61739 * 139.98403 * 23 22 3 45 45 H 1.09002 * 113.61625 * 270.80176 * 23 22 3 46 46 H 1.09003 * 113.61558 * 89.15892 * 24 23 22 47 47 H 1.08994 * 113.61772 * 220.06199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4917 2.1867 -1.1381 5 6 1.9953 1.6543 -2.4550 6 8 2.6306 0.6218 -2.4886 7 7 1.7396 2.3257 -3.5954 8 6 0.9660 3.5746 -3.5715 9 6 -0.2001 3.4564 -4.5512 10 6 0.3344 3.0741 -5.9332 11 6 -0.8289 2.9860 -6.9231 12 6 -1.4459 4.3500 -7.0959 13 1 -1.0478 5.1953 -6.5542 14 6 -2.5185 4.5188 -7.9455 15 7 -3.0030 3.4897 -8.6056 16 14 -3.2829 6.2098 -8.1602 17 1 -2.6064 6.9209 -9.2745 18 1 -4.7278 6.0641 -8.4707 19 1 -3.1221 6.9885 -6.9060 20 6 1.0388 1.7179 -5.8524 21 6 2.2243 1.8195 -4.8868 22 6 3.5430 1.2973 0.1235 23 6 3.3956 2.5097 1.0580 24 6 1.9809 1.9970 1.3752 25 1 -0.3634 -1.0229 0.0987 26 1 -0.3633 0.5968 0.8366 27 1 -0.3634 0.4259 -0.9351 28 1 0.4017 2.1790 -1.1361 29 1 1.8480 3.2073 -0.9988 30 1 0.5811 3.7467 -2.5664 31 1 1.6056 4.4062 -3.8675 32 1 -0.7219 4.4113 -4.6143 33 1 -0.8889 2.6873 -4.2019 34 1 1.0419 3.8312 -6.2712 35 1 -0.4612 2.6292 -7.8852 36 1 -1.5792 2.2935 -6.5414 37 1 -3.7575 3.6086 -9.2036 38 1 1.3988 1.4354 -6.8417 39 1 0.3386 0.9647 -5.4912 40 1 2.9682 2.5054 -5.2920 41 1 2.6715 0.8352 -4.7488 42 1 4.0575 1.5255 -0.8100 43 1 3.9378 0.4101 0.6184 44 1 4.0706 2.4863 1.9135 45 1 3.4064 3.4668 0.5365 46 1 1.9465 1.3010 2.2133 47 1 1.2361 2.7892 1.4507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399357102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:02 Heat of formation + Delta-G solvation = -75.580524 kcal Electronic energy + Delta-G solvation = -24996.208166 eV Core-core repulsion = 21565.151831 eV Total energy + Delta-G solvation = -3431.056335 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76092 -39.19917 -37.13942 -35.95462 -34.00769 -32.26487 -31.18810 -29.70632 -27.91962 -27.17536 -25.78044 -24.70263 -23.50726 -22.80141 -21.77949 -20.05399 -19.07289 -18.40325 -17.22504 -16.94521 -16.30832 -15.85489 -15.43950 -15.10147 -15.00513 -14.62612 -14.52709 -13.76181 -13.72187 -13.37751 -13.18152 -13.07796 -12.76226 -12.49567 -12.27575 -12.13212 -12.09119 -11.78709 -11.54364 -11.21073 -11.09013 -11.01102 -10.90854 -10.81631 -10.71326 -10.48928 -10.39339 -10.14052 -9.79044 -9.61952 -9.41382 -9.27385 -8.99887 -8.38859 -8.32564 -6.02923 -4.05279 2.76878 3.11670 3.28208 3.35218 3.36746 3.72889 4.24909 4.34989 4.42026 4.43429 4.59494 4.78835 5.02155 5.13408 5.17537 5.22797 5.28401 5.31941 5.37538 5.40410 5.45885 5.48434 5.52818 5.58636 5.63279 5.67140 5.67829 5.75418 5.96039 5.97643 6.01474 6.07105 6.13160 6.35977 6.37014 6.50095 6.67781 6.93757 6.96239 7.07841 7.19946 7.59270 7.63858 7.78419 7.96687 8.34595 8.38759 9.01290 9.58684 11.08293 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.003275 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.901690 B = 8548.520741 C = 8778.706466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.108 3.892 4 C -0.152 4.152 5 C 0.514 3.486 6 O -0.531 6.531 7 N -0.608 5.608 8 C 0.103 3.897 9 C -0.120 4.120 10 C -0.080 4.080 11 C 0.027 3.973 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.129 4.129 21 C 0.113 3.887 22 C -0.111 4.111 23 C -0.144 4.144 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -1.234 18.494 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.276 6.276 3 C 0.068 3.932 4 C -0.192 4.192 5 C 0.302 3.698 6 O -0.408 6.408 7 N -0.342 5.342 8 C -0.019 4.019 9 C -0.158 4.158 10 C -0.099 4.099 11 C -0.010 4.010 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.167 4.167 21 C -0.009 4.009 22 C -0.148 4.148 23 C -0.181 4.181 24 C -0.198 4.198 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.161 -2.006 18.346 21.068 hybrid contribution -0.999 1.274 -0.366 1.660 sum 9.163 -0.732 17.980 20.194 Atomic orbital electron populations 1.22706 0.81949 1.02549 0.99779 1.88040 1.18909 1.26172 1.94470 1.22651 0.95004 0.83332 0.92200 1.22056 1.03147 1.01079 0.92960 1.20313 0.80222 0.84192 0.85081 1.90702 1.40213 1.23221 1.86635 1.48203 1.54242 1.25001 1.06793 1.21845 0.94025 0.85458 1.00604 1.21827 0.95895 1.03198 0.94851 1.21181 0.98805 0.94324 0.95573 1.19123 0.91627 0.97026 0.93176 1.21229 1.14464 0.94582 1.25242 0.92614 1.25027 0.97061 0.96506 0.95882 1.69966 1.25293 1.29772 1.28395 0.86645 0.78503 0.84688 0.78446 1.20726 1.21302 1.19912 1.22027 0.96745 0.99504 0.98448 1.21650 0.96640 1.00126 0.82515 1.22968 0.93447 0.98237 1.00184 1.22756 0.97045 0.98205 1.00138 1.23616 0.97815 1.00451 0.97868 0.89801 0.94193 0.94116 0.88239 0.87949 0.90739 0.91522 0.89658 0.92392 0.92349 0.96594 0.96662 0.93024 0.91175 0.92154 0.91965 0.89687 0.90417 0.89239 0.90778 0.90021 0.89124 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.31 101.05 1.04 1.33 16 2 O -0.36 -4.87 10.18 -44.15 -0.45 -5.32 16 3 C 0.11 1.23 0.53 -89.72 -0.05 1.18 16 4 C -0.15 -1.69 3.17 -27.88 -0.09 -1.78 16 5 C 0.51 7.54 7.19 -10.98 -0.08 7.46 16 6 O -0.53 -9.48 13.87 -3.36 -0.05 -9.53 16 7 N -0.61 -8.77 2.98 -172.99 -0.52 -9.29 16 8 C 0.10 1.35 6.28 -3.93 -0.02 1.33 16 9 C -0.12 -2.00 5.17 -26.83 -0.14 -2.14 16 10 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 11 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 12 C -0.52 -13.82 8.39 -34.44 -0.29 -14.11 16 13 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 C -0.13 -2.18 5.36 -26.59 -0.14 -2.32 16 21 C 0.11 1.70 6.44 -3.68 -0.02 1.68 16 22 C -0.11 -1.23 6.84 -25.92 -0.18 -1.41 16 23 C -0.14 -1.18 7.72 -25.92 -0.20 -1.38 16 24 C -0.16 -1.38 7.12 -25.83 -0.18 -1.56 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.35 7.84 -51.93 -0.41 -0.06 16 27 H 0.04 0.46 6.75 -51.93 -0.35 0.11 16 28 H 0.10 1.03 6.23 -51.93 -0.32 0.70 16 29 H 0.10 0.91 6.91 -51.93 -0.36 0.55 16 30 H 0.07 0.78 5.95 -51.93 -0.31 0.47 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.34 7.00 -51.93 -0.36 0.97 16 42 H 0.08 0.97 6.92 -51.93 -0.36 0.61 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.60 7.63 -51.93 -0.40 0.21 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -31.68 361.03 -8.85 -40.53 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.23 Total: -0.74 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.76 Total: -11.41 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.94 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.50 Total: -14.85 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.68 -8.85 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399357102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.054 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds