Wall clock time and date at job start Tue Mar 31 2020 08:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42911 * 114.00043 * 2 1 4 4 C 1.52996 * 109.47070 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47531 * 64.99596 * 4 3 2 6 6 C 1.46498 * 119.99924 * 270.00000 * 5 4 3 7 7 C 1.50701 * 109.47272 * 269.99569 * 6 5 4 8 8 H 1.08001 * 119.99917 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99922 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00009 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00289 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47122 * 89.99609 * 11 9 7 13 13 H 1.48501 * 109.47339 * 209.99776 * 11 9 7 14 14 H 1.48506 * 109.46952 * 329.99794 * 11 9 7 15 15 C 1.34771 * 119.99694 * 89.99794 * 5 4 3 16 16 O 1.21280 * 120.00244 * 0.02562 * 15 5 4 17 17 C 1.50701 * 120.00118 * 180.02562 * 15 5 4 18 18 C 1.52997 * 109.47348 * 179.97438 * 17 15 5 19 19 C 1.53006 * 109.47127 * 184.99767 * 18 17 15 20 20 C 1.52998 * 117.49473 * 128.74735 * 19 18 17 21 21 C 1.52999 * 117.49564 * 60.08975 * 19 18 17 22 22 C 1.52999 * 109.46991 * 65.00452 * 18 17 15 23 23 C 1.53005 * 117.49421 * 248.74300 * 22 18 17 24 24 C 1.53005 * 117.50089 * 180.09060 * 22 18 17 25 25 H 1.09003 * 109.47020 * 300.00323 * 1 2 3 26 26 H 1.09001 * 109.46878 * 59.99888 * 1 2 3 27 27 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46810 * 59.99899 * 3 2 1 29 29 H 1.08999 * 109.46573 * 299.99575 * 3 2 1 30 30 H 1.09006 * 109.46773 * 304.99580 * 4 3 2 31 31 H 1.08994 * 109.47204 * 184.99861 * 4 3 2 32 32 H 1.09000 * 109.47108 * 30.00571 * 6 5 4 33 33 H 1.08999 * 109.46754 * 149.99897 * 6 5 4 34 34 H 0.96998 * 120.00169 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46894 * 59.99894 * 17 15 5 36 36 H 1.09001 * 109.46755 * 300.00519 * 17 15 5 37 37 H 1.08993 * 109.47194 * 304.99609 * 18 17 15 38 38 H 1.08996 * 115.55247 * 274.41876 * 19 18 17 39 39 H 1.08992 * 117.50074 * 0.02562 * 20 19 18 40 40 H 1.09001 * 117.49625 * 145.02619 * 20 19 18 41 41 H 1.09006 * 117.49693 * 214.97957 * 21 19 18 42 42 H 1.08998 * 117.50050 * 359.97172 * 21 19 18 43 43 H 1.08995 * 115.55503 * 34.40793 * 22 18 17 44 44 H 1.08999 * 117.50011 * 0.02562 * 23 22 18 45 45 H 1.09004 * 117.49761 * 145.01847 * 23 22 18 46 46 H 1.09000 * 117.50058 * 214.98050 * 24 22 18 47 47 H 1.08999 * 117.49282 * 359.96831 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.5011 -1.2978 -0.9448 8 1 6.2197 -0.5459 -0.6536 9 6 5.8607 -2.6288 -0.9525 10 7 7.0789 -2.9828 -0.6057 11 14 4.6180 -3.9292 -1.4567 12 1 4.7037 -4.1539 -2.9221 13 1 4.9121 -5.1980 -0.7433 14 1 3.2503 -3.4694 -1.1055 15 6 4.2616 1.3337 -2.3217 16 8 4.1547 2.5394 -2.2472 17 6 4.7139 0.6956 -3.6099 18 6 4.9696 1.7830 -4.6554 19 6 5.3080 1.1307 -5.9975 20 6 4.5214 1.5928 -7.2257 21 6 4.2557 0.2117 -6.6214 22 6 6.1405 2.6586 -4.2046 23 6 5.8294 4.1019 -3.8030 24 6 6.5532 3.8128 -5.1204 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9785 2.1765 0.0889 32 1 3.3852 -1.3629 -0.6733 33 1 3.9121 -1.2114 -2.3667 34 1 7.3320 -3.9192 -0.6115 35 1 3.9396 0.0191 -3.9717 36 1 5.6327 0.1359 -3.4350 37 1 4.0768 2.3984 -4.7654 38 1 6.3556 0.8664 -6.1409 39 1 3.7633 2.3618 -7.0777 40 1 5.0515 1.6321 -8.1773 41 1 4.6112 -0.6570 -7.1756 42 1 3.3227 0.0715 -6.0756 43 1 6.9298 2.1431 -3.6577 44 1 4.7907 4.4274 -3.8596 45 1 6.4145 4.5360 -2.9922 46 1 7.6141 4.0566 -5.1759 47 1 5.9908 3.9478 -6.0443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400981730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:25 Heat of formation + Delta-G solvation = -38.308026 kcal Electronic energy + Delta-G solvation = -25267.231333 eV Core-core repulsion = 21837.791254 eV Total energy + Delta-G solvation = -3429.440078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60611 -38.19310 -37.29802 -35.87077 -34.84498 -32.54077 -31.56036 -29.78842 -27.52609 -26.19846 -25.03300 -22.51551 -22.44148 -22.07761 -21.80975 -21.04223 -19.46926 -18.10544 -17.00329 -16.62402 -15.97684 -15.83492 -15.46722 -15.34923 -14.86467 -14.63612 -14.21186 -14.13580 -13.82267 -13.47106 -12.83133 -12.55863 -12.20371 -12.08185 -11.95593 -11.71308 -11.56843 -11.50455 -11.41507 -11.19112 -11.07245 -10.93050 -10.76360 -10.67789 -10.50374 -10.17409 -10.08810 -9.97116 -9.59967 -9.52543 -9.49554 -9.44246 -8.83955 -8.62666 -7.63845 -6.14304 -4.14519 3.23903 3.32433 3.36488 3.46136 3.82249 4.01994 4.10138 4.25414 4.34999 4.79171 5.00585 5.06480 5.17891 5.21111 5.31543 5.37796 5.39193 5.44584 5.49230 5.58720 5.63365 5.66227 5.67508 5.71397 5.74919 5.76493 5.96533 5.98037 6.01960 6.06029 6.18261 6.22518 6.26774 6.36119 6.37325 6.45678 6.50907 6.62319 6.64356 6.83191 6.92537 7.38081 7.45898 7.57126 8.24720 8.51299 8.90082 9.05512 9.46584 10.98495 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.006039 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.789526 B = 4635.151795 C = 5742.511158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.212 3.788 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.895 5.895 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.518 3.482 16 O -0.566 6.566 17 C -0.129 4.129 18 C -0.007 4.007 19 C -0.137 4.137 20 C -0.182 4.182 21 C -0.183 4.183 22 C -0.130 4.130 23 C -0.146 4.146 24 C -0.193 4.193 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 8.300 -7.044 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.316 5.316 6 C 0.090 3.910 7 C -0.576 4.576 8 H 0.094 0.906 9 C -0.127 4.127 10 N -0.533 5.533 11 Si 0.694 3.306 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.307 3.693 16 O -0.446 6.446 17 C -0.168 4.168 18 C -0.026 4.026 19 C -0.155 4.155 20 C -0.219 4.219 21 C -0.220 4.220 22 C -0.148 4.148 23 C -0.183 4.183 24 C -0.230 4.230 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.379 8.570 -6.962 13.861 hybrid contribution -0.689 -0.845 -0.129 1.098 sum -9.068 7.725 -7.091 13.863 Atomic orbital electron populations 1.22681 0.82183 1.02289 0.99308 1.88024 1.18674 1.27858 1.95242 1.23057 0.95465 0.84648 0.99775 1.21308 0.90716 0.99802 0.88297 1.47841 1.64451 1.08852 1.10441 1.19810 0.98012 0.75753 0.97408 1.21426 0.96084 0.93627 1.46420 0.90581 1.24849 0.95022 0.98294 0.94537 1.69899 1.18156 1.17387 1.47816 0.86959 0.82744 0.81688 0.79169 1.19966 1.21074 1.18471 1.20508 0.76515 0.86749 0.85575 1.90582 1.55058 1.14365 1.84641 1.21666 1.04179 0.98511 0.92479 1.20070 0.96925 0.94536 0.91069 1.22301 0.97319 1.02673 0.93196 1.22981 1.03587 0.98022 0.97318 1.22954 1.01055 0.93707 1.04251 1.22075 0.99676 0.90390 1.02629 1.22718 1.00743 0.98387 0.96442 1.22971 1.00193 1.04835 0.94993 0.94586 0.94621 0.90009 0.93204 0.93356 0.89562 0.89265 0.93747 0.95675 0.92523 0.89726 0.87550 0.90993 0.87673 0.89205 0.89273 0.88955 0.88884 0.88308 0.88938 0.89900 0.89754 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.47 9.53 -35.23 -0.34 -6.80 16 3 C 0.05 0.76 6.28 37.16 0.23 1.00 16 4 C 0.12 2.23 5.81 -4.04 -0.02 2.21 16 5 N -0.59 -12.04 2.42 -175.06 -0.42 -12.46 16 6 C 0.21 4.81 3.85 -5.19 -0.02 4.79 16 7 C -0.54 -14.33 9.84 -34.44 -0.34 -14.67 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 11 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 15 C 0.52 10.26 7.42 -10.99 -0.08 10.18 16 16 O -0.57 -11.53 13.05 5.56 0.07 -11.46 16 17 C -0.13 -2.29 3.62 -27.88 -0.10 -2.39 16 18 C -0.01 -0.11 1.82 -90.62 -0.16 -0.28 16 19 C -0.14 -1.83 4.81 -90.62 -0.44 -2.26 16 20 C -0.18 -2.09 10.18 -26.69 -0.27 -2.36 16 21 C -0.18 -2.26 9.68 -26.69 -0.26 -2.52 16 22 C -0.13 -2.03 4.27 -90.61 -0.39 -2.41 16 23 C -0.15 -2.21 8.57 -26.69 -0.23 -2.44 16 24 C -0.19 -2.56 9.88 -26.69 -0.26 -2.83 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 31 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 32 H 0.04 1.05 6.18 -51.93 -0.32 0.73 16 33 H 0.03 0.56 5.87 -51.93 -0.30 0.25 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 1.43 6.39 -51.93 -0.33 1.10 16 36 H 0.11 2.09 8.00 -51.93 -0.42 1.67 16 37 H 0.07 1.15 7.47 -51.93 -0.39 0.76 16 38 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 39 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.17 7.59 -51.93 -0.39 0.77 16 43 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 44 H 0.09 1.46 7.84 -51.93 -0.41 1.05 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -29.70 376.58 -8.68 -38.38 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.44 Total: 7.02 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.33 Total: -10.48 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.35 Total: -38.02 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.26 Total: -18.26 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.70 -8.68 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400981730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.071 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds