Wall clock time and date at job start Tue Mar 31 2020 08:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00034 * 2 1 4 4 C 1.53000 * 112.85013 * 306.17329 * 3 2 1 5 5 C 1.50710 * 109.46701 * 291.34515 * 4 3 2 6 6 O 1.21276 * 120.00147 * 4.52559 * 5 4 3 7 7 N 1.34774 * 119.99536 * 184.53029 * 5 4 3 8 8 C 1.46931 * 120.63547 * 359.71697 * 7 5 4 9 9 C 1.52763 * 109.00788 * 233.58691 * 8 7 5 10 10 C 1.53037 * 109.38321 * 305.58558 * 9 8 7 11 11 C 1.52996 * 109.45844 * 181.26373 * 10 9 8 12 12 C 1.50697 * 109.47490 * 64.93260 * 11 10 9 13 13 H 1.07999 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00182 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00366 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47422 * 89.99839 * 16 14 12 18 18 H 1.48503 * 109.47126 * 209.99860 * 16 14 12 19 19 H 1.48505 * 109.47188 * 329.99758 * 16 14 12 20 20 C 1.53038 * 109.53990 * 61.24281 * 10 9 8 21 21 C 1.46931 * 120.62797 * 179.97438 * 7 5 4 22 22 C 1.53776 * 113.61442 * 174.97055 * 3 2 1 23 23 C 1.53778 * 87.08104 * 219.93663 * 22 3 2 24 24 C 1.53776 * 87.17405 * 25.39086 * 23 22 3 25 25 H 1.09002 * 109.47222 * 185.51280 * 1 2 3 26 26 H 1.09001 * 109.47066 * 305.50467 * 1 2 3 27 27 H 1.08993 * 109.47423 * 65.51097 * 1 2 3 28 28 H 1.09003 * 109.47565 * 51.34168 * 4 3 2 29 29 H 1.08992 * 109.47400 * 171.34687 * 4 3 2 30 30 H 1.08998 * 109.58022 * 353.41908 * 8 7 5 31 31 H 1.09002 * 109.58423 * 113.84428 * 8 7 5 32 32 H 1.09001 * 109.56056 * 185.55461 * 9 8 7 33 33 H 1.08992 * 109.36051 * 65.49758 * 9 8 7 34 34 H 1.08998 * 109.46242 * 301.21957 * 10 9 8 35 35 H 1.09005 * 109.47446 * 184.93100 * 11 10 9 36 36 H 1.09000 * 109.47325 * 304.92627 * 11 10 9 37 37 H 0.97002 * 119.99753 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.49852 * 178.68175 * 20 10 9 39 39 H 1.09000 * 109.52111 * 58.60056 * 20 10 9 40 40 H 1.08997 * 109.58492 * 246.15122 * 21 7 5 41 41 H 1.08993 * 109.58498 * 6.44083 * 21 7 5 42 42 H 1.09007 * 113.61121 * 105.38800 * 22 3 2 43 43 H 1.08991 * 113.69199 * 334.49974 * 22 3 2 44 44 H 1.08998 * 113.61739 * 139.98403 * 23 22 3 45 45 H 1.09002 * 113.61625 * 270.80176 * 23 22 3 46 46 H 1.09003 * 113.61558 * 89.15892 * 24 23 22 47 47 H 1.08994 * 113.61772 * 220.06199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4917 2.1867 -1.1381 5 6 1.9953 1.6543 -2.4550 6 8 2.6306 0.6218 -2.4886 7 7 1.7396 2.3257 -3.5954 8 6 0.9660 3.5746 -3.5715 9 6 -0.2001 3.4564 -4.5512 10 6 0.3344 3.0741 -5.9332 11 6 -0.8289 2.9860 -6.9231 12 6 -1.4459 4.3500 -7.0959 13 1 -1.0478 5.1953 -6.5542 14 6 -2.5185 4.5188 -7.9455 15 7 -3.0030 3.4897 -8.6056 16 14 -3.2829 6.2098 -8.1602 17 1 -2.6064 6.9209 -9.2745 18 1 -4.7278 6.0641 -8.4707 19 1 -3.1221 6.9885 -6.9060 20 6 1.0388 1.7179 -5.8524 21 6 2.2243 1.8195 -4.8868 22 6 3.5430 1.2973 0.1235 23 6 3.3956 2.5097 1.0580 24 6 1.9809 1.9970 1.3752 25 1 -0.3634 -1.0229 0.0987 26 1 -0.3633 0.5968 0.8366 27 1 -0.3634 0.4259 -0.9351 28 1 0.4017 2.1790 -1.1361 29 1 1.8480 3.2073 -0.9988 30 1 0.5811 3.7467 -2.5664 31 1 1.6056 4.4062 -3.8675 32 1 -0.7219 4.4113 -4.6143 33 1 -0.8889 2.6873 -4.2019 34 1 1.0419 3.8312 -6.2712 35 1 -0.4612 2.6292 -7.8852 36 1 -1.5792 2.2935 -6.5414 37 1 -3.7575 3.6086 -9.2036 38 1 1.3988 1.4354 -6.8417 39 1 0.3386 0.9647 -5.4912 40 1 2.9682 2.5054 -5.2920 41 1 2.6715 0.8352 -4.7488 42 1 4.0575 1.5255 -0.8100 43 1 3.9378 0.4101 0.6184 44 1 4.0706 2.4863 1.9135 45 1 3.4064 3.4668 0.5365 46 1 1.9465 1.3010 2.2133 47 1 1.2361 2.7892 1.4507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399357102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:02 Heat of formation + Delta-G solvation = -93.808661 kcal Electronic energy + Delta-G solvation = -24996.998598 eV Core-core repulsion = 21565.151831 eV Total energy + Delta-G solvation = -3431.846766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.73435 -40.25072 -38.46586 -36.78687 -35.67226 -34.04091 -32.45188 -30.78400 -29.59383 -27.98859 -26.56403 -26.29175 -24.50015 -24.05168 -23.26415 -21.40660 -20.19692 -19.40883 -18.41667 -18.18130 -17.94906 -16.85748 -16.54169 -16.36023 -16.11321 -15.90856 -15.45566 -15.25187 -15.02460 -14.56444 -14.46308 -14.26579 -14.07067 -13.81612 -13.43137 -13.25295 -13.05103 -12.95504 -12.81288 -12.72665 -12.50397 -12.31377 -12.24941 -12.12066 -11.87127 -11.75479 -11.65117 -11.35407 -11.15381 -11.11294 -10.85178 -10.70938 -10.51426 -10.31856 -9.56841 -8.15734 -6.25704 1.42831 1.43438 1.54037 1.66290 2.03124 2.43537 2.92465 3.18169 3.39237 3.56686 3.66544 3.80057 3.91448 3.98575 4.05072 4.15904 4.22085 4.36605 4.39619 4.42534 4.45159 4.52501 4.54280 4.61106 4.68759 4.82002 4.84015 4.86082 4.87943 4.89046 4.96702 5.08239 5.10288 5.13310 5.27885 5.30841 5.32818 5.40412 5.44966 5.54939 5.61773 5.81859 5.89585 6.28829 6.38599 6.48420 6.91456 7.22719 7.43428 8.96360 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.003275 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.901690 B = 8548.520741 C = 8778.706466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.390 6.390 3 C 0.094 3.906 4 C -0.148 4.148 5 C 0.510 3.490 6 O -0.570 6.570 7 N -0.611 5.611 8 C 0.111 3.889 9 C -0.115 4.115 10 C -0.073 4.073 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.070 0.930 14 C -0.005 4.005 15 N -0.939 5.939 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.256 1.256 20 C -0.121 4.121 21 C 0.120 3.880 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.064 0.936 35 H -0.017 1.017 36 H -0.017 1.017 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 1.603 20.831 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.309 6.309 3 C 0.054 3.946 4 C -0.187 4.187 5 C 0.299 3.701 6 O -0.449 6.449 7 N -0.345 5.345 8 C -0.011 4.011 9 C -0.153 4.153 10 C -0.091 4.091 11 C -0.005 4.005 12 C -0.563 4.563 13 H 0.088 0.912 14 C -0.202 4.202 15 N -0.580 5.580 16 Si 0.786 3.214 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.180 1.180 20 C -0.160 4.160 21 C -0.003 4.003 22 C -0.160 4.160 23 C -0.167 4.167 24 C -0.185 4.185 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.130 0.870 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.002 0.998 36 H 0.001 0.999 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.548 0.852 20.702 23.250 hybrid contribution -1.109 0.289 -1.156 1.628 sum 9.439 1.141 19.547 21.737 Atomic orbital electron populations 1.22797 0.80938 1.03276 1.00180 1.88000 1.20235 1.27967 1.94727 1.22947 0.94806 0.82923 0.93952 1.22131 1.03733 1.02381 0.90467 1.20992 0.79393 0.83524 0.86152 1.90690 1.41978 1.24964 1.87251 1.48307 1.54206 1.25473 1.06468 1.21896 0.92620 0.85197 1.01370 1.21720 0.97212 1.02167 0.94187 1.21032 0.96772 0.95619 0.95713 1.19023 0.92842 0.95579 0.93054 1.21668 1.14300 0.95560 1.24790 0.91208 1.25996 0.97865 1.00644 0.95688 1.70124 1.26043 1.32380 1.29460 0.85498 0.77130 0.79668 0.79072 1.20186 1.21481 1.17977 1.21906 0.97113 0.97817 0.99128 1.21499 0.95745 1.00383 0.82667 1.23015 0.93505 0.99487 1.00010 1.22753 0.96939 0.97311 0.99716 1.23541 0.98575 1.00507 0.95845 0.89508 0.91870 0.95075 0.87045 0.84811 0.87233 0.89549 0.90287 0.93795 0.91761 0.99849 0.99869 0.93094 0.91353 0.93948 0.90151 0.90625 0.92448 0.90422 0.89503 0.88502 0.89134 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.31 113.37 1.17 1.67 16 2 O -0.39 -10.36 10.18 -140.45 -1.43 -11.79 16 3 C 0.09 1.94 0.53 -10.21 -0.01 1.94 16 4 C -0.15 -2.84 3.17 29.85 0.09 -2.75 16 5 C 0.51 14.20 7.19 87.66 0.63 14.83 16 6 O -0.57 -20.40 13.87 5.51 0.08 -20.33 16 7 N -0.61 -16.48 2.98 -819.62 -2.44 -18.92 16 8 C 0.11 2.53 6.28 86.22 0.54 3.07 16 9 C -0.11 -3.67 5.17 30.53 0.16 -3.51 16 10 C -0.07 -2.77 2.10 -10.77 -0.02 -2.79 16 11 C 0.03 1.64 4.45 29.85 0.13 1.77 16 12 C -0.53 -28.20 8.39 25.60 0.21 -27.99 16 13 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 14 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 15 N -0.94 -56.87 13.29 21.45 0.28 -56.58 16 16 Si 0.96 42.82 29.54 68.60 2.03 44.84 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 20 C -0.12 -4.17 5.36 30.69 0.16 -4.01 16 21 C 0.12 3.52 6.44 86.38 0.56 4.07 16 22 C -0.12 -2.58 6.84 31.12 0.21 -2.37 16 23 C -0.13 -1.70 7.72 31.12 0.24 -1.46 16 24 C -0.15 -2.03 7.12 31.18 0.22 -1.81 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 0.96 7.84 -2.39 -0.02 0.94 16 27 H 0.03 0.68 6.75 -2.39 -0.02 0.66 16 28 H 0.11 1.92 6.23 -2.39 -0.01 1.90 16 29 H 0.13 1.72 6.91 -2.39 -0.02 1.70 16 30 H 0.11 1.78 5.95 -2.39 -0.01 1.77 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.64 6.91 -2.39 -0.02 2.62 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 2.39 7.00 -2.39 -0.02 2.38 16 42 H 0.06 1.42 6.92 -2.38 -0.02 1.40 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 1.00 7.63 -2.39 -0.02 0.98 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 47 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -71.56 361.03 4.22 -67.34 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.93 Total: 14.60 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 4.77 Total: -19.16 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.16 Total: -75.50 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.35 Total: -32.12 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.56 4.22 -67.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399357102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.469 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds