Wall clock time and date at job start Tue Mar 31 2020 08:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42911 * 114.00043 * 2 1 4 4 C 1.52996 * 109.47070 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47531 * 64.99596 * 4 3 2 6 6 C 1.46498 * 119.99924 * 270.00000 * 5 4 3 7 7 C 1.50701 * 109.47272 * 269.99569 * 6 5 4 8 8 H 1.08001 * 119.99917 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99922 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00009 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00289 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47122 * 89.99609 * 11 9 7 13 13 H 1.48501 * 109.47339 * 209.99776 * 11 9 7 14 14 H 1.48506 * 109.46952 * 329.99794 * 11 9 7 15 15 C 1.34771 * 119.99694 * 89.99794 * 5 4 3 16 16 O 1.21280 * 120.00244 * 0.02562 * 15 5 4 17 17 C 1.50701 * 120.00118 * 180.02562 * 15 5 4 18 18 C 1.52997 * 109.47348 * 179.97438 * 17 15 5 19 19 C 1.53006 * 109.47127 * 184.99767 * 18 17 15 20 20 C 1.52998 * 117.49473 * 128.74735 * 19 18 17 21 21 C 1.52999 * 117.49564 * 60.08975 * 19 18 17 22 22 C 1.52999 * 109.46991 * 65.00452 * 18 17 15 23 23 C 1.53005 * 117.49421 * 248.74300 * 22 18 17 24 24 C 1.53005 * 117.50089 * 180.09060 * 22 18 17 25 25 H 1.09003 * 109.47020 * 300.00323 * 1 2 3 26 26 H 1.09001 * 109.46878 * 59.99888 * 1 2 3 27 27 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46810 * 59.99899 * 3 2 1 29 29 H 1.08999 * 109.46573 * 299.99575 * 3 2 1 30 30 H 1.09006 * 109.46773 * 304.99580 * 4 3 2 31 31 H 1.08994 * 109.47204 * 184.99861 * 4 3 2 32 32 H 1.09000 * 109.47108 * 30.00571 * 6 5 4 33 33 H 1.08999 * 109.46754 * 149.99897 * 6 5 4 34 34 H 0.96998 * 120.00169 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46894 * 59.99894 * 17 15 5 36 36 H 1.09001 * 109.46755 * 300.00519 * 17 15 5 37 37 H 1.08993 * 109.47194 * 304.99609 * 18 17 15 38 38 H 1.08996 * 115.55247 * 274.41876 * 19 18 17 39 39 H 1.08992 * 117.50074 * 0.02562 * 20 19 18 40 40 H 1.09001 * 117.49625 * 145.02619 * 20 19 18 41 41 H 1.09006 * 117.49693 * 214.97957 * 21 19 18 42 42 H 1.08998 * 117.50050 * 359.97172 * 21 19 18 43 43 H 1.08995 * 115.55503 * 34.40793 * 22 18 17 44 44 H 1.08999 * 117.50011 * 0.02562 * 23 22 18 45 45 H 1.09004 * 117.49761 * 145.01847 * 23 22 18 46 46 H 1.09000 * 117.50058 * 214.98050 * 24 22 18 47 47 H 1.08999 * 117.49282 * 359.96831 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.5011 -1.2978 -0.9448 8 1 6.2197 -0.5459 -0.6536 9 6 5.8607 -2.6288 -0.9525 10 7 7.0789 -2.9828 -0.6057 11 14 4.6180 -3.9292 -1.4567 12 1 4.7037 -4.1539 -2.9221 13 1 4.9121 -5.1980 -0.7433 14 1 3.2503 -3.4694 -1.1055 15 6 4.2616 1.3337 -2.3217 16 8 4.1547 2.5394 -2.2472 17 6 4.7139 0.6956 -3.6099 18 6 4.9696 1.7830 -4.6554 19 6 5.3080 1.1307 -5.9975 20 6 4.5214 1.5928 -7.2257 21 6 4.2557 0.2117 -6.6214 22 6 6.1405 2.6586 -4.2046 23 6 5.8294 4.1019 -3.8030 24 6 6.5532 3.8128 -5.1204 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9785 2.1765 0.0889 32 1 3.3852 -1.3629 -0.6733 33 1 3.9121 -1.2114 -2.3667 34 1 7.3320 -3.9192 -0.6115 35 1 3.9396 0.0191 -3.9717 36 1 5.6327 0.1359 -3.4350 37 1 4.0768 2.3984 -4.7654 38 1 6.3556 0.8664 -6.1409 39 1 3.7633 2.3618 -7.0777 40 1 5.0515 1.6321 -8.1773 41 1 4.6112 -0.6570 -7.1756 42 1 3.3227 0.0715 -6.0756 43 1 6.9298 2.1431 -3.6577 44 1 4.7907 4.4274 -3.8596 45 1 6.4145 4.5360 -2.9922 46 1 7.6141 4.0566 -5.1759 47 1 5.9908 3.9478 -6.0443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400981730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:24 Heat of formation + Delta-G solvation = -54.009418 kcal Electronic energy + Delta-G solvation = -25267.912196 eV Core-core repulsion = 21837.791254 eV Total energy + Delta-G solvation = -3430.120942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08376 -39.42446 -38.55195 -36.98672 -36.50508 -34.55317 -32.95659 -31.26538 -29.32364 -27.32082 -26.32405 -24.35868 -23.74693 -23.10223 -23.01558 -22.21115 -20.67474 -19.68974 -19.06826 -18.05148 -17.44540 -17.06082 -16.80890 -16.64630 -16.18556 -15.97566 -15.84058 -15.40630 -15.07844 -14.81278 -14.53825 -14.07426 -13.80550 -13.57155 -13.38947 -13.12082 -12.92462 -12.76383 -12.64470 -12.46763 -12.35741 -12.30053 -12.23959 -12.02709 -11.94011 -11.92402 -11.66573 -11.23006 -11.07065 -10.83176 -10.73015 -10.66966 -10.59161 -10.29781 -9.33034 -8.28213 -6.33974 1.39248 1.41773 1.52917 1.86102 2.34398 2.36679 2.91692 2.97139 3.06767 3.07626 3.63313 3.78688 3.99550 4.08291 4.14158 4.17220 4.23015 4.29150 4.31527 4.38906 4.43298 4.52676 4.53321 4.55876 4.63048 4.68366 4.79750 4.83867 4.84076 4.87251 4.90614 4.92990 4.94753 5.07116 5.10932 5.17744 5.19373 5.33198 5.37899 5.39315 5.49782 5.56612 5.76999 6.21303 6.28496 6.67455 6.76155 7.29182 7.45406 8.88232 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.006039 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.789526 B = 4635.151795 C = 5742.511158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.060 3.940 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.228 3.772 7 C -0.536 4.536 8 H 0.029 0.971 9 C 0.020 3.980 10 N -0.944 5.944 11 Si 0.936 3.064 12 H -0.259 1.259 13 H -0.285 1.285 14 H -0.243 1.243 15 C 0.512 3.488 16 O -0.571 6.571 17 C -0.124 4.124 18 C 0.005 3.995 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.186 4.186 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.162 4.162 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.267 0.733 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 8.376 -8.835 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.018 4.018 4 C -0.007 4.007 5 N -0.325 5.325 6 C 0.105 3.895 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.179 4.179 10 N -0.584 5.584 11 Si 0.759 3.241 12 H -0.184 1.184 13 H -0.211 1.211 14 H -0.167 1.167 15 C 0.301 3.699 16 O -0.453 6.453 17 C -0.164 4.164 18 C -0.014 4.014 19 C -0.171 4.171 20 C -0.198 4.198 21 C -0.223 4.223 22 C -0.168 4.168 23 C -0.192 4.192 24 C -0.199 4.199 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.637 8.678 -8.752 16.281 hybrid contribution 0.067 -0.785 0.508 0.937 sum -10.570 7.894 -8.244 15.557 Atomic orbital electron populations 1.22891 0.79879 1.03480 1.00678 1.87959 1.21242 1.28332 1.95512 1.22890 0.93220 0.84709 1.00945 1.21438 0.93037 0.99257 0.86962 1.47901 1.64895 1.08125 1.11535 1.19493 0.95138 0.77169 0.97659 1.21560 0.97189 0.92823 1.45900 0.95302 1.25734 0.96952 1.00734 0.94434 1.70053 1.20588 1.18068 1.49648 0.85871 0.80557 0.78211 0.79455 1.18382 1.21053 1.16672 1.20891 0.76153 0.86773 0.86059 1.90567 1.55249 1.14561 1.84879 1.21655 1.03025 0.99300 0.92380 1.19933 0.96496 0.93578 0.91381 1.22196 0.97589 1.04356 0.93000 1.23052 1.02635 0.97308 0.96827 1.23032 1.00364 0.94646 1.04222 1.22034 0.99656 0.90828 1.04323 1.22676 1.00670 0.97992 0.97841 1.23014 1.00914 1.01449 0.94474 0.92623 0.93791 0.89000 0.90290 0.93716 0.90819 0.89227 0.93849 0.94432 0.92369 0.88708 0.90047 0.91286 0.88006 0.88675 0.87434 0.88056 0.89145 0.90774 0.89507 0.90538 0.88494 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.31 9.53 -148.98 -1.42 -14.73 16 3 C 0.06 1.81 6.28 71.98 0.45 2.26 16 4 C 0.12 4.27 5.81 86.38 0.50 4.77 16 5 N -0.59 -24.77 2.42 -826.17 -2.00 -26.76 16 6 C 0.23 10.38 3.85 85.63 0.33 10.71 16 7 C -0.54 -29.59 9.84 25.60 0.25 -29.33 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.02 1.12 5.47 84.65 0.46 1.58 16 10 N -0.94 -57.25 13.96 21.45 0.30 -56.96 16 11 Si 0.94 41.65 27.47 68.60 1.88 43.53 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 15 C 0.51 20.57 7.42 87.66 0.65 21.22 16 16 O -0.57 -23.51 13.05 -3.03 -0.04 -23.54 16 17 C -0.12 -4.45 3.62 29.85 0.11 -4.34 16 18 C 0.00 0.15 1.82 -10.79 -0.02 0.13 16 19 C -0.15 -3.87 4.81 -10.79 -0.05 -3.93 16 20 C -0.16 -3.22 10.18 30.62 0.31 -2.91 16 21 C -0.19 -4.19 9.68 30.62 0.30 -3.89 16 22 C -0.15 -4.73 4.27 -10.79 -0.05 -4.78 16 23 C -0.15 -4.66 8.57 30.62 0.26 -4.40 16 24 C -0.16 -4.05 9.88 30.62 0.30 -3.75 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 2.84 8.07 -2.38 -0.02 2.82 16 31 H 0.09 3.22 7.42 -2.39 -0.02 3.20 16 32 H 0.04 2.01 6.18 -2.39 -0.01 2.00 16 33 H 0.04 1.63 5.87 -2.39 -0.01 1.62 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.09 3.15 6.39 -2.39 -0.02 3.14 16 36 H 0.08 3.34 8.00 -2.39 -0.02 3.32 16 37 H 0.07 2.13 7.47 -2.39 -0.02 2.12 16 38 H 0.10 2.64 8.11 -2.39 -0.02 2.62 16 39 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 40 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.09 2.08 7.59 -2.39 -0.02 2.07 16 43 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 44 H 0.09 2.71 7.84 -2.39 -0.02 2.69 16 45 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -65.55 376.58 4.65 -60.90 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.86 Total: 32.37 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 5.06 Total: -14.81 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.70 Total: -83.72 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.46 Total: -38.27 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Total: -65.55 4.65 -60.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400981730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.891 kcal (2) G-P(sol) polarization free energy of solvation -65.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds